Entity Search List
Search Entities
GET /api/v1/entities/?format=api&page=326
https://panelapp.genomicsengland.co.uk/api/v1/entities/?format=api&page=327", "previous": "https://panelapp.genomicsengland.co.uk/api/v1/entities/?format=api&page=325", "results": [ { "gene_data": { "alias": [ "FLJ23119", "KIAA1790", "Roco1", "RIPK6" ], "biotype": "protein_coding", "hgnc_id": "HGNC:18608", "gene_name": "leucine rich repeat kinase 1", "omim_gene": [ "610986" ], "alias_name": null, "gene_symbol": "LRRK1", "hgnc_symbol": "LRRK1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "15:101459420-101610317", "ensembl_id": "ENSG00000154237" } }, "GRch38": { "90": { "location": "15:100919215-101078254", "ensembl_id": "ENSG00000154237" } } }, "hgnc_date_symbol_changed": "2004-01-22" }, "entity_type": "gene", "entity_name": "LRRK1", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30794780", "26769960" ], "evidence": [ "Literature" ], "phenotypes": [], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 227, "hash_id": "590b12638f6203169828a560", "name": "Genomic imprinting", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "0.149", "version_created": "2023-03-01T09:20:41.727370Z", "relevant_disorders": [], "stats": { "number_of_genes": 230, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ22728", "SDR10E1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:26222", "gene_name": "fatty acyl-CoA reductase 1", "omim_gene": [ "616107" ], "alias_name": [ "short chain dehydrogenase/reductase family 10E, member 1" ], "gene_symbol": "FAR1", "hgnc_symbol": "FAR1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:13690217-13753893", "ensembl_id": "ENSG00000197601" } }, "GRch38": { "90": { "location": "11:13668670-13732346", "ensembl_id": "ENSG00000197601" } } }, "hgnc_date_symbol_changed": "2008-06-06" }, "entity_type": "gene", "entity_name": "FAR1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "25439727", "model of function postulated by Honsho et al. (J. Biol. Chem. 285: 8537-8542, 2010) for the protein" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "Peroxisomal fatty acyl-CoA reductase 1 disorder, OMIM:616154" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 114, "hash_id": "57b6f5058f6203767a308772", "name": "Peroxisomal disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Peroxisomal disorders", "status": "public", "version": "1.19", "version_created": "2022-04-01T16:23:23.030983Z", "relevant_disorders": [ "Other peroxisomal disorders", "Peroxisomal biogenesis disorders" ], "stats": { "number_of_genes": 38, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "CTLN1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:758", "gene_name": "argininosuccinate synthase 1", "omim_gene": [ "603470" ], "alias_name": null, "gene_symbol": "ASS1", "hgnc_symbol": "ASS1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "9:133320316-133376661", "ensembl_id": "ENSG00000130707" } }, "GRch38": { "90": { "location": "9:130444929-130501274", "ensembl_id": "ENSG00000130707" } } }, "hgnc_date_symbol_changed": "2006-08-24" }, "entity_type": "gene", "entity_name": "ASS1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "2358466" ], "evidence": [ "Expert Review Green", "Emory Genetics Laboratory", "UKGTN" ], "phenotypes": [ "Citrullinemia\t215700" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 267, "hash_id": "5548cc07bb5a16250cc22015", "name": "Hyperammonaemia", "disease_group": "Metabolic disorders", "disease_sub_group": "Urea Cycle disorders", "status": "public", "version": "1.21", "version_created": "2023-08-08T09:43:56.242433Z", "relevant_disorders": [], "stats": { "number_of_genes": 106, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "MCD", "hMCD" ], "biotype": "protein_coding", "hgnc_id": "HGNC:7150", "gene_name": "malonyl-CoA decarboxylase", "omim_gene": [ "606761" ], "alias_name": null, "gene_symbol": "MLYCD", "hgnc_symbol": "MLYCD", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "16:83932731-83949787", "ensembl_id": "ENSG00000103150" } }, "GRch38": { "90": { "location": "16:83899126-83927026", "ensembl_id": "ENSG00000103150" } } }, "hgnc_date_symbol_changed": "2000-02-11" }, "entity_type": "gene", "entity_name": "MLYCD", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "12955715", "10417274", "10455107" ], "evidence": [ "Expert Review Green", "Illumina TruGenome Clinical Sequencing Services", "Radboud University Medical Center, Nijmegen", "UKGTN", "Emory Genetics Laboratory" ], "phenotypes": [ "malonic aciduria", "Malonyl-CoA decarboxylase deficiency\t248360" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 267, "hash_id": "5548cc07bb5a16250cc22015", "name": "Hyperammonaemia", "disease_group": "Metabolic disorders", "disease_sub_group": "Urea Cycle disorders", "status": "public", "version": "1.21", "version_created": "2023-08-08T09:43:56.242433Z", "relevant_disorders": [], "stats": { "number_of_genes": 106, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:2073", "gene_name": "tripeptidyl peptidase 1", "omim_gene": [ "607998" ], "alias_name": [ "TPP I" ], "gene_symbol": "TPP1", "hgnc_symbol": "TPP1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:6634000-6640692", "ensembl_id": "ENSG00000166340" } }, "GRch38": { "90": { "location": "11:6612763-6619461", "ensembl_id": "ENSG00000166340" } } }, "hgnc_date_symbol_changed": "2004-12-10" }, "entity_type": "gene", "entity_name": "TPP1", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Emory Genetics Laboratory" ], "phenotypes": [], "mode_of_inheritance": "", "tags": [], "panel": { "id": 267, "hash_id": "5548cc07bb5a16250cc22015", "name": "Hyperammonaemia", "disease_group": "Metabolic disorders", "disease_sub_group": "Urea Cycle disorders", "status": "public", "version": "1.21", "version_created": "2023-08-08T09:43:56.242433Z", "relevant_disorders": [], "stats": { "number_of_genes": 106, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "BAF57" ], "biotype": "protein_coding", "hgnc_id": "HGNC:11109", "gene_name": "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1", "omim_gene": [ "603111" ], "alias_name": null, "gene_symbol": "SMARCE1", "hgnc_symbol": "SMARCE1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "17:38781214-38804760", "ensembl_id": "ENSG00000073584" } }, "GRch38": { "90": { "location": "17:40624962-40648508", "ensembl_id": "ENSG00000073584" } } }, "hgnc_date_symbol_changed": "1998-05-15" }, "entity_type": "gene", "entity_name": "SMARCE1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "PMID: 23377182" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "{Meningioma, familial, susceptibility to}, OMIM:607174" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 167, "hash_id": "55af764522c1fc78a829f89a", "name": "Familial Tumours Syndromes of the central & peripheral Nervous system", "disease_group": "Tumour syndromes", "disease_sub_group": "Muscle and nerve", "status": "public", "version": "1.14", "version_created": "2022-11-08T15:10:15.808800Z", "relevant_disorders": [ "Familial tumour syndromes of the central & peripheral nervous system", "Familial tumour syndromes of the central and peripheral nervous system" ], "stats": { "number_of_genes": 21, "number_of_strs": 0, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:8856", "gene_name": "peroxisomal biogenesis factor 14", "omim_gene": [ "601791" ], "alias_name": null, "gene_symbol": "PEX14", "hgnc_symbol": "PEX14", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:10532345-10690815", "ensembl_id": "ENSG00000142655" } }, "GRch38": { "90": { "location": "1:10472288-10630758", "ensembl_id": "ENSG00000142655" } } }, "hgnc_date_symbol_changed": "1998-08-21" }, "entity_type": "gene", "entity_name": "PEX14", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "15146459", "18285423", "26627464" ], "evidence": [ "Expert Review Green", "Victorian Clinical Genetics Services", "Emory Genetics Laboratory" ], "phenotypes": [ "Peroxisome biogenesis disorder 13A (Zellweger) 614887" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "cnv" ], "panel": { "id": 385, "hash_id": null, "name": "Neonatal cholestasis", "disease_group": "Gastroenterological disorders", "disease_sub_group": "Liver disease", "status": "public", "version": "1.26", "version_created": "2022-10-13T17:48:00.571148Z", "relevant_disorders": [], "stats": { "number_of_genes": 94, "number_of_strs": 0, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA0233" ], "biotype": "protein_coding", "hgnc_id": "HGNC:28993", "gene_name": "piezo type mechanosensitive ion channel component 1", "omim_gene": [ "611184" ], "alias_name": null, "gene_symbol": "PIEZO1", "hgnc_symbol": "PIEZO1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "16:88781751-88851619", "ensembl_id": "ENSG00000103335" } }, "GRch38": { "90": { "location": "16:88715343-88785211", "ensembl_id": "ENSG00000103335" } } }, "hgnc_date_symbol_changed": "2011-08-31" }, "entity_type": "gene", "entity_name": "PIEZO1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "26333996", "26387913" ], "evidence": [ "Expert Review Green", "Other" ], "phenotypes": [ "Dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema, OMIM:194380", "Lymphatic malformation 6, OMIM:616843", "Congenital lymphatic dysplasia with hydrops and/or lymphoedema" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 144, "hash_id": "5763f4868f620350a199604f", "name": "Fetal hydrops", "disease_group": "Dysmorphic and congenital abnormality syndromes", "disease_sub_group": "Fetal disorders", "status": "public", "version": "1.64", "version_created": "2024-03-11T16:21:50.989347Z", "relevant_disorders": [], "stats": { "number_of_genes": 111, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "ALR", "MLL4", "CAGL114" ], "biotype": "protein_coding", "hgnc_id": "HGNC:7133", "gene_name": "lysine methyltransferase 2D", "omim_gene": [ "602113" ], "alias_name": null, "gene_symbol": "KMT2D", "hgnc_symbol": "KMT2D", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "12:49412758-49453557", "ensembl_id": "ENSG00000167548" } }, "GRch38": { "90": { "location": "12:49018975-49059774", "ensembl_id": "ENSG00000167548" } } }, "hgnc_date_symbol_changed": "2013-05-09" }, "entity_type": "gene", "entity_name": "KMT2D", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30293990", "27568880", "15690368" ], "evidence": [ "Expert Review Green", "Expert list" ], "phenotypes": [ "Kabuki syndrome" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 144, "hash_id": "5763f4868f620350a199604f", "name": "Fetal hydrops", "disease_group": "Dysmorphic and congenital abnormality syndromes", "disease_sub_group": "Fetal disorders", "status": "public", "version": "1.64", "version_created": "2024-03-11T16:21:50.989347Z", "relevant_disorders": [], "stats": { "number_of_genes": 111, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:14974", "gene_name": "sorting nexin 10", "omim_gene": [ "614780" ], "alias_name": null, "gene_symbol": "SNX10", "hgnc_symbol": "SNX10", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "7:26331541-26413949", "ensembl_id": "ENSG00000086300" } }, "GRch38": { "90": { "location": "7:26291895-26374329", "ensembl_id": "ENSG00000086300" } } }, "hgnc_date_symbol_changed": "2001-04-10" }, "entity_type": "gene", "entity_name": "SNX10", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "32086639", "32048120" ], "evidence": [ "Expert Review Green", "IUIS Classification December 2019", "IUIS Classification February 2018", "IUIS Classification December 2019", "IUIS Classification February 2018" ], "phenotypes": [ "Osteopetrosis with visual impairment", "Defects in intrinsic and innate immunity", "Defects in Intrinsic and Innate Immunity" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 111, "hash_id": "58c7fd7f8f6203413360f1b6", "name": "COVID-19 research", "disease_group": "Viral research", "disease_sub_group": "", "status": "public", "version": "1.142", "version_created": "2024-04-24T16:30:10.989811Z", "relevant_disorders": [ "Viral susceptibility" ], "stats": { "number_of_genes": 695, "number_of_strs": 0, "number_of_regions": 2 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA1837", "AAVR" ], "biotype": "protein_coding", "hgnc_id": "HGNC:30071", "gene_name": "KIAA0319 like", "omim_gene": [ "613535" ], "alias_name": [ "AAV receptor" ], "gene_symbol": "KIAA0319L", "hgnc_symbol": "KIAA0319L", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:35899091-36023551", "ensembl_id": "ENSG00000142687" } }, "GRch38": { "90": { "location": "1:35433490-35557950", "ensembl_id": "ENSG00000142687" } } }, "hgnc_date_symbol_changed": "2005-04-01" }, "entity_type": "gene", "entity_name": "KIAA0319L", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "OMIM", "Expert list" ], "phenotypes": [], "mode_of_inheritance": "Unknown", "tags": [], "panel": { "id": 111, "hash_id": "58c7fd7f8f6203413360f1b6", "name": "COVID-19 research", "disease_group": "Viral research", "disease_sub_group": "", "status": "public", "version": "1.142", "version_created": "2024-04-24T16:30:10.989811Z", "relevant_disorders": [ "Viral susceptibility" ], "stats": { "number_of_genes": 695, "number_of_strs": 0, "number_of_regions": 2 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:6996", "gene_name": "myocyte enhancer factor 2C", "omim_gene": [ "600662" ], "alias_name": null, "gene_symbol": "MEF2C", "hgnc_symbol": "MEF2C", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "5:88013975-88199922", "ensembl_id": "ENSG00000081189" } }, "GRch38": { "90": { "location": "5:88717117-88904257", "ensembl_id": "ENSG00000081189" } } }, "hgnc_date_symbol_changed": "1995-02-08" }, "entity_type": "gene", "entity_name": "MEF2C", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Yorkshire and North East GLH", "NHS GMS", "Expert Review Red", "Illumina TruGenome Clinical Sequencing Services", "Emory Genetics Laboratory", "Radboud University Medical Center, Nijmegen" ], "phenotypes": [ "Mental retardation, stereotypic movements, epilepsy, and/or cerebral malformations, 613443", "Mental retardation, stereotypic movements, epilepsy, and/or cerebral malformations", "Intellectual Disability, Stereotypic Movements, Epilepsy, and/or Cerebral Malformations" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 147, "hash_id": "5819a24f8f6203341de99c89", "name": "Cerebral vascular malformations", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Cerebrovascular disorders", "status": "public", "version": "3.16", "version_created": "2024-04-24T16:23:20.959409Z", "relevant_disorders": [ "Cerebrovascular disorders", "Vein of Galen malformation", "Cerebral arteriovenous malformations", "Moyamoya disease", "R336" ], "stats": { "number_of_genes": 105, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "EAP1", "KIAA1865" ], "biotype": "protein_coding", "hgnc_id": "HGNC:14282", "gene_name": "interferon regulatory factor 2 binding protein like", "omim_gene": [ "611720" ], "alias_name": [ "enhanced at puberty 1" ], "gene_symbol": "IRF2BPL", "hgnc_symbol": "IRF2BPL", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "14:77490888-77495034", "ensembl_id": "ENSG00000119669" } }, "GRch38": { "90": { "location": "14:77024543-77028699", "ensembl_id": "ENSG00000119669" } } }, "hgnc_date_symbol_changed": "2011-02-23" }, "entity_type": "gene", "entity_name": "IRF2BPL", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30057031", "28135719", "25363768", "30166628" ], "evidence": [ "NHS GMS", "Expert Review Green", "Expert list" ], "phenotypes": [ "Neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures OMIM:618088", "neurodevelopmental disorder with regression, abnormal movements, loss of speech, and seizures MONDO:0060759" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 477, "hash_id": null, "name": "Ataxia and cerebellar anomalies - narrow panel", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.64", "version_created": "2024-04-23T13:36:12.679484Z", "relevant_disorders": [], "stats": { "number_of_genes": 295, "number_of_strs": 14, "number_of_regions": 4 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "DKFZp762I194" ], "biotype": "protein_coding", "hgnc_id": "HGNC:970", "gene_name": "Bardet-Biedl syndrome 5", "omim_gene": [ "603650" ], "alias_name": null, "gene_symbol": "BBS5", "hgnc_symbol": "BBS5", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "2:170335688-170382432", "ensembl_id": "ENSG00000163093" } }, "GRch38": { "90": { "location": "2:169479178-169506655", "ensembl_id": "ENSG00000163093" } } }, "hgnc_date_symbol_changed": "1998-03-25" }, "entity_type": "gene", "entity_name": "BBS5", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Emory Genetics Laboratory" ], "phenotypes": [], "mode_of_inheritance": "", "tags": [], "panel": { "id": 122, "hash_id": "554a0ac9bb5a167e4ccd1ec2", "name": "Thoracic dystrophies", "disease_group": "Skeletal disorders", "disease_sub_group": "Skeletal dysplasias", "status": "public", "version": "1.20", "version_created": "2024-04-09T15:06:28.929893Z", "relevant_disorders": [], "stats": { "number_of_genes": 133, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ21816", "FANCN" ], "biotype": "protein_coding", "hgnc_id": "HGNC:26144", "gene_name": "partner and localizer of BRCA2", "omim_gene": [ "610355" ], "alias_name": [ "Fanconi anemia, complementation group N" ], "gene_symbol": "PALB2", "hgnc_symbol": "PALB2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "16:23614488-23652631", "ensembl_id": "ENSG00000083093" } }, "GRch38": { "90": { "location": "16:23603160-23641310", "ensembl_id": "ENSG00000083093" } } }, "hgnc_date_symbol_changed": "2007-01-15" }, "entity_type": "gene", "entity_name": "PALB2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "17200671" ], "evidence": [ "NHS GMS", "Expert List", "Expert Review Green", "UKGTN", "Illumina TruGenome Clinical Sequencing Services", "Radboud University Medical Center, Nijmegen" ], "phenotypes": [ "Fanconi Anaemia", "Fanconi anemia, complementation group N, 610832", "{Pancreatic cancer, susceptibility to, 3}, 613348", "Fanconi Anemia", "{Breast cancer, susceptibility to}, 114480" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 243, "hash_id": "55af539322c1fc78a9ef5052", "name": "Childhood solid tumours", "disease_group": "Tumour syndromes", "disease_sub_group": "Childhood Tumours", "status": "public", "version": "4.18", "version_created": "2024-04-11T12:52:20.613240Z", "relevant_disorders": [ "Paediatric congenital malformation-dysmorphism-tumour syndrome", "Paediatric congenital malformation-dysmorphism-tumour syndromes", "Paediatric congenital malformation-dysmorphism-tumour sydromes", "Paediatric congenital malformation-dysmorphism-tumour syndrome", "Tumour predisposition - childhood onset", "R359" ], "stats": { "number_of_genes": 121, "number_of_strs": 0, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Cancer Germline Virtual", "slug": "gms-cancer-germline-virtual", "description": "This is a panel used for WGS germline analysis for the GMS." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "RX" ], "biotype": "protein_coding", "hgnc_id": "HGNC:18662", "gene_name": "retina and anterior neural fold homeobox", "omim_gene": [ "601881" ], "alias_name": null, "gene_symbol": "RAX", "hgnc_symbol": "RAX", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "18:56934267-56941318", "ensembl_id": "ENSG00000134438" } }, "GRch38": { "90": { "location": "18:59267035-59274086", "ensembl_id": "ENSG00000134438" } } }, "hgnc_date_symbol_changed": "2002-05-22" }, "entity_type": "gene", "entity_name": "RAX", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30811539", "18783408", "14662654" ], "evidence": [ "Expert Review Amber", "Expert review" ], "phenotypes": [ "Microphthalmia, isolated 3, OMIM:611038", "isolated microphthalmia 3, MONDO:0012604" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "watchlist" ], "panel": { "id": 483, "hash_id": null, "name": "Pituitary hormone deficiency", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.12", "version_created": "2024-04-23T11:36:37.190290Z", "relevant_disorders": [ "R159" ], "stats": { "number_of_genes": 64, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:1069", "gene_name": "bone morphogenetic protein 2", "omim_gene": [ "112261" ], "alias_name": null, "gene_symbol": "BMP2", "hgnc_symbol": "BMP2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "20:6748311-6760927", "ensembl_id": "ENSG00000125845" } }, "GRch38": { "90": { "location": "20:6767664-6780280", "ensembl_id": "ENSG00000125845" } } }, "hgnc_date_symbol_changed": "1990-06-11" }, "entity_type": "gene", "entity_name": "BMP2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "19327734", "21357617", "29198724", "29129813" ], "evidence": [ "Expert Review Green", "London South East RGC GSTT", "Viapath" ], "phenotypes": [ "Brachydactyly, type A2 112600", "Short stature, facial dysmorphism, and skeletal anomalies with or without cardiac anomalies 617877" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [ "cnv" ], "panel": { "id": 384, "hash_id": null, "name": "Limb disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.21", "version_created": "2024-04-24T16:40:31.599599Z", "relevant_disorders": [], "stats": { "number_of_genes": 260, "number_of_strs": 0, "number_of_regions": 2 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "KPPS2", "PPKS2", "DPI", "DPII" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3052", "gene_name": "desmoplakin", "omim_gene": [ "125647" ], "alias_name": null, "gene_symbol": "DSP", "hgnc_symbol": "DSP", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "6:7541808-7586950", "ensembl_id": "ENSG00000096696" } }, "GRch38": { "90": { "location": "6:7541575-7586717", "ensembl_id": "ENSG00000096696" } } }, "hgnc_date_symbol_changed": "1991-03-04" }, "entity_type": "gene", "entity_name": "DSP", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "Illumina TruGenome Clinical Sequencing Services" ], "phenotypes": [ "Ectodermal Dysplasia/Skin Fragility Syndrome" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 136, "hash_id": "561677af22c1fc212a6db65d", "name": "Ectodermal dysplasia without a known gene mutation", "disease_group": "Dermatological disorders", "disease_sub_group": "Ectodermal dysplasias", "status": "public", "version": "1.28", "version_created": "2024-04-02T14:18:50.852096Z", "relevant_disorders": [], "stats": { "number_of_genes": 30, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:14584", "gene_name": "VPS16, CORVET/HOPS core subunit", "omim_gene": [ "608550" ], "alias_name": null, "gene_symbol": "VPS16", "hgnc_symbol": "VPS16", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "20:2821349-2847378", "ensembl_id": "ENSG00000215305" } }, "GRch38": { "90": { "location": "20:2840703-2866732", "ensembl_id": "ENSG00000215305" } } }, "hgnc_date_symbol_changed": "2009-07-07" }, "entity_type": "gene", "entity_name": "VPS16", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "33938619", "34013567" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "Mucopolysaccharidosis-like syndrome (biallelic)", "Dystonia Associated with Lysosomal Abnormalities (monoallelic)", "Dystonia 30, OMIM:619291" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 529, "hash_id": null, "name": "Lysosomal storage disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.3", "version_created": "2023-10-25T20:51:09.049904Z", "relevant_disorders": [ "R276" ], "stats": { "number_of_genes": 56, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": [] }, { "gene_data": { "alias": [ "MRP6", "EST349056", "MLP1", "URG7" ], "biotype": "protein_coding", "hgnc_id": "HGNC:57", "gene_name": "ATP binding cassette subfamily C member 6", "omim_gene": [ "603234" ], "alias_name": null, "gene_symbol": "ABCC6", "hgnc_symbol": "ABCC6", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "16:16242785-16317379", "ensembl_id": "ENSG00000091262" } }, "GRch38": { "90": { "location": "16:16148928-16223522", "ensembl_id": "ENSG00000091262" } } }, "hgnc_date_symbol_changed": "1997-10-27" }, "entity_type": "gene", "entity_name": "ABCC6", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "10835642" ], "evidence": [ "Expert Review Amber" ], "phenotypes": [ "PSEUDOXANTHOMA ELASTICUM, OMIM:264800", "Pseudoxanthoma elasticum, forme fruste, OMIM:177850" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 565, "hash_id": null, "name": "Rare genetic inflammatory skin disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.19", "version_created": "2024-04-17T09:59:57.070157Z", "relevant_disorders": [ "R332" ], "stats": { "number_of_genes": 70, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "EIF-2Balpha", "EIF-2B", "EIF2BA" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3257", "gene_name": "eukaryotic translation initiation factor 2B subunit alpha", "omim_gene": [ "606686" ], "alias_name": null, "gene_symbol": "EIF2B1", "hgnc_symbol": "EIF2B1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "12:124104953-124118313", "ensembl_id": "ENSG00000111361" } }, "GRch38": { "90": { "location": "12:123620406-123633766", "ensembl_id": "ENSG00000111361" } } }, "hgnc_date_symbol_changed": "1991-03-04" }, "entity_type": "gene", "entity_name": "EIF2B1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "27159321", "25527826", "28334938", "20301621", "24357685" ], "evidence": [ "Expert Review Green", "NHS GMS", "Yorkshire and North East GLH" ], "phenotypes": [ "Leukoencephalopathy with vanishing white matter, 603896" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 579, "hash_id": null, "name": "Adult onset leukodystrophy", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.24", "version_created": "2024-01-04T10:14:37.769836Z", "relevant_disorders": [ "White matter disorders - adult onset", "R62" ], "stats": { "number_of_genes": 98, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "DEP1", "HPTPeta", "CD148" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9673", "gene_name": "protein tyrosine phosphatase, receptor type J", "omim_gene": [ "600925" ], "alias_name": null, "gene_symbol": "PTPRJ", "hgnc_symbol": "PTPRJ", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "11:48002113-48189670", "ensembl_id": "ENSG00000149177" } }, "GRch38": { "90": { "location": "11:47980558-48170841", "ensembl_id": "ENSG00000149177" } } }, "hgnc_date_symbol_changed": "1994-09-14" }, "entity_type": "gene", "entity_name": "PTPRJ", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30591527" ], "evidence": [ "Expert Review Amber", "Literature" ], "phenotypes": [ "Thrombocytopenia", "spontaneous bleeding, small-sized platelets, and impaired platelet responses to the GPVI agonists collagen and convulxin." ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "watchlist" ], "panel": { "id": 175, "hash_id": "5763f32a8f620350a22bccde", "name": "Inherited bleeding disorders", "disease_group": "Haematological and immunological disorders", "disease_sub_group": "Haemostasis disorders", "status": "public", "version": "1.178", "version_created": "2024-04-24T16:33:37.770679Z", "relevant_disorders": [ "Inherited platelet disorders", "Monogenic thrombophilia", "Inherited bleeding and or platelet disorders", "Unprovoked Thrombosis before 40", "Monogenic venous thrombosis" ], "stats": { "number_of_genes": 119, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "DKFZp762I194" ], "biotype": "protein_coding", "hgnc_id": "HGNC:970", "gene_name": "Bardet-Biedl syndrome 5", "omim_gene": [ "603650" ], "alias_name": null, "gene_symbol": "BBS5", "hgnc_symbol": "BBS5", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "2:170335688-170382432", "ensembl_id": "ENSG00000163093" } }, "GRch38": { "90": { "location": "2:169479178-169506655", "ensembl_id": "ENSG00000163093" } } }, "hgnc_date_symbol_changed": "1998-03-25" }, "entity_type": "gene", "entity_name": "BBS5", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "15137946" ], "evidence": [ "NHS GMS", "Other", "Expert Review Green" ], "phenotypes": [ "Bardet Biedl syndrome 5, 615983" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 543, "hash_id": null, "name": "Bardet Biedl syndrome", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "2.4", "version_created": "2023-10-26T00:50:27.104172Z", "relevant_disorders": [ "R107" ], "stats": { "number_of_genes": 24, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:15533", "gene_name": "sprouty RTK signaling antagonist 4", "omim_gene": [ "607984" ], "alias_name": null, "gene_symbol": "SPRY4", "hgnc_symbol": "SPRY4", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "5:141689992-141706020", "ensembl_id": "ENSG00000187678" } }, "GRch38": { "90": { "location": "5:142310427-142326455", "ensembl_id": "ENSG00000187678" } } }, "hgnc_date_symbol_changed": "2002-01-22" }, "entity_type": "gene", "entity_name": "SPRY4", "confidence_level": "2", "penetrance": "Complete", "mode_of_pathogenicity": null, "publications": [ "23643382", "32389901" ], "evidence": [ "Literature", "Expert list", "Radboud University Medical Center, Nijmegen", "Expert Review Amber" ], "phenotypes": [ "Hypogonadotropic hypogonadism 17 with or without anosmia, OMIM:615266" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [ "monogenic-polygenic" ], "panel": { "id": 650, "hash_id": null, "name": "Hypogonadotropic hypogonadism (GMS)", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.18", "version_created": "2024-04-17T09:27:04.499719Z", "relevant_disorders": [ "Hypogonadotropic hypogonadism idiopathic", "R148" ], "stats": { "number_of_genes": 47, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": [] }, { "gene_data": { "alias": [ "pT49", "T49" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3696", "gene_name": "fibrinogen like 2", "omim_gene": [ "605351" ], "alias_name": null, "gene_symbol": "FGL2", "hgnc_symbol": "FGL2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "7:76822688-76829143", "ensembl_id": "ENSG00000127951" } }, "GRch38": { "90": { "location": "7:77193371-77199848", "ensembl_id": "ENSG00000127951" } } }, "hgnc_date_symbol_changed": "1999-09-07" }, "entity_type": "gene", "entity_name": "FGL2", "confidence_level": "2", "penetrance": "unknown", "mode_of_pathogenicity": null, "publications": [ "36243222" ], "evidence": [ "Expert Review Amber", "Literature" ], "phenotypes": [ "autoinflammatory syndrome, MONDO:0019751" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 398, "hash_id": null, "name": "Primary immunodeficiency or monogenic inflammatory bowel disease", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.202", "version_created": "2024-04-24T16:30:20.031169Z", "relevant_disorders": [ "Primary immunodeficiency disorders", "A- or hypo-gammaglobulinaemia", "Congenital neutropaenia", "Agranulocytosis", "Combined B and T cell defect", "Inherited complement deficiency", "SCID", "Primary immune disorder", "Primary immunodeficiency", "A-gammaglobulinaemia", "Agammaglobulinaemia", "hypo-gammaglobulinaemia", "hypogammaglobulinemia", "immune deficiency syndromes", "Severe combined immunodeficiency", "Congenital neutopenia", "Familial haemophagocytic lymphohistiocytic disorders", "Familial hemophagocytic lymphohistiocytic disorders", "PID", "Sepsis", "Disseminated non-tuberculous mycobacterial infection", "Primary immunodeficiency", "R15" ], "stats": { "number_of_genes": 560, "number_of_strs": 0, "number_of_regions": 2 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "HG20", "GABABR2", "GPRC3B" ], "biotype": "protein_coding", "hgnc_id": "HGNC:4507", "gene_name": "gamma-aminobutyric acid type B receptor subunit 2", "omim_gene": [ "607340" ], "alias_name": null, "gene_symbol": "GABBR2", "hgnc_symbol": "GABBR2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:101050391-101471479", "ensembl_id": "ENSG00000136928" } }, "GRch38": { "90": { "location": "9:98288082-98709197", "ensembl_id": "ENSG00000136928" } } }, "hgnc_date_symbol_changed": "2006-02-16" }, "entity_type": "gene", "entity_name": "GABBR2", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "SFARI" ], "phenotypes": [], "mode_of_inheritance": "", "tags": [], "panel": { "id": 657, "hash_id": null, "name": "Autism", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "0.36", "version_created": "2023-08-24T11:18:56.826577Z", "relevant_disorders": [], "stats": { "number_of_genes": 735, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ43070", "FLJ31318", "FLJ44279", "RP11-48C7.2", "NTEL1", "NTE-R1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:24768", "gene_name": "patatin like phospholipase domain containing 7", "omim_gene": [ "612122" ], "alias_name": null, "gene_symbol": "PNPLA7", "hgnc_symbol": "PNPLA7", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:140354404-140444986", "ensembl_id": "ENSG00000130653" } }, "GRch38": { "90": { "location": "9:137459953-137550534", "ensembl_id": "ENSG00000130653" } } }, "hgnc_date_symbol_changed": "2006-06-12" }, "entity_type": "gene", "entity_name": "PNPLA7", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "SFARI" ], "phenotypes": [], "mode_of_inheritance": "", "tags": [], "panel": { "id": 657, "hash_id": null, "name": "Autism", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "0.36", "version_created": "2023-08-24T11:18:56.826577Z", "relevant_disorders": [], "stats": { "number_of_genes": 735, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "HK33", "D1S2223E", "PMP1", "PMPI", "PXMP1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9713", "gene_name": "peroxisomal biogenesis factor 19", "omim_gene": [ "600279" ], "alias_name": [ "housekeeping gene, 33kD" ], "gene_symbol": "PEX19", "hgnc_symbol": "PEX19", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "1:160246602-160256138", "ensembl_id": "ENSG00000162735" } }, "GRch38": { "90": { "location": "1:160276812-160286348", "ensembl_id": "ENSG00000162735" } } }, "hgnc_date_symbol_changed": "2004-03-19" }, "entity_type": "gene", "entity_name": "PEX19", "confidence_level": "2", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "20683989" ], "evidence": [ "Expert Review Amber", "Expert list" ], "phenotypes": [ "Peroxisome biogenesis disorder 12A (Zellweger)\t614886" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 42, "hash_id": "568f920822c1fc1c79ca177a", "name": "Inherited white matter disorders", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "White matter disorders", "status": "public", "version": "1.180", "version_created": "2024-04-09T15:06:23.410873Z", "relevant_disorders": [ "Leukodystrophy - adult onset" ], "stats": { "number_of_genes": 174, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "THTR1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:10938", "gene_name": "solute carrier family 19 member 2", "omim_gene": [ "603941" ], "alias_name": null, "gene_symbol": "SLC19A2", "hgnc_symbol": "SLC19A2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "1:169433147-169455241", "ensembl_id": "ENSG00000117479" } }, "GRch38": { "90": { "location": "1:169463909-169486003", "ensembl_id": "ENSG00000117479" } } }, "hgnc_date_symbol_changed": "1999-04-09" }, "entity_type": "gene", "entity_name": "SLC19A2", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "Illumina TruGenome Clinical Sequencing Services", "Radboud University Medical Center, Nijmegen", "UKGTN" ], "phenotypes": [ "Thiamine-Responsive Megaloblastic Anemia", "Thiamine-responsive megaloblastic anemia syndrome, 249270", "(originally on the Imerslund-Grasbeck syndrome gene panel)" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 156, "hash_id": "5693974122c1fc251660fb1f", "name": "Unexplained kidney failure in young people", "disease_group": "Renal and urinary tract disorders", "disease_sub_group": "Disorders of function", "status": "public", "version": "1.119", "version_created": "2024-04-23T11:38:37.047065Z", "relevant_disorders": [ "Familial IgA nephropathy and IgA vasculitis", "End-stage renal disease - childhood onset" ], "stats": { "number_of_genes": 170, "number_of_strs": 0, "number_of_regions": 3 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "FBH", "FBH2", "FHH2" ], "biotype": "protein_coding", "hgnc_id": "HGNC:4379", "gene_name": "G protein subunit alpha 11", "omim_gene": [ "139313" ], "alias_name": null, "gene_symbol": "GNA11", "hgnc_symbol": "GNA11", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "19:3094408-3124002", "ensembl_id": "ENSG00000088256" } }, "GRch38": { "90": { "location": "19:3094410-3124004", "ensembl_id": "ENSG00000088256" } } }, "hgnc_date_symbol_changed": "1992-07-20" }, "entity_type": "gene", "entity_name": "GNA11", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "26778290" ], "evidence": [ "London North GLH", "NHS GMS", "Expert Review Green" ], "phenotypes": [ "Phakomatosis pigmentovascularis", "Extensive dermal melanocytosis" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 564, "hash_id": null, "name": "Mosaic skin disorders - deep sequencing", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "2.47", "version_created": "2024-04-02T15:41:50.209074Z", "relevant_disorders": [ "R327" ], "stats": { "number_of_genes": 57, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "BUBR1", "MAD3L", "Bub1A", "SSK1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:1149", "gene_name": "BUB1 mitotic checkpoint serine/threonine kinase B", "omim_gene": [ "602860" ], "alias_name": null, "gene_symbol": "BUB1B", "hgnc_symbol": "BUB1B", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "15:40453224-40513337", "ensembl_id": "ENSG00000156970" } }, "GRch38": { "90": { "location": "15:40161023-40221136", "ensembl_id": "ENSG00000156970" } } }, "hgnc_date_symbol_changed": "1998-03-25" }, "entity_type": "gene", "entity_name": "BUB1B", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Literature", "Expert Review Amber" ], "phenotypes": [ "Mosaic variegated aneuploidy syndrome 1, 257300" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 217, "hash_id": "59708b898f62035a04257dd8", "name": "Sarcoma cancer susceptibility", "disease_group": "Cancer Programme", "disease_sub_group": "Pertinent cancer susceptibility gene panel", "status": "public", "version": "1.25", "version_created": "2024-03-26T14:49:15.593827Z", "relevant_disorders": [ "Sarcoma", "Sarcoma pertinent cancer susceptibility" ], "stats": { "number_of_genes": 33, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Cancer Germline 100K", "slug": "cancer-germline-100k", "description": "Cancer Germline 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "uvomorulin", "CD324" ], "biotype": "protein_coding", "hgnc_id": "HGNC:1748", "gene_name": "cadherin 1", "omim_gene": [ "192090" ], "alias_name": [ "E-Cadherin" ], "gene_symbol": "CDH1", "hgnc_symbol": "CDH1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "16:68771128-68869451", "ensembl_id": "ENSG00000039068" } }, "GRch38": { "90": { "location": "16:68737225-68835548", "ensembl_id": "ENSG00000039068" } } }, "hgnc_date_symbol_changed": "1986-01-01" }, "entity_type": "gene", "entity_name": "CDH1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green", "Expert list" ], "phenotypes": [ "Hereditary Diffuse Gastric Cancer, Familial Lobular Breast Cancer" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 245, "hash_id": "595ce30f8f62036352471f39", "name": "Adult solid tumours cancer susceptibility", "disease_group": "Cancer Programme", "disease_sub_group": "Pertinent cancer susceptibility gene panel", "status": "public", "version": "2.29", "version_created": "2024-01-24T18:24:52.770842Z", "relevant_disorders": [ "Carcinoma of unknown primary", "Other", "Adult solid tumours pertinent cancer susceptibility" ], "stats": { "number_of_genes": 105, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Cancer Germline 100K", "slug": "cancer-germline-100k", "description": "Cancer Germline 100K" }, { "name": "GMS Cancer Germline Virtual", "slug": "gms-cancer-germline-virtual", "description": "This is a panel used for WGS germline analysis for the GMS." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "CGI-63", "NRBF1", "FASN2B", "ETR1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:19691", "gene_name": "mitochondrial trans-2-enoyl-CoA reductase", "omim_gene": [ "608205" ], "alias_name": [ "nuclear receptor binding factor 1", "mitochondrial 2-enoyl thioester reductase" ], "gene_symbol": "MECR", "hgnc_symbol": "MECR", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:29519385-29557454", "ensembl_id": "ENSG00000116353" } }, "GRch38": { "90": { "location": "1:29192873-29230942", "ensembl_id": "ENSG00000116353" } } }, "hgnc_date_symbol_changed": "2005-05-24" }, "entity_type": "gene", "entity_name": "MECR", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "27817865", "31137067" ], "evidence": [ "Expert Review Green", "Expert list" ], "phenotypes": [ "Dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities, 617282" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 186, "hash_id": "553f95e2bb5a1616e5ed45c8", "name": "Optic neuropathy", "disease_group": "Ophthalmological disorders", "disease_sub_group": "Posterior segment abnormalities", "status": "public", "version": "4.30", "version_created": "2024-04-12T23:02:01.271751Z", "relevant_disorders": [ "Inherited optic neuropathies", "R41" ], "stats": { "number_of_genes": 75, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "bA371L19.1", "hRFT2", "RFVT3" ], "biotype": "protein_coding", "hgnc_id": "HGNC:16187", "gene_name": "solute carrier family 52 member 3", "omim_gene": [ "613350" ], "alias_name": [ "hypothetical protein LOC113278" ], "gene_symbol": "SLC52A3", "hgnc_symbol": "SLC52A3", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "20:740724-749131", "ensembl_id": "ENSG00000101276" } }, "GRch38": { "90": { "location": "20:760080-776015", "ensembl_id": "ENSG00000101276" } } }, "hgnc_date_symbol_changed": "2012-02-29" }, "entity_type": "gene", "entity_name": "SLC52A3", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "Expert list" ], "phenotypes": [], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 258, "hash_id": "55b75d5b22c1fc05fd2345c9", "name": "Arthrogryposis", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neuromuscular disorders", "status": "public", "version": "5.31", "version_created": "2024-04-25T09:51:19.458728Z", "relevant_disorders": [ "Arthrogrythsis", "R83" ], "stats": { "number_of_genes": 298, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "PGIV", "MGC793" ], "biotype": "protein_coding", "hgnc_id": "HGNC:7692", "gene_name": "NADH:ubiquinone oxidoreductase subunit A8", "omim_gene": [ "603359" ], "alias_name": [ "complex I PGIV subunit" ], "gene_symbol": "NDUFA8", "hgnc_symbol": "NDUFA8", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:124894745-124922098", "ensembl_id": "ENSG00000119421" } }, "GRch38": { "90": { "location": "9:122144058-122159819", "ensembl_id": "ENSG00000119421" } } }, "hgnc_date_symbol_changed": "1997-12-17" }, "entity_type": "gene", "entity_name": "NDUFA8", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "15576045", "33153867", "32385911" ], "evidence": [ "Expert Review Green", "NHS GMS" ], "phenotypes": [ "Mitochondrial complex I deficiency, nuclear type 37, OMIM:619272" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 534, "hash_id": null, "name": "Mitochondrial disorder with complex I deficiency", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.8", "version_created": "2024-03-12T17:01:16.460906Z", "relevant_disorders": [ "R353" ], "stats": { "number_of_genes": 51, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "U5-116KD", "Snrp116", "Snu114", "SNRNP116" ], "biotype": "protein_coding", "hgnc_id": "HGNC:30858", "gene_name": "elongation factor Tu GTP binding domain containing 2", "omim_gene": [ "603892" ], "alias_name": [ "U5 snRNP specific protein, 116 kD" ], "gene_symbol": "EFTUD2", "hgnc_symbol": "EFTUD2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "17:42927311-42977030", "ensembl_id": "ENSG00000108883" } }, "GRch38": { "90": { "location": "17:44849943-44899662", "ensembl_id": "ENSG00000108883" } } }, "hgnc_date_symbol_changed": "2005-07-26" }, "entity_type": "gene", "entity_name": "EFTUD2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "24999515", "22305528" ], "evidence": [ "NHS GMS", "Expert Review Green", "Radboud University Medical Center, Nijmegen", "Literature" ], "phenotypes": [ "Mandibulofacial dysostosis, Guion-Almeida type 610536" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 162, "hash_id": "568f860222c1fc1c79ca1769", "name": "Severe microcephaly", "disease_group": "Dysmorphic and congenital abnormality syndromes", "disease_sub_group": "DNA repair disorders", "status": "public", "version": "4.82", "version_created": "2024-04-24T16:42:42.312224Z", "relevant_disorders": [ "Primary Microcephaly - Microcephalic Dwarfism Spectrum", "Severe microcephaly", "R88" ], "stats": { "number_of_genes": 264, "number_of_strs": 0, "number_of_regions": 6 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "MGC16372", "FLJ32660", "CILD21" ], "biotype": "protein_coding", "hgnc_id": "HGNC:24245", "gene_name": "dynein regulatory complex subunit 1", "omim_gene": [ "615288" ], "alias_name": null, "gene_symbol": "DRC1", "hgnc_symbol": "DRC1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "2:26624784-26679579", "ensembl_id": "ENSG00000157856" } }, "GRch38": { "90": { "location": "2:26401916-26456711", "ensembl_id": "ENSG00000157856" } } }, "hgnc_date_symbol_changed": "2013-03-14" }, "entity_type": "gene", "entity_name": "DRC1", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "NHS GMS" ], "phenotypes": [], "mode_of_inheritance": "", "tags": [], "panel": { "id": 549, "hash_id": null, "name": "Laterality disorders and isomerism", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.9", "version_created": "2024-04-09T15:06:19.095270Z", "relevant_disorders": [ "R139" ], "stats": { "number_of_genes": 65, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "CYPOR", "FLJ26468" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9208", "gene_name": "cytochrome p450 oxidoreductase", "omim_gene": [ "124015" ], "alias_name": null, "gene_symbol": "POR", "hgnc_symbol": "POR", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "7:75528518-75616173", "ensembl_id": "ENSG00000127948" } }, "GRch38": { "90": { "location": "7:75899200-75986855", "ensembl_id": "ENSG00000127948" } } }, "hgnc_date_symbol_changed": "1989-06-30" }, "entity_type": "gene", "entity_name": "POR", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green", "UKGTN", "Expert list", "Radboud University Medical Center, Nijmegen", "Illumina TruGenome Clinical Sequencing Services", "" ], "phenotypes": [ "Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis 201750", "Disordered steroidogenesis due to cytochrome P450 oxidoreductase 613571" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 309, "hash_id": "5693952f22c1fc251660fb1e", "name": "Skeletal dysplasia", "disease_group": "Skeletal disorders", "disease_sub_group": "Skeletal dysplasias", "status": "public", "version": "4.63", "version_created": "2024-04-24T16:44:07.715655Z", "relevant_disorders": [ "Unexplained skeletal dysplasia", "Skeletal dysplasia", "R104" ], "stats": { "number_of_genes": 618, "number_of_strs": 1, "number_of_regions": 6 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:1069", "gene_name": "bone morphogenetic protein 2", "omim_gene": [ "112261" ], "alias_name": null, "gene_symbol": "BMP2", "hgnc_symbol": "BMP2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "20:6748311-6760927", "ensembl_id": "ENSG00000125845" } }, "GRch38": { "90": { "location": "20:6767664-6780280", "ensembl_id": "ENSG00000125845" } } }, "hgnc_date_symbol_changed": "1990-06-11" }, "entity_type": "gene", "entity_name": "BMP2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "19327734", "21357617", "29198724" ], "evidence": [ "NHS GMS", "Expert Review Green", "Emory Genetics Laboratory", "Radboud University Medical Center, Nijmegen", "UKGTN", "" ], "phenotypes": [ "short stature, facial dysmorphism and skeletal anomalies with or without cardiac aomalies 617877.", "Brachydactyly, type A2 112600", "{HFE hemochromatosis, modifier of} 235200" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [ "cnv" ], "panel": { "id": 309, "hash_id": "5693952f22c1fc251660fb1e", "name": "Skeletal dysplasia", "disease_group": "Skeletal disorders", "disease_sub_group": "Skeletal dysplasias", "status": "public", "version": "4.63", "version_created": "2024-04-24T16:44:07.715655Z", "relevant_disorders": [ "Unexplained skeletal dysplasia", "Skeletal dysplasia", "R104" ], "stats": { "number_of_genes": 618, "number_of_strs": 1, "number_of_regions": 6 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:4696", "gene_name": "glucuronidase beta", "omim_gene": [ "611499" ], "alias_name": null, "gene_symbol": "GUSB", "hgnc_symbol": "GUSB", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "7:65425671-65447301", "ensembl_id": "ENSG00000169919" } }, "GRch38": { "90": { "location": "7:65960684-65982314", "ensembl_id": "ENSG00000169919" } } }, "hgnc_date_symbol_changed": "2001-06-22" }, "entity_type": "gene", "entity_name": "GUSB", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green", "Illumina TruGenome Clinical Sequencing Services", "Emory Genetics Laboratory", "UKGTN", "Expert list", "Radboud University Medical Center, Nijmegen", "" ], "phenotypes": [ "Mucopolysaccharidosis VII 253220" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 309, "hash_id": "5693952f22c1fc251660fb1e", "name": "Skeletal dysplasia", "disease_group": "Skeletal disorders", "disease_sub_group": "Skeletal dysplasias", "status": "public", "version": "4.63", "version_created": "2024-04-24T16:44:07.715655Z", "relevant_disorders": [ "Unexplained skeletal dysplasia", "Skeletal dysplasia", "R104" ], "stats": { "number_of_genes": 618, "number_of_strs": 1, "number_of_regions": 6 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "CD141" ], "biotype": "protein_coding", "hgnc_id": "HGNC:11784", "gene_name": "thrombomodulin", "omim_gene": [ "188040" ], "alias_name": null, "gene_symbol": "THBD", "hgnc_symbol": "THBD", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "20:23026270-23030378", "ensembl_id": "ENSG00000178726" } }, "GRch38": { "90": { "location": "20:23045633-23049741", "ensembl_id": "ENSG00000178726" } } }, "hgnc_date_symbol_changed": "2001-06-22" }, "entity_type": "gene", "entity_name": "THBD", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "North West GLH", "Yorkshire and North East GLH", "London South GLH", "NHS GMS", "Expert Review Green", "Wessex and West Midlands GLH" ], "phenotypes": [ "Thrombophilia due to thrombomodulin defect, OMIM:614486" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 516, "hash_id": null, "name": "Thrombophilia with a likely monogenic cause", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "2.5", "version_created": "2023-10-25T21:16:51.575708Z", "relevant_disorders": [ "Thrombophilia", "R97" ], "stats": { "number_of_genes": 21, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "CD110", "TPOR" ], "biotype": "protein_coding", "hgnc_id": "HGNC:7217", "gene_name": "MPL proto-oncogene, thrombopoietin receptor", "omim_gene": [ "159530" ], "alias_name": null, "gene_symbol": "MPL", "hgnc_symbol": "MPL", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:43803478-43818443", "ensembl_id": "ENSG00000117400" } }, "GRch38": { "90": { "location": "1:43337849-43352772", "ensembl_id": "ENSG00000117400" } } }, "hgnc_date_symbol_changed": "1990-09-10" }, "entity_type": "gene", "entity_name": "MPL", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "16470591", "11133753", "22180433" ], "evidence": [ "North West GLH", "Yorkshire and North East GLH", "London South GLH", "NHS GMS", "Expert Review Green", "Wessex and West Midlands GLH" ], "phenotypes": [ "Thrombocytopenia, congenital amegakaryocytic, OMIM:604498" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 545, "hash_id": null, "name": "Bleeding and platelet disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.10", "version_created": "2024-04-24T16:33:46.214396Z", "relevant_disorders": [ "R90" ], "stats": { "number_of_genes": 116, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:2209", "gene_name": "collagen type V alpha 1 chain", "omim_gene": [ "120215" ], "alias_name": [ "alpha 1 type V collagen" ], "gene_symbol": "COL5A1", "hgnc_symbol": "COL5A1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:137533620-137736686", "ensembl_id": "ENSG00000130635" } }, "GRch38": { "90": { "location": "9:134641774-134844843", "ensembl_id": "ENSG00000130635" } } }, "hgnc_date_symbol_changed": "1992-02-26" }, "entity_type": "gene", "entity_name": "COL5A1", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "22696272", "28485813", "23587214" ], "evidence": [ "Expert Review Amber", "NHS GMS", "Wessex and West Midlands GLH" ], "phenotypes": [ "130000 Ehlers-Danlos syndrome, classic type, 1" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 545, "hash_id": null, "name": "Bleeding and platelet disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.10", "version_created": "2024-04-24T16:33:46.214396Z", "relevant_disorders": [ "R90" ], "stats": { "number_of_genes": 116, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "RAFT1", "RAPT1", "FLJ44809" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3942", "gene_name": "mechanistic target of rapamycin kinase", "omim_gene": [ "601231" ], "alias_name": [ "FK506 binding protein 12-rapamycin associated protein 2", "rapamycin target protein", "FKBP12-rapamycin complex-associated protein 1", "FKBP-rapamycin associated protein", "rapamycin associated protein FRAP2", "dJ576K7.1 (FK506 binding protein 12-rapamycin associated protein 1)", "rapamycin and FKBP12 target 1", "mammalian target of rapamycin" ], "gene_symbol": "MTOR", "hgnc_symbol": "MTOR", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:11166592-11322564", "ensembl_id": "ENSG00000198793" } }, "GRch38": { "90": { "location": "1:11106535-11262507", "ensembl_id": "ENSG00000198793" } } }, "hgnc_date_symbol_changed": "2009-05-29" }, "entity_type": "gene", "entity_name": "MTOR", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "28475857", "27753196" ], "evidence": [ "Expert Review Green", "Expert list" ], "phenotypes": [ "Overgrowth with Intellectual disability", "Human overgrowth syndrome type" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 38, "hash_id": "56fa8eb88f62030f36e3026b", "name": "Beckwith-Wiedemann syndrome (BWS) and other congenital overgrowth disorders", "disease_group": "Growth disorders", "disease_sub_group": "Beckwith-Wiedemann syndrome (BWS) and other congenital overgrowth disorders", "status": "public", "version": "1.120", "version_created": "2023-08-09T11:26:35.704386Z", "relevant_disorders": [ "Atypical Beckwith-Wiedemann syndrome", "Classical Beckwith-Wiedemann syndrome", "Simpson-Golabi-Behmel syndrome", "Sotos syndrome", "Weaver syndrome" ], "stats": { "number_of_genes": 30, "number_of_strs": 0, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA1518" ], "biotype": "protein_coding", "hgnc_id": "HGNC:29300", "gene_name": "KN motif and ankyrin repeat domains 2", "omim_gene": [ "614610" ], "alias_name": null, "gene_symbol": "KANK2", "hgnc_symbol": "KANK2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "19:11274943-11308467", "ensembl_id": "ENSG00000197256" } }, "GRch38": { "90": { "location": "19:11164267-11197791", "ensembl_id": "ENSG00000197256" } } }, "hgnc_date_symbol_changed": "2008-01-29" }, "entity_type": "gene", "entity_name": "KANK2", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "J Clin Invest. 2015", "125(6):2375 2384" ], "evidence": [ "Expert Review Red" ], "phenotypes": [ "Early-Childhood-Onset Steroid-Resistant Nephrotic Syndrome" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 678, "hash_id": null, "name": "Unexplained young onset end-stage renal disease", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.41", "version_created": "2024-04-23T11:38:57.580498Z", "relevant_disorders": [ "Unexplained paediatric onset end-stage renal disease", "R257" ], "stats": { "number_of_genes": 302, "number_of_strs": 0, "number_of_regions": 3 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "K2p18.1", "TRESK-2", "TRESK2", "TRESK", "TRIK" ], "biotype": "protein_coding", "hgnc_id": "HGNC:19439", "gene_name": "potassium two pore domain channel subfamily K member 18", "omim_gene": [ "613655" ], "alias_name": [ "TWIK related spinal cord K+ channel" ], "gene_symbol": "KCNK18", "hgnc_symbol": "KCNK18", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "10:118957000-118969810", "ensembl_id": "ENSG00000186795" } }, "GRch38": { "90": { "location": "10:117197489-117210299", "ensembl_id": "ENSG00000186795" } } }, "hgnc_date_symbol_changed": "2005-01-07" }, "entity_type": "gene", "entity_name": "KCNK18", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "22355750", "20871611" ], "evidence": [ "Wessex and West Midlands GLH", "Yorkshire and North East GLH", "Expert Review Red", "London North GLH", "NHS GMS", "South West GLH" ], "phenotypes": [ "MIGRAINE, WITH OR WITHOUT AURA, SUSCEPTIBILITY TO, 13" ], "mode_of_inheritance": "Unknown", "tags": [], "panel": { "id": 474, "hash_id": null, "name": "Adult onset neurodegenerative disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.47", "version_created": "2024-04-15T09:57:08.902052Z", "relevant_disorders": [ "Neurodegenerative disorders - adult onset", "R58" ], "stats": { "number_of_genes": 414, "number_of_strs": 16, "number_of_regions": 4 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "rubicon", "rundataxin" ], "biotype": "protein_coding", "hgnc_id": "HGNC:28991", "gene_name": "RUN and cysteine rich domain containing beclin 1 interacting protein", "omim_gene": [ "613516" ], "alias_name": [ "RUN domain and cysteine-rich domain containing", "Beclin 1-interacting protein" ], "gene_symbol": "RUBCN", "hgnc_symbol": "RUBCN", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "3:197398264-197476598", "ensembl_id": "ENSG00000145016" } }, "GRch38": { "90": { "location": "3:197671393-197749727", "ensembl_id": "ENSG00000145016" } } }, "hgnc_date_symbol_changed": "2015-10-16" }, "entity_type": "gene", "entity_name": "RUBCN", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "PMID: 20826435" ], "evidence": [ "Expert Review Red" ], "phenotypes": [], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 474, "hash_id": null, "name": "Adult onset neurodegenerative disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.47", "version_created": "2024-04-15T09:57:08.902052Z", "relevant_disorders": [ "Neurodegenerative disorders - adult onset", "R58" ], "stats": { "number_of_genes": 414, "number_of_strs": 16, "number_of_regions": 4 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "FALDH" ], "biotype": "protein_coding", "hgnc_id": "HGNC:403", "gene_name": "aldehyde dehydrogenase 3 family member A2", "omim_gene": [ "609523" ], "alias_name": [ "fatty aldehyde dehydrogenase" ], "gene_symbol": "ALDH3A2", "hgnc_symbol": "ALDH3A2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "17:19551449-19580911", "ensembl_id": "ENSG00000072210" } }, "GRch38": { "90": { "location": "17:19648136-19677598", "ensembl_id": "ENSG00000072210" } } }, "hgnc_date_symbol_changed": "1996-06-14" }, "entity_type": "gene", "entity_name": "ALDH3A2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "27604308" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "Sjogren-Larsson syndrome, OMIM:270200" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 302, "hash_id": "5763f1518f620350a22bccdb", "name": "Undiagnosed metabolic disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Specific metabolic abnormalities", "status": "public", "version": "1.617", "version_created": "2024-04-16T14:22:42.770171Z", "relevant_disorders": [ "Undiagnosed Metabolic Panel" ], "stats": { "number_of_genes": 752, "number_of_strs": 1, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:11006", "gene_name": "solute carrier family 2 member 2", "omim_gene": [ "138160" ], "alias_name": null, "gene_symbol": "SLC2A2", "hgnc_symbol": "SLC2A2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "3:170714137-170744539", "ensembl_id": "ENSG00000163581" } }, "GRch38": { "90": { "location": "3:170996348-171026750", "ensembl_id": "ENSG00000163581" } } }, "hgnc_date_symbol_changed": "1989-01-13" }, "entity_type": "gene", "entity_name": "SLC2A2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "27604308" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "Glucose transporter 2 deficiency (Disorders of glucose transport)", "Glycogen storage disease type XI (Glycogen storage disorders)", "renal falcon syndrome, aminoaciduria phosphaturia, small stature, malabsorption, hepatomegaly and nephromegaly.", "Glycogen Storage Disorders- Liver", "Fanconi-Bickel Syndrome" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 302, "hash_id": "5763f1518f620350a22bccdb", "name": "Undiagnosed metabolic disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Specific metabolic abnormalities", "status": "public", "version": "1.617", "version_created": "2024-04-16T14:22:42.770171Z", "relevant_disorders": [ "Undiagnosed Metabolic Panel" ], "stats": { "number_of_genes": 752, "number_of_strs": 1, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "HCF-1", "HCF1", "CFF", "VCAF", "MGC70925", "PPP1R89" ], "biotype": "protein_coding", "hgnc_id": "HGNC:4839", "gene_name": "host cell factor C1", "omim_gene": [ "300019" ], "alias_name": [ "VP16-accessory protein", "protein phosphatase 1, regulatory subunit 89" ], "gene_symbol": "HCFC1", "hgnc_symbol": "HCFC1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "X:153213004-153237258", "ensembl_id": "ENSG00000172534" } }, "GRch38": { "90": { "location": "X:153947553-153971807", "ensembl_id": "ENSG00000172534" } } }, "hgnc_date_symbol_changed": "1994-10-14" }, "entity_type": "gene", "entity_name": "HCFC1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Emory Genetics Laboratory", "Radboud University Medical Center, Nijmegen", "Expert Review Green", "UKGTN" ], "phenotypes": [ "Mental retardation, X-linked 3 (methylmalonic acidemia and homocysteinemia, cblX type ) 309541" ], "mode_of_inheritance": "X-LINKED: hemizygous mutation in males, biallelic mutations in females", "tags": [], "panel": { "id": 302, "hash_id": "5763f1518f620350a22bccdb", "name": "Undiagnosed metabolic disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Specific metabolic abnormalities", "status": "public", "version": "1.617", "version_created": "2024-04-16T14:22:42.770171Z", "relevant_disorders": [ "Undiagnosed Metabolic Panel" ], "stats": { "number_of_genes": 752, "number_of_strs": 1, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "ttv" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3512", "gene_name": "exostosin glycosyltransferase 1", "omim_gene": [ "608177" ], "alias_name": [ "Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase", "N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase" ], "gene_symbol": "EXT1", "hgnc_symbol": "EXT1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "8:118806729-119124092", "ensembl_id": "ENSG00000182197" } }, "GRch38": { "90": { "location": "8:117794490-118111853", "ensembl_id": "ENSG00000182197" } } }, "hgnc_date_symbol_changed": "1993-05-04" }, "entity_type": "gene", "entity_name": "EXT1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "27604308" ], "evidence": [ "Expert Review Green", "Literature" ], "phenotypes": [ "Multiple exostoses type I (Disorders of protein O-glycosylation, O-xylosylglycan synthesis deficiencies)", "Exostoses, multiple, type 1 133700" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 302, "hash_id": "5763f1518f620350a22bccdb", "name": "Undiagnosed metabolic disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Specific metabolic abnormalities", "status": "public", "version": "1.617", "version_created": "2024-04-16T14:22:42.770171Z", "relevant_disorders": [ "Undiagnosed Metabolic Panel" ], "stats": { "number_of_genes": 752, "number_of_strs": 1, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:4455", "gene_name": "glycerol-3-phosphate dehydrogenase 1", "omim_gene": [ "138420" ], "alias_name": null, "gene_symbol": "GPD1", "hgnc_symbol": "GPD1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "12:50497602-50505102", "ensembl_id": "ENSG00000167588" } }, "GRch38": { "90": { "location": "12:50103819-50111319", "ensembl_id": "ENSG00000167588" } } }, "hgnc_date_symbol_changed": "2001-06-22" }, "entity_type": "gene", "entity_name": "GPD1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "24549054", "22226083" ], "evidence": [ "Expert Review Green", "Expert Review Green", "Literature" ], "phenotypes": [ "Hypertriglyceridemia, transient infantile, 614480" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 467, "hash_id": null, "name": "Likely inborn error of metabolism - targeted testing not possible", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.137", "version_created": "2024-04-16T14:24:15.739554Z", "relevant_disorders": [ "Likely inborn error of metabolism - targeted testing not possible", "Likely inborn error of metabolism", "Inborn errors of metabolism", "R98" ], "stats": { "number_of_genes": 934, "number_of_strs": 3, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "CALC", "EFHA3", "FLJ12684" ], "biotype": "protein_coding", "hgnc_id": "HGNC:1530", "gene_name": "mitochondrial calcium uptake 1", "omim_gene": [ "605084" ], "alias_name": null, "gene_symbol": "MICU1", "hgnc_symbol": "MICU1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "10:74127098-74385899", "ensembl_id": "ENSG00000107745" } }, "GRch38": { "90": { "location": "10:72367327-72626191", "ensembl_id": "ENSG00000107745" } } }, "hgnc_date_symbol_changed": "2011-06-23" }, "entity_type": "gene", "entity_name": "MICU1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "24336167", "29721912" ], "evidence": [ "Expert Review Green", "Expert Review Green", "Victorian Clinical Genetics Services" ], "phenotypes": [ "Myopathy with extrapyramidal signs 615673" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 467, "hash_id": null, "name": "Likely inborn error of metabolism - targeted testing not possible", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.137", "version_created": "2024-04-16T14:24:15.739554Z", "relevant_disorders": [ "Likely inborn error of metabolism - targeted testing not possible", "Likely inborn error of metabolism", "Inborn errors of metabolism", "R98" ], "stats": { "number_of_genes": 934, "number_of_strs": 3, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "PMP35", "PAF-1", "RNF72", "ZWS3" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9717", "gene_name": "peroxisomal biogenesis factor 2", "omim_gene": [ "170993" ], "alias_name": [ "Zellweger syndrome", "peroxin 2" ], "gene_symbol": "PEX2", "hgnc_symbol": "PEX2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "8:77892494-77913280", "ensembl_id": "ENSG00000164751" } }, "GRch38": { "90": { "location": "8:76980258-77001044", "ensembl_id": "ENSG00000164751" } } }, "hgnc_date_symbol_changed": "2010-01-25" }, "entity_type": "gene", "entity_name": "PEX2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "27604308" ], "evidence": [ "London North GLH", "NHS GMS", "Expert Review Green" ], "phenotypes": [ "Disorders of peroxisome biogenesis", "Peroxisome biogenesis disorder 5A (Zellweger), 614866", "Peroxisome biogenesis disorder 5B, 614867" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 467, "hash_id": null, "name": "Likely inborn error of metabolism - targeted testing not possible", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.137", "version_created": "2024-04-16T14:24:15.739554Z", "relevant_disorders": [ "Likely inborn error of metabolism - targeted testing not possible", "Likely inborn error of metabolism", "Inborn errors of metabolism", "R98" ], "stats": { "number_of_genes": 934, "number_of_strs": 3, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "DLDH" ], "biotype": "protein_coding", "hgnc_id": "HGNC:2898", "gene_name": "dihydrolipoamide dehydrogenase", "omim_gene": [ "238331" ], "alias_name": [ "E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex" ], "gene_symbol": "DLD", "hgnc_symbol": "DLD", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "7:107531415-107572175", "ensembl_id": "ENSG00000091140" } }, "GRch38": { "90": { "location": "7:107890970-107931730", "ensembl_id": "ENSG00000091140" } } }, "hgnc_date_symbol_changed": "1988-05-11" }, "entity_type": "gene", "entity_name": "DLD", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green" ], "phenotypes": [ "DIHYDROLIPOAMIDE DEHYDROGENASE DEFICIENCY, 246900" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 539, "hash_id": null, "name": "Possible mitochondrial disorder - nuclear genes", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.105", "version_created": "2024-04-12T22:10:12.163485Z", "relevant_disorders": [ "R63" ], "stats": { "number_of_genes": 381, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA1592" ], "biotype": "protein_coding", "hgnc_id": "HGNC:105", "gene_name": "cyclin and CBS domain divalent metal cation transport mediator 4", "omim_gene": [ "607805" ], "alias_name": null, "gene_symbol": "CNNM4", "hgnc_symbol": "CNNM4", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "2:97426639-97477628", "ensembl_id": "ENSG00000158158" } }, "GRch38": { "90": { "location": "2:96760902-96811891", "ensembl_id": "ENSG00000158158" } } }, "hgnc_date_symbol_changed": "1999-12-07" }, "entity_type": "gene", "entity_name": "CNNM4", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "Other", "Emory Genetics Laboratory" ], "phenotypes": [ "Jalili syndrome, 217080 (includes amelogenesis imperfecta)", "cone-rod dystrophy and amelogenesis imperfecta" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 269, "hash_id": "58c7f3c78f620328d77ce70e", "name": "Amelogenesis imperfecta", "disease_group": "Skeletal disorders", "disease_sub_group": "Skeletal dysplasias", "status": "public", "version": "3.3", "version_created": "2023-10-26T10:36:53.878055Z", "relevant_disorders": [ "Amelogenesis Imperfecta", "R340" ], "stats": { "number_of_genes": 40, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:1246", "gene_name": "complement C1r", "omim_gene": [ "613785" ], "alias_name": null, "gene_symbol": "C1R", "hgnc_symbol": "C1R", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "12:7187513-7245203", "ensembl_id": "ENSG00000159403" } }, "GRch38": { "90": { "location": "12:7080209-7092607", "ensembl_id": "ENSG00000159403" } } }, "hgnc_date_symbol_changed": "2001-06-22" }, "entity_type": "gene", "entity_name": "C1R", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "27745832", "28306229", "28306225" ], "evidence": [ "NHS GMS", "Expert Review Green", "Literature" ], "phenotypes": [ "Ehlers-Danlos syndrome, periodontal type, 1, OMIM:130080" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 53, "hash_id": "588728f38f62030cf7152165", "name": "Ehlers Danlos syndrome with a likely monogenic cause", "disease_group": "Rheumatological disorders", "disease_sub_group": "Connective tissues disorders", "status": "public", "version": "3.12", "version_created": "2024-04-10T20:15:43.968357Z", "relevant_disorders": [ "Classical Ehlers Danlos Syndrome", "Classical Ehlers-Danlos Syndrome", "Ehlers-Danlos Syndrome (unusual phenotypes e.g. absent pain sense)", "Ehlers-Danlos syndrome type 3", "Kyphoscoliotic Ehlers-Danlos syndrome", "EDS", "Ehlers-Danlos syndromes", "Ehlers Danlos syndromes", "R101" ], "stats": { "number_of_genes": 80, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "EST140535", "Atm1p", "ASAT" ], "biotype": "protein_coding", "hgnc_id": "HGNC:48", "gene_name": "ATP binding cassette subfamily B member 7", "omim_gene": [ "300135" ], "alias_name": null, "gene_symbol": "ABCB7", "hgnc_symbol": "ABCB7", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "X:74273115-74376567", "ensembl_id": "ENSG00000131269" } }, "GRch38": { "90": { "location": "X:75053172-75156732", "ensembl_id": "ENSG00000131269" } } }, "hgnc_date_symbol_changed": "1997-09-12" }, "entity_type": "gene", "entity_name": "ABCB7", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "PAGE DD-Gene2Phenotype" ], "phenotypes": [ "ANEMIA, SIDEROBLASTIC, WITH ATAXIA" ], "mode_of_inheritance": "X-LINKED: hemizygous mutation in males, biallelic mutations in females", "tags": [], "panel": { "id": 478, "hash_id": null, "name": "Fetal anomalies", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.164", "version_created": "2024-04-24T16:44:01.832419Z", "relevant_disorders": [ "R21", "Fetal anomalies with a likely genetic cause", "Fetal anomalies with a likely genetic cause - non urgent", "R412" ], "stats": { "number_of_genes": 1988, "number_of_strs": 2, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "CTNS-LSB", "PQLC4" ], "biotype": "protein_coding", "hgnc_id": "HGNC:2518", "gene_name": "cystinosin, lysosomal cystine transporter", "omim_gene": [ "606272" ], "alias_name": null, "gene_symbol": "CTNS", "hgnc_symbol": "CTNS", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "17:3539762-3564836", "ensembl_id": "ENSG00000040531" } }, "GRch38": { "90": { "location": "17:3636468-3661542", "ensembl_id": "ENSG00000040531" } } }, "hgnc_date_symbol_changed": "1998-07-15" }, "entity_type": "gene", "entity_name": "CTNS", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "PAGE DD-Gene2Phenotype" ], "phenotypes": [ "CYSTINOSIS NEPHROPATHIC TYPE", "CYSTINOSIS LATE-ONSET JUVENILE OR ADOLESCENT NEPHROPATHIC TYPE", "CYSTINOSIS ADULT NON-NEPHROPATHIC TYPE" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 478, "hash_id": null, "name": "Fetal anomalies", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.164", "version_created": "2024-04-24T16:44:01.832419Z", "relevant_disorders": [ "R21", "Fetal anomalies with a likely genetic cause", "Fetal anomalies with a likely genetic cause - non urgent", "R412" ], "stats": { "number_of_genes": 1988, "number_of_strs": 2, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:333", "gene_name": "angiotensinogen", "omim_gene": [ "106150" ], "alias_name": [ "alpha-1 antiproteinase, antitrypsin" ], "gene_symbol": "AGT", "hgnc_symbol": "AGT", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:230838269-230850043", "ensembl_id": "ENSG00000135744" } }, "GRch38": { "90": { "location": "1:230702523-230714297", "ensembl_id": "ENSG00000135744" } } }, "hgnc_date_symbol_changed": "2001-06-29" }, "entity_type": "gene", "entity_name": "AGT", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "28976722" ], "evidence": [ "Expert Review Amber", "Expert Review", "Literature" ], "phenotypes": [ "Renal tubular dysgenesis, OMIM:267430" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 478, "hash_id": null, "name": "Fetal anomalies", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.164", "version_created": "2024-04-24T16:44:01.832419Z", "relevant_disorders": [ "R21", "Fetal anomalies with a likely genetic cause", "Fetal anomalies with a likely genetic cause - non urgent", "R412" ], "stats": { "number_of_genes": 1988, "number_of_strs": 2, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "TDP-43", "ALS10" ], "biotype": "protein_coding", "hgnc_id": "HGNC:11571", "gene_name": "TAR DNA binding protein", "omim_gene": [ "605078" ], "alias_name": null, "gene_symbol": "TARDBP", "hgnc_symbol": "TARDBP", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "1:11072414-11085796", "ensembl_id": "ENSG00000120948" } }, "GRch38": { "90": { "location": "1:11012344-11026420", "ensembl_id": "ENSG00000120948" } } }, "hgnc_date_symbol_changed": "2000-01-28" }, "entity_type": "gene", "entity_name": "TARDBP", "confidence_level": "3", "penetrance": "Incomplete", "mode_of_pathogenicity": "", "publications": [ "23881933" ], "evidence": [ "Expert Review Green", "Expert", "Radboud University Medical Center, Nijmegen", "Illumina TruGenome Clinical Sequencing Services", "UKGTN" ], "phenotypes": [ "Amyotrophic Lateral Sclerosis, Dominant", "Amyotrophic lateral sclerosis 10, with or without FTD, 612069" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [ "polygenic" ], "panel": { "id": 263, "hash_id": "55d30b0322c1fc2ff2a5bf7b", "name": "Amyotrophic lateral sclerosis/motor neuron disease", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodegenerative disorders", "status": "public", "version": "1.69", "version_created": "2024-01-24T10:13:10.924246Z", "relevant_disorders": [ "Amyotrophic lateral sclerosis or motor neuron disease" ], "stats": { "number_of_genes": 38, "number_of_strs": 4, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" } ] }, "transcript": null }, { "gene_data": { "alias": [ "SERA", "PGDH", "PDG" ], "biotype": "protein_coding", "hgnc_id": "HGNC:8923", "gene_name": "phosphoglycerate dehydrogenase", "omim_gene": [ "606879" ], "alias_name": null, "gene_symbol": "PHGDH", "hgnc_symbol": "PHGDH", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:120202421-120286838", "ensembl_id": "ENSG00000092621" } }, "GRch38": { "90": { "location": "1:119648411-119744226", "ensembl_id": "ENSG00000092621" } } }, "hgnc_date_symbol_changed": "1999-11-22" }, "entity_type": "gene", "entity_name": "PHGDH", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "11034457", "11055895", "24836451", "19235232" ], "evidence": [ "DD-Gene2Phenotype", "Expert Review Green" ], "phenotypes": [ "PHOSPHOGLYCERATE DEHYDROGENASE DEFICIENCY 601815", "NEU-LAXOVA SYNDROME 256520" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "MGC22916" ], "biotype": "protein_coding", "hgnc_id": "HGNC:21701", "gene_name": "BRCA1 associated ATM activator 1", "omim_gene": [ "614506" ], "alias_name": [ "BRCA1-associated protein required for ATM activation protein 1" ], "gene_symbol": "BRAT1", "hgnc_symbol": "BRAT1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "7:2577511-2595361", "ensembl_id": "ENSG00000106009" } }, "GRch38": { "90": { "location": "7:2537877-2555727", "ensembl_id": "ENSG00000106009" } } }, "hgnc_date_symbol_changed": "2011-03-22" }, "entity_type": "gene", "entity_name": "BRAT1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "22279524" ], "evidence": [ "Expert Review Green", "DD-Gene2Phenotype" ], "phenotypes": [ "LETHAL NEONATAL RIGIDITY AND SEIZURE SYNDROME 614498" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:11474", "gene_name": "SURF1, cytochrome c oxidase assembly factor", "omim_gene": [ "185620" ], "alias_name": [ "surfeit locus protein 1" ], "gene_symbol": "SURF1", "hgnc_symbol": "SURF1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:136218610-136223552", "ensembl_id": "ENSG00000148290" } }, "GRch38": { "90": { "location": "9:133351755-133356676", "ensembl_id": "ENSG00000148290" } } }, "hgnc_date_symbol_changed": "1989-11-29" }, "entity_type": "gene", "entity_name": "SURF1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "DD-Gene2Phenotype", "Expert Review Green" ], "phenotypes": [ "LEIGH SYNDROME 256000", "COMPLEX IV DEFICIENCY 220110" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ20345", "POC12", "BBS13" ], "biotype": "protein_coding", "hgnc_id": "HGNC:7121", "gene_name": "Meckel syndrome, type 1", "omim_gene": [ "609883" ], "alias_name": [ "POC12 centriolar protein homolog (Chlamydomonas)" ], "gene_symbol": "MKS1", "hgnc_symbol": "MKS1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "17:56282803-56296966", "ensembl_id": "ENSG00000011143" } }, "GRch38": { "90": { "location": "17:58205437-58219605", "ensembl_id": "ENSG00000011143" } } }, "hgnc_date_symbol_changed": "1995-11-07" }, "entity_type": "gene", "entity_name": "MKS1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "17377820", "16415886" ], "evidence": [ "DD-Gene2Phenotype", "Expert Review Green" ], "phenotypes": [ "MECKEL SYNDROME TYPE 1 249000", "BARDET-BIEDL SYNDROME TYPE 13 209900" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ34884" ], "biotype": "protein_coding", "hgnc_id": "HGNC:25118", "gene_name": "OTU deubiquitinase with linear linkage specificity", "omim_gene": [ "615712" ], "alias_name": [ "gumby" ], "gene_symbol": "OTULIN", "hgnc_symbol": "OTULIN", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "5:14664773-14699820", "ensembl_id": "ENSG00000154124" } }, "GRch38": { "90": { "location": "5:14664664-14699711", "ensembl_id": "ENSG00000154124" } } }, "hgnc_date_symbol_changed": "2014-03-11" }, "entity_type": "gene", "entity_name": "OTULIN", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "27523608", "27686184", "27559085" ], "evidence": [ "DD-Gene2Phenotype", "Expert Review Green" ], "phenotypes": [ "Otulin-related auto inflammatory syndrome" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:29162", "gene_name": "family with sequence similarity 149 member B1", "omim_gene": null, "alias_name": null, "gene_symbol": "FAM149B1", "hgnc_symbol": "FAM149B1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "10:74927924-75004262", "ensembl_id": "ENSG00000138286" } }, "GRch38": { "90": { "location": "10:73168166-73244504", "ensembl_id": "ENSG00000138286" } } }, "hgnc_date_symbol_changed": "2007-11-14" }, "entity_type": "gene", "entity_name": "FAM149B1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30905400" ], "evidence": [ "Expert Review Green", "DD-Gene2Phenotype" ], "phenotypes": [ "Ciliopathy-related syndromic intellectual disability" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "gene-checked" ], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "HSPC203" ], "biotype": "protein_coding", "hgnc_id": "HGNC:20213", "gene_name": "COX16, cytochrome c oxidase assembly homolog", "omim_gene": null, "alias_name": null, "gene_symbol": "COX16", "hgnc_symbol": "COX16", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "14:70791798-70826448", "ensembl_id": "ENSG00000133983" } }, "GRch38": { "90": { "location": "14:70325081-70359731", "ensembl_id": "ENSG00000133983" } } }, "hgnc_date_symbol_changed": "2008-06-23" }, "entity_type": "gene", "entity_name": "COX16", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "33169484" ], "evidence": [ "DD-Gene2Phenotype", "Expert Review Green" ], "phenotypes": [ "COX16-related Developmental Disorder" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "gene-checked" ], "panel": { "id": 484, "hash_id": null, "name": "DDG2P", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.88", "version_created": "2024-04-24T16:40:09.430985Z", "relevant_disorders": [], "stats": { "number_of_genes": 2349, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" } ] }, "transcript": null }, { "gene_data": { "alias": [ "HLGP85", "LIMPII", "SR-BII", "LIMP-2" ], "biotype": "protein_coding", "hgnc_id": "HGNC:1665", "gene_name": "scavenger receptor class B member 2", "omim_gene": [ "602257" ], "alias_name": null, "gene_symbol": "SCARB2", "hgnc_symbol": "SCARB2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "4:77079890-77135046", "ensembl_id": "ENSG00000138760" } }, "GRch38": { "90": { "location": "4:76158733-76234536", "ensembl_id": "ENSG00000138760" } } }, "hgnc_date_symbol_changed": "2002-09-06" }, "entity_type": "gene", "entity_name": "SCARB2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "18308289", "21670406", "18424452", "29605618" ], "evidence": [ "Wessex and West Midlands GLH", "NHS GMS", "NIHRBR-RD Consortium SPEED_v3.0_20170404", "Expert Review Green", "Expert" ], "phenotypes": [ "Epilepsy, progressive myoclonic 4, with or without renal failure 254900" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 402, "hash_id": null, "name": "Early onset or syndromic epilepsy", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Inherited Epilepsy Syndromes", "status": "public", "version": "4.196", "version_created": "2024-04-24T16:35:47.828337Z", "relevant_disorders": [ "Epilepsy Plus", "Epilepsy plus other features", "Genetic Epilepsy Syndromes", "Epileptic encephalopathy", "Familial Focal Epilepsies", "Familial Genetic Generalised Epilepsies", "Genetic Epilepsies with Febrile Seizures Plus (GEFS+)", "Genetic Epilepsies with Febrile Seizures Plus", "Early onset or syndromic epilepsy", "Genetic epilepsy syndromes", "R59" ], "stats": { "number_of_genes": 828, "number_of_strs": 2, "number_of_regions": 17 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [ "LGMD2M" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3622", "gene_name": "fukutin", "omim_gene": [ "607440" ], "alias_name": null, "gene_symbol": "FKTN", "hgnc_symbol": "FKTN", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "9:108320411-108403399", "ensembl_id": "ENSG00000106692" } }, "GRch38": { "90": { "location": "9:105558130-105641118", "ensembl_id": "ENSG00000106692" } } }, "hgnc_date_symbol_changed": "2007-11-21" }, "entity_type": "gene", "entity_name": "FKTN", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30220444", "9690476", "20961758" ], "evidence": [ "Wessex and West Midlands GLH", "NHS GMS", "Expert Review Green", "Victorian Clinical Genetics Services" ], "phenotypes": [ "Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4, 253800", "seizures", "Walker-warburg syndrome or muscle-eye-brain disease", "Fukuyama congenital muscular dystrophy" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 402, "hash_id": null, "name": "Early onset or syndromic epilepsy", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Inherited Epilepsy Syndromes", "status": "public", "version": "4.196", "version_created": "2024-04-24T16:35:47.828337Z", "relevant_disorders": [ "Epilepsy Plus", "Epilepsy plus other features", "Genetic Epilepsy Syndromes", "Epileptic encephalopathy", "Familial Focal Epilepsies", "Familial Genetic Generalised Epilepsies", "Genetic Epilepsies with Febrile Seizures Plus (GEFS+)", "Genetic Epilepsies with Febrile Seizures Plus", "Early onset or syndromic epilepsy", "Genetic epilepsy syndromes", "R59" ], "stats": { "number_of_genes": 828, "number_of_strs": 2, "number_of_regions": 17 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [ "DKFZp781M2411", "RalGAPbeta" ], "biotype": "protein_coding", "hgnc_id": "HGNC:29221", "gene_name": "Ral GTPase activating protein non-catalytic beta subunit", "omim_gene": null, "alias_name": null, "gene_symbol": "RALGAPB", "hgnc_symbol": "RALGAPB", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "20:37101459-37207504", "ensembl_id": "ENSG00000170471" } }, "GRch38": { "90": { "location": "20:38472816-38578861", "ensembl_id": "ENSG00000170471" } } }, "hgnc_date_symbol_changed": "2009-09-09" }, "entity_type": "gene", "entity_name": "RALGAPB", "confidence_level": "1", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "32853829" ], "evidence": [ "Expert Review Red", "Literature" ], "phenotypes": [ "Neurodevelopmental disorders, autism" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 402, "hash_id": null, "name": "Early onset or syndromic epilepsy", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Inherited Epilepsy Syndromes", "status": "public", "version": "4.196", "version_created": "2024-04-24T16:35:47.828337Z", "relevant_disorders": [ "Epilepsy Plus", "Epilepsy plus other features", "Genetic Epilepsy Syndromes", "Epileptic encephalopathy", "Familial Focal Epilepsies", "Familial Genetic Generalised Epilepsies", "Genetic Epilepsies with Febrile Seizures Plus (GEFS+)", "Genetic Epilepsies with Febrile Seizures Plus", "Early onset or syndromic epilepsy", "Genetic epilepsy syndromes", "R59" ], "stats": { "number_of_genes": 828, "number_of_strs": 2, "number_of_regions": 17 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ10766", "KIAA0483", "Fbx28", "CENP-30" ], "biotype": "protein_coding", "hgnc_id": "HGNC:29046", "gene_name": "F-box protein 28", "omim_gene": [ "609100" ], "alias_name": [ "centromere protein 30" ], "gene_symbol": "FBXO28", "hgnc_symbol": "FBXO28", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:224301789-224349749", "ensembl_id": "ENSG00000143756" } }, "GRch38": { "90": { "location": "1:224114087-224162047", "ensembl_id": "ENSG00000143756" } } }, "hgnc_date_symbol_changed": "2004-06-15" }, "entity_type": "gene", "entity_name": "FBXO28", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30160831", "33280099" ], "evidence": [ "NHS GMS", "Expert Review Green", "Literature" ], "phenotypes": [ "Developmental and epileptic encephalopathy 100, OMIM:619777", "developmental and epileptic encephalopathy 100, MONDO:0030695" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 402, "hash_id": null, "name": "Early onset or syndromic epilepsy", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Inherited Epilepsy Syndromes", "status": "public", "version": "4.196", "version_created": "2024-04-24T16:35:47.828337Z", "relevant_disorders": [ "Epilepsy Plus", "Epilepsy plus other features", "Genetic Epilepsy Syndromes", "Epileptic encephalopathy", "Familial Focal Epilepsies", "Familial Genetic Generalised Epilepsies", "Genetic Epilepsies with Febrile Seizures Plus (GEFS+)", "Genetic Epilepsies with Febrile Seizures Plus", "Early onset or syndromic epilepsy", "Genetic epilepsy syndromes", "R59" ], "stats": { "number_of_genes": 828, "number_of_strs": 2, "number_of_regions": 17 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:23066", "gene_name": "trafficking protein particle complex 6B", "omim_gene": [ "610397" ], "alias_name": null, "gene_symbol": "TRAPPC6B", "hgnc_symbol": "TRAPPC6B", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "14:39617015-39639736", "ensembl_id": "ENSG00000182400" } }, "GRch38": { "90": { "location": "14:39147811-39170532", "ensembl_id": "ENSG00000182400" } } }, "hgnc_date_symbol_changed": "2003-09-01" }, "entity_type": "gene", "entity_name": "TRAPPC6B", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "28626029", "28397838", "31687267" ], "evidence": [ "Expert Review Amber", "Wessex and West Midlands GLH", "NHS GMS", "Victorian Clinical Genetics Services" ], "phenotypes": [ "Neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy, OMIM:617862" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 402, "hash_id": null, "name": "Early onset or syndromic epilepsy", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Inherited Epilepsy Syndromes", "status": "public", "version": "4.196", "version_created": "2024-04-24T16:35:47.828337Z", "relevant_disorders": [ "Epilepsy Plus", "Epilepsy plus other features", "Genetic Epilepsy Syndromes", "Epileptic encephalopathy", "Familial Focal Epilepsies", "Familial Genetic Generalised Epilepsies", "Genetic Epilepsies with Febrile Seizures Plus (GEFS+)", "Genetic Epilepsies with Febrile Seizures Plus", "Early onset or syndromic epilepsy", "Genetic epilepsy syndromes", "R59" ], "stats": { "number_of_genes": 828, "number_of_strs": 2, "number_of_regions": 17 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [ "MGC19780" ], "biotype": "protein_coding", "hgnc_id": "HGNC:28287", "gene_name": "ALG14, UDP-N-acetylglucosaminyltransferase subunit", "omim_gene": [ "612866" ], "alias_name": null, "gene_symbol": "ALG14", "hgnc_symbol": "ALG14", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:95439963-95538501", "ensembl_id": "ENSG00000172339" } }, "GRch38": { "90": { "location": "1:94974407-95072945", "ensembl_id": "ENSG00000172339" } } }, "hgnc_date_symbol_changed": "2005-08-09" }, "entity_type": "gene", "entity_name": "ALG14", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30221345", "23404334", "28733338" ], "evidence": [ "Expert Review Amber", "Expert list" ], "phenotypes": [ "Myasthenic syndrome, congenital, 15, without tubular aggregates 616227", "Intellectual disability" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:773", "gene_name": "astrotactin 1", "omim_gene": [ "600904" ], "alias_name": null, "gene_symbol": "ASTN1", "hgnc_symbol": "ASTN1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "1:176826438-177134109", "ensembl_id": "ENSG00000152092" } }, "GRch38": { "90": { "location": "1:176857302-177164973", "ensembl_id": "ENSG00000152092" } } }, "hgnc_date_symbol_changed": "2006-08-24" }, "entity_type": "gene", "entity_name": "ASTN1", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "29706646", "27431290", "26539891" ], "evidence": [ "Expert Review Amber", "Expert list" ], "phenotypes": [ "Intellectual disability" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "watchlist" ], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "SOTV" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3513", "gene_name": "exostosin glycosyltransferase 2", "omim_gene": [ "608210" ], "alias_name": [ "Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase", "N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase" ], "gene_symbol": "EXT2", "hgnc_symbol": "EXT2", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:44117099-44266979", "ensembl_id": "ENSG00000151348" } }, "GRch38": { "90": { "location": "11:44095549-44245429", "ensembl_id": "ENSG00000151348" } } }, "hgnc_date_symbol_changed": "1994-06-01" }, "entity_type": "gene", "entity_name": "EXT2", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "25529582", "26246518", "30997052", "30288735" ], "evidence": [ "NHS GMS", "Expert Review Green", "BRIDGE study SPEED NEURO Tier1 Gene" ], "phenotypes": [ "Seizures, scoliosis, and macrocephaly syndrome, 616682", "autosomal recessive EXT2-related syndrome" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "FIB1", "KIAA1773", "FLJ11790", "CDHR6" ], "biotype": "protein_coding", "hgnc_id": "HGNC:13681", "gene_name": "dachsous cadherin-related 1", "omim_gene": [ "603057" ], "alias_name": [ "cadherin-related family member 6" ], "gene_symbol": "DCHS1", "hgnc_symbol": "DCHS1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:6642556-6677085", "ensembl_id": "ENSG00000166341" } }, "GRch38": { "90": { "location": "11:6621323-6655854", "ensembl_id": "ENSG00000166341" } } }, "hgnc_date_symbol_changed": "2004-09-03" }, "entity_type": "gene", "entity_name": "DCHS1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "24056717" ], "evidence": [ "Other", "Expert Review Green" ], "phenotypes": [ "Van Maldergem syndrome 1, OMIM:601390" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:2073", "gene_name": "tripeptidyl peptidase 1", "omim_gene": [ "607998" ], "alias_name": [ "TPP I" ], "gene_symbol": "TPP1", "hgnc_symbol": "TPP1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:6634000-6640692", "ensembl_id": "ENSG00000166340" } }, "GRch38": { "90": { "location": "11:6612763-6619461", "ensembl_id": "ENSG00000166340" } } }, "hgnc_date_symbol_changed": "2004-12-10" }, "entity_type": "gene", "entity_name": "TPP1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "Radboud University Medical Center, Nijmegen" ], "phenotypes": [ "Ceroid lipofuscinosis, neuronal, 2, 204500", "NEURONAL CEROID LIPOFUSCINOSIS TYPE 2 (CLN2)" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "OST", "KIAA0115", "OST48", "WBP1", "GATD6" ], "biotype": "protein_coding", "hgnc_id": "HGNC:2728", "gene_name": "dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit", "omim_gene": [ "602202" ], "alias_name": [ "oligosaccharyltransferase subunit 48", "advanced glycation end-product receptor 1" ], "gene_symbol": "DDOST", "hgnc_symbol": "DDOST", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "1:20978270-20988000", "ensembl_id": "ENSG00000244038" } }, "GRch38": { "90": { "location": "1:20651767-20661544", "ensembl_id": "ENSG00000244038" } } }, "hgnc_date_symbol_changed": "1997-12-23" }, "entity_type": "gene", "entity_name": "DDOST", "confidence_level": "2", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "22305527" ], "evidence": [ "Expert Review Amber", "Victorian Clinical Genetics Services" ], "phenotypes": [ "CONGENITAL DISORDER OF GLYCOSYLATION, TYPE IR", "CDG1R" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "L-SOX5", "MGC35153" ], "biotype": "protein_coding", "hgnc_id": "HGNC:11201", "gene_name": "SRY-box 5", "omim_gene": [ "604975" ], "alias_name": null, "gene_symbol": "SOX5", "hgnc_symbol": "SOX5", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "12:23682440-24103966", "ensembl_id": "ENSG00000134532" } }, "GRch38": { "90": { "location": "12:23529500-23951032", "ensembl_id": "ENSG00000134532" } } }, "hgnc_date_symbol_changed": "1997-07-07" }, "entity_type": "gene", "entity_name": "SOX5", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "22290657" ], "evidence": [ "Victorian Clinical Genetics Services", "Expert Review Green" ], "phenotypes": [ "12P12.5 INTRAGENIC DELETIONS ASSOCIATED WITH INTELLECTUAL DISABILITY" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "16E1BP" ], "biotype": "protein_coding", "hgnc_id": "HGNC:12307", "gene_name": "thyroid hormone receptor interactor 13", "omim_gene": [ "604507" ], "alias_name": [ "thyroid receptor interacting protein 13" ], "gene_symbol": "TRIP13", "hgnc_symbol": "TRIP13", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "5:892758-919472", "ensembl_id": "ENSG00000071539" } }, "GRch38": { "90": { "location": "5:892643-919357", "ensembl_id": "ENSG00000071539" } } }, "hgnc_date_symbol_changed": "2000-01-04" }, "entity_type": "gene", "entity_name": "TRIP13", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "28553959" ], "evidence": [ "Victorian Clinical Genetics Services", "Literature" ], "phenotypes": [ "Mosaic variegated aneuploidy syndrome 3\t617598" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "watchlist" ], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "LH1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9081", "gene_name": "procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "omim_gene": [ "153454" ], "alias_name": [ "lysyl hydroxlase 1" ], "gene_symbol": "PLOD1", "hgnc_symbol": "PLOD1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "1:11994262-12035595", "ensembl_id": "ENSG00000083444" } }, "GRch38": { "90": { "location": "1:11934205-11975538", "ensembl_id": "ENSG00000083444" } } }, "hgnc_date_symbol_changed": "2004-12-14" }, "entity_type": "gene", "entity_name": "PLOD1", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Red", "BRIDGE study SPEED NEURO Tier1 Gene" ], "phenotypes": [ "Gene2Phenotype confirmed gene with ID HPO" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "HLP", "DDX13", "SKI2W", "170A", "SKIV2L1" ], "biotype": "protein_coding", "hgnc_id": "HGNC:10898", "gene_name": "Ski2 like RNA helicase", "omim_gene": [ "600478" ], "alias_name": null, "gene_symbol": "SKIV2L", "hgnc_symbol": "SKIV2L", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "6:31926857-31937532", "ensembl_id": "ENSG00000204351" } }, "GRch38": { "90": { "location": "6:31959080-31969755", "ensembl_id": "ENSG00000204351" } } }, "hgnc_date_symbol_changed": "1995-07-06" }, "entity_type": "gene", "entity_name": "SKIV2L", "confidence_level": "1", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [ "25529582", "29334452" ], "evidence": [ "Expert Review Red", "BRIDGE study SPEED NEURO Tier1 Gene" ], "phenotypes": [ "Trichohepatoenteric syndrome 2, 614602" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "new-gene-name" ], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "FLJ12541" ], "biotype": "protein_coding", "hgnc_id": "HGNC:30650", "gene_name": "stimulated by retinoic acid 6", "omim_gene": [ "610745" ], "alias_name": [ "retinol binding protein 4 receptor" ], "gene_symbol": "STRA6", "hgnc_symbol": "STRA6", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "15:74471807-74504608", "ensembl_id": "ENSG00000137868" } }, "GRch38": { "90": { "location": "15:74179466-74212267", "ensembl_id": "ENSG00000137868" } } }, "hgnc_date_symbol_changed": "2004-12-20" }, "entity_type": "gene", "entity_name": "STRA6", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Victorian Clinical Genetics Services", "Expert Review Green", "Radboud University Medical Center, Nijmegen" ], "phenotypes": [ "Microphthalmia, syndromic 9, 601186Microphthalmia, isolated, with coloboma 8, 601186", "MICROPHTHALMIA SYNDROMIC TYPE 9 (MCOPS9)" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 285, "hash_id": "558aa423bb5a16630e15b63c", "name": "Intellectual disability - microarray and sequencing", "disease_group": "Neurology and neurodevelopmental disorders", "disease_sub_group": "Neurodevelopmental disorders", "status": "public", "version": "5.544", "version_created": "2024-04-24T16:43:51.688324Z", "relevant_disorders": [ "Coarse facial features including Coffin-Siris-like disorders", "ID", "Moderate", "severe or profound intellectual disability", "Schizophrenia plus additional features", "Intellectual disability - microarray", "fragile X and sequencing", "Intellectual disability", "R29" ], "stats": { "number_of_genes": 2685, "number_of_strs": 12, "number_of_regions": 62 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA0719", "Tom70" ], "biotype": "protein_coding", "hgnc_id": "HGNC:11985", "gene_name": "translocase of outer mitochondrial membrane 70", "omim_gene": [ "606081" ], "alias_name": null, "gene_symbol": "TOMM70", "hgnc_symbol": "TOMM70", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "3:100082275-100120242", "ensembl_id": "ENSG00000154174" } }, "GRch38": { "90": { "location": "3:100363431-100401398", "ensembl_id": "ENSG00000154174" } } }, "hgnc_date_symbol_changed": "2016-02-26" }, "entity_type": "gene", "entity_name": "TOMM70", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "31907385", "32356556" ], "evidence": [ "Expert Review Amber", "Literature" ], "phenotypes": [ "Severe anaemia, lactic acidosis", "developmental delay", "white matter abnormalities" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 112, "hash_id": "55928cf522c1fc4f7d26e960", "name": "Mitochondrial disorders", "disease_group": "Metabolic disorders", "disease_sub_group": "Mitochondrial", "status": "public", "version": "4.169", "version_created": "2024-04-24T16:20:06.131745Z", "relevant_disorders": [ "Lactic acidosis", "All recognised syndromes and those with suggestive features" ], "stats": { "number_of_genes": 487, "number_of_strs": 2, "number_of_regions": 1 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": [] }, { "gene_data": { "alias": [ "FLJ10375", "MGC47890", "SCAR10" ], "biotype": "protein_coding", "hgnc_id": "HGNC:25519", "gene_name": "anoctamin 10", "omim_gene": [ "613726" ], "alias_name": null, "gene_symbol": "ANO10", "hgnc_symbol": "ANO10", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "3:43396351-43733086", "ensembl_id": "ENSG00000160746" } }, "GRch38": { "90": { "location": "3:43354859-43691594", "ensembl_id": "ENSG00000160746" } } }, "hgnc_date_symbol_changed": "2008-08-28" }, "entity_type": "gene", "entity_name": "ANO10", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "London North GLH", "NHS GMS", "Wessex and West Midlands GLH", "Expert Review Green", "Hereditary ataxia v1.148" ], "phenotypes": [ "Spinocerebellar ataxia autosomal recessive type 10, 613728", "Spinocerebellar ataxia, autosomal recessive 10" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 466, "hash_id": null, "name": "Hereditary ataxia with onset in adulthood", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "4.34", "version_created": "2024-04-18T21:35:40.968399Z", "relevant_disorders": [ "Hereditary ataxia - adult onset", "R54" ], "stats": { "number_of_genes": 248, "number_of_strs": 15, "number_of_regions": 4 }, "types": [ { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:2073", "gene_name": "tripeptidyl peptidase 1", "omim_gene": [ "607998" ], "alias_name": [ "TPP I" ], "gene_symbol": "TPP1", "hgnc_symbol": "TPP1", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "11:6634000-6640692", "ensembl_id": "ENSG00000166340" } }, "GRch38": { "90": { "location": "11:6612763-6619461", "ensembl_id": "ENSG00000166340" } } }, "hgnc_date_symbol_changed": "2004-12-10" }, "entity_type": "gene", "entity_name": "TPP1", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "NHS GMS" ], "phenotypes": [ "Eye Disorders", "Ceroid lipofuscinosis, neuronal, 2, 204500" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 307, "hash_id": "56e0238b22c1fc09c97a6e46", "name": "Retinal disorders", "disease_group": "Ophthalmological disorders", "disease_sub_group": "Posterior segment abnormalities", "status": "public", "version": "4.90", "version_created": "2024-04-24T16:37:26.169254Z", "relevant_disorders": [ "Posterior segment abnormalities", "Cone Dysfunction Syndrome", "Developmental macular and foveal dystrophy", "Inherited macular dystrophy", "Leber Congenital Amaurosis Early-Onset Severe Retinal Dystrophy", "Leber Congenital Amaurosis / Early-Onset Severe Retinal Dystrophy", "Leber Congenital Amaurosis or Early-Onset Severe Retinal Dystrophy", "Rod Dysfunction Syndrome", "Rod-cone dystrophy", "Familial exudative vitreoretinopathy", "Familial exudative retinopathy", "Sorsby retinal dystrophy", "Doyne retinal dystrophy", "R32" ], "stats": { "number_of_genes": 422, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "PNR", "rd7", "RP37" ], "biotype": null, "hgnc_id": "HGNC:7974", "gene_name": "nuclear receptor subfamily 2 group E member 3", "omim_gene": [ "604485" ], "alias_name": null, "gene_symbol": "NR2E3", "hgnc_symbol": "NR2E3", "hgnc_release": "2017-11-03T00:00:00", "ensembl_genes": { "GRch37": { "82": { "location": "15:72084977-72110600", "ensembl_id": "ENSG00000031544" } }, "GRch38": { "90": { "location": "15:71792638-71818259", "ensembl_id": "ENSG00000278570" } } }, "hgnc_date_symbol_changed": "1999-09-16" }, "entity_type": "gene", "entity_name": "NR2E3", "confidence_level": "3", "penetrance": "Complete", "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green" ], "phenotypes": [ "Enhanced S - cone syndrome (AR)", "Retinitis pigmentosa 37 (AD and AR)", "Eye Disorders", "Retinitis pigmentosa", "Retinitis Pigmentosa, Recessive", "Enhanced S-cone syndrome, 268100" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 307, "hash_id": "56e0238b22c1fc09c97a6e46", "name": "Retinal disorders", "disease_group": "Ophthalmological disorders", "disease_sub_group": "Posterior segment abnormalities", "status": "public", "version": "4.90", "version_created": "2024-04-24T16:37:26.169254Z", "relevant_disorders": [ "Posterior segment abnormalities", "Cone Dysfunction Syndrome", "Developmental macular and foveal dystrophy", "Inherited macular dystrophy", "Leber Congenital Amaurosis Early-Onset Severe Retinal Dystrophy", "Leber Congenital Amaurosis / Early-Onset Severe Retinal Dystrophy", "Leber Congenital Amaurosis or Early-Onset Severe Retinal Dystrophy", "Rod Dysfunction Syndrome", "Rod-cone dystrophy", "Familial exudative vitreoretinopathy", "Familial exudative retinopathy", "Sorsby retinal dystrophy", "Doyne retinal dystrophy", "R32" ], "stats": { "number_of_genes": 422, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Rare Disease 100K", "slug": "rare-disease-100k", "description": "Rare Disease 100K" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:14584", "gene_name": "VPS16, CORVET/HOPS core subunit", "omim_gene": [ "608550" ], "alias_name": null, "gene_symbol": "VPS16", "hgnc_symbol": "VPS16", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "20:2821349-2847378", "ensembl_id": "ENSG00000215305" } }, "GRch38": { "90": { "location": "20:2840703-2866732", "ensembl_id": "ENSG00000215305" } } }, "hgnc_date_symbol_changed": "2009-07-07" }, "entity_type": "gene", "entity_name": "VPS16", "confidence_level": "3", "penetrance": "Incomplete", "mode_of_pathogenicity": null, "publications": [ "27174565", "32808683", "33305852", "33482438", "33595841", "33998058" ], "evidence": [ "Expert Review Green", "NHS GMS" ], "phenotypes": [ "Dystonia 30, OMIM:619291", "Dystonia Associated with Lysosomal Abnormalities" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted", "tags": [], "panel": { "id": 540, "hash_id": null, "name": "Adult onset dystonia, chorea or related movement disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.18", "version_created": "2023-10-26T10:55:08.890471Z", "relevant_disorders": [ "Adult onset movement disorder", "R56" ], "stats": { "number_of_genes": 206, "number_of_strs": 11, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:2860", "gene_name": "7-dehydrocholesterol reductase", "omim_gene": [ "602858" ], "alias_name": null, "gene_symbol": "DHCR7", "hgnc_symbol": "DHCR7", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "11:71139239-71163914", "ensembl_id": "ENSG00000172893" } }, "GRch38": { "90": { "location": "11:71428193-71452868", "ensembl_id": "ENSG00000172893" } } }, "hgnc_date_symbol_changed": "1998-04-27" }, "entity_type": "gene", "entity_name": "DHCR7", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "9634533" ], "evidence": [ "Expert Review Green", "UKGTN" ], "phenotypes": [ "Smith-Lemli-Opitz syndrome 270400" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 726, "hash_id": null, "name": "Skeletal ciliopathies", "disease_group": "Ciliopathies", "disease_sub_group": "Congenital malformations caused by ciliopathies", "status": "public", "version": "3.22", "version_created": "2024-04-23T11:43:37.991437Z", "relevant_disorders": [], "stats": { "number_of_genes": 69, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [], "biotype": "protein_coding", "hgnc_id": "HGNC:29162", "gene_name": "family with sequence similarity 149 member B1", "omim_gene": null, "alias_name": null, "gene_symbol": "FAM149B1", "hgnc_symbol": "FAM149B1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "10:74927924-75004262", "ensembl_id": "ENSG00000138286" } }, "GRch38": { "90": { "location": "10:73168166-73244504", "ensembl_id": "ENSG00000138286" } } }, "hgnc_date_symbol_changed": "2007-11-14" }, "entity_type": "gene", "entity_name": "FAM149B1", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": null, "publications": [ "30905400" ], "evidence": [ "Expert Review Amber", "Literature" ], "phenotypes": [ "Joubert syndrome", "oral-facial-digital syndrome", "OFD VI" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [ "gene-checked" ], "panel": { "id": 726, "hash_id": null, "name": "Skeletal ciliopathies", "disease_group": "Ciliopathies", "disease_sub_group": "Congenital malformations caused by ciliopathies", "status": "public", "version": "3.22", "version_created": "2024-04-23T11:43:37.991437Z", "relevant_disorders": [], "stats": { "number_of_genes": 69, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null }, { "gene_data": { "alias": [ "KIAA0733" ], "biotype": "protein_coding", "hgnc_id": "HGNC:17075", "gene_name": "TGF-beta activated kinase 1/MAP3K7 binding protein 2", "omim_gene": [ "605101" ], "alias_name": null, "gene_symbol": "TAB2", "hgnc_symbol": "TAB2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "6:149539777-149732749", "ensembl_id": "ENSG00000055208" } }, "GRch38": { "90": { "location": "6:149218641-149411613", "ensembl_id": "ENSG00000055208" } } }, "hgnc_date_symbol_changed": "2010-02-05" }, "entity_type": "gene", "entity_name": "TAB2", "confidence_level": "2", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "28464518", "29700987", "32183715", "34456334", "34990405", "34741306", "36000780", "37153890" ], "evidence": [ "Expert Review Amber", "NHS GMS", "London South GLH" ], "phenotypes": [ "Congenital heart defects, nonsyndromic, 2, OMIM:614980" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [ "Q3_23_promote_green" ], "panel": { "id": 749, "hash_id": null, "name": "Paediatric or syndromic cardiomyopathy", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.47", "version_created": "2024-04-23T13:12:59.575255Z", "relevant_disorders": [ "Cardiomyopathies - including childhood onset", "R135" ], "stats": { "number_of_genes": 225, "number_of_strs": 0, "number_of_regions": 1 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "Component Of Super Panel", "slug": "component-of-super-panel", "description": "This panel is a component of a Super Panel" } ] }, "transcript": null }, { "gene_data": { "alias": [ "Nav1.8", "hPN3", "SNS", "PN3" ], "biotype": "protein_coding", "hgnc_id": "HGNC:10582", "gene_name": "sodium voltage-gated channel alpha subunit 10", "omim_gene": [ "604427" ], "alias_name": null, "gene_symbol": "SCN10A", "hgnc_symbol": "SCN10A", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "3:38738293-38835501", "ensembl_id": "ENSG00000185313" } }, "GRch38": { "90": { "location": "3:38696802-38794010", "ensembl_id": "ENSG00000185313" } } }, "hgnc_date_symbol_changed": "1996-04-12" }, "entity_type": "gene", "entity_name": "SCN10A", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "London North GLH", "NHS GMS", "NHS GMS", "London North GLH" ], "phenotypes": [ "Episodic pain syndrome, familial, 2, 615551" ], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 846, "hash_id": null, "name": "Hereditary neuropathy or pain disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.94", "version_created": "2024-04-18T18:10:25.032757Z", "relevant_disorders": [ "Hereditary neuropathy NOT PMP22 copy number", "Hereditary neuropathy or pain disorder - NOT PMP22 copy number", "R78" ], "stats": { "number_of_genes": 312, "number_of_strs": 1, "number_of_regions": 2 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "SAP-3" ], "biotype": "protein_coding", "hgnc_id": "HGNC:4367", "gene_name": "GM2 ganglioside activator", "omim_gene": [ "613109" ], "alias_name": [ "cerebroside sulfate activator protein", "sphingolipid activator protein 3" ], "gene_symbol": "GM2A", "hgnc_symbol": "GM2A", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "5:150591711-150650001", "ensembl_id": "ENSG00000196743" } }, "GRch38": { "90": { "location": "5:151212150-151270440", "ensembl_id": "ENSG00000196743" } } }, "hgnc_date_symbol_changed": "1986-01-01" }, "entity_type": "gene", "entity_name": "GM2A", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "Expert Review Green", "London North GLH" ], "phenotypes": [ "GM2-gangliosidosis, AB variant, 272750" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 847, "hash_id": null, "name": "Childhood onset dystonia, chorea or related movement disorder", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "3.77", "version_created": "2024-04-23T13:37:47.314382Z", "relevant_disorders": [ "Childhood onset dystonia or chorea or related movement disorder", "R57" ], "stats": { "number_of_genes": 976, "number_of_strs": 5, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." }, { "name": "GMS Rare Disease Virtual", "slug": "gms-rare-disease-virtual", "description": "This is a panel for the Genomic Medicine Service for an exome/genome/panel based test that requires a virtual gene panel for rare disease in the Test Directory." } ] }, "transcript": null }, { "gene_data": { "alias": [ "ACONM" ], "biotype": "protein_coding", "hgnc_id": "HGNC:118", "gene_name": "aconitase 2", "omim_gene": [ "100850" ], "alias_name": [ "aconitate hydratase, mitochondrial", "mitochondrial aconitase" ], "gene_symbol": "ACO2", "hgnc_symbol": "ACO2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "22:41865129-41924993", "ensembl_id": "ENSG00000100412" } }, "GRch38": { "90": { "location": "22:41469125-41528989", "ensembl_id": "ENSG00000100412" } } }, "hgnc_date_symbol_changed": "1986-01-01" }, "entity_type": "gene", "entity_name": "ACO2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30847515", "34056600" ], "evidence": [ "Next Generation Children Project", "Expert Review Green", "Expert list" ], "phenotypes": [ "Infantile cerebellar-retinal degeneration, 614559" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 921, "hash_id": null, "name": "Severe Paediatric Disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.184", "version_created": "2024-04-09T15:06:23.215649Z", "relevant_disorders": [], "stats": { "number_of_genes": 2691, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "API", "ALPHA-2-PI", "A2AP", "AAP" ], "biotype": "protein_coding", "hgnc_id": "HGNC:9075", "gene_name": "serpin family F member 2", "omim_gene": [ "613168" ], "alias_name": [ "alpha-2-plasmin inhibitor", "alpha-2-antiplasmin" ], "gene_symbol": "SERPINF2", "hgnc_symbol": "SERPINF2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "17:1646130-1658562", "ensembl_id": "ENSG00000167711" } }, "GRch38": { "90": { "location": "17:1742836-1755268", "ensembl_id": "ENSG00000167711" } } }, "hgnc_date_symbol_changed": "1989-04-14" }, "entity_type": "gene", "entity_name": "SERPINF2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30847515" ], "evidence": [ "Next Generation Children Project", "Expert Review Green", "Expert list" ], "phenotypes": [ "Alpha-2-plasmin inhibitor deficiency, 262850" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 921, "hash_id": null, "name": "Severe Paediatric Disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.184", "version_created": "2024-04-09T15:06:23.215649Z", "relevant_disorders": [], "stats": { "number_of_genes": 2691, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "NET32", "Erlin-2" ], "biotype": "protein_coding", "hgnc_id": "HGNC:1356", "gene_name": "ER lipid raft associated 2", "omim_gene": [ "611605" ], "alias_name": null, "gene_symbol": "ERLIN2", "hgnc_symbol": "ERLIN2", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "8:37594117-37616619", "ensembl_id": "ENSG00000147475" } }, "GRch38": { "90": { "location": "8:37736599-37759101", "ensembl_id": "ENSG00000147475" } } }, "hgnc_date_symbol_changed": "2007-01-26" }, "entity_type": "gene", "entity_name": "ERLIN2", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30847515" ], "evidence": [ "Next Generation Children Project", "Expert Review Green", "Expert list" ], "phenotypes": [ "Spastic paraplegia 18, autosomal recessive, 611225" ], "mode_of_inheritance": "BIALLELIC, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 921, "hash_id": null, "name": "Severe Paediatric Disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.184", "version_created": "2024-04-09T15:06:23.215649Z", "relevant_disorders": [], "stats": { "number_of_genes": 2691, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "trnM" ], "biotype": "Mt_tRNA", "hgnc_id": "HGNC:7492", "gene_name": "mitochondrially encoded tRNA methionine", "omim_gene": [ "590065" ], "alias_name": null, "gene_symbol": "MT-TM", "hgnc_symbol": "MT-TM", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "MT:4402-4469", "ensembl_id": "ENSG00000210112" } }, "GRch38": { "90": { "location": "MT:4402-4469", "ensembl_id": "ENSG00000210112" } } }, "hgnc_date_symbol_changed": "2005-02-16" }, "entity_type": "gene", "entity_name": "MT-TM", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30847515" ], "evidence": [ "Next Generation Children Project", "Expert Review Green", "Expert list" ], "phenotypes": [ "MYOPATHY, MITOCHONDRIAL" ], "mode_of_inheritance": "MITOCHONDRIAL", "tags": [], "panel": { "id": 921, "hash_id": null, "name": "Severe Paediatric Disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.184", "version_created": "2024-04-09T15:06:23.215649Z", "relevant_disorders": [], "stats": { "number_of_genes": 2691, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "RPX", "ANF" ], "biotype": "protein_coding", "hgnc_id": "HGNC:4877", "gene_name": "HESX homeobox 1", "omim_gene": [ "601802" ], "alias_name": null, "gene_symbol": "HESX1", "hgnc_symbol": "HESX1", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "3:57231944-57260549", "ensembl_id": "ENSG00000163666" } }, "GRch38": { "90": { "location": "3:57197843-57226521", "ensembl_id": "ENSG00000163666" } } }, "hgnc_date_symbol_changed": "1998-11-19" }, "entity_type": "gene", "entity_name": "HESX1", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [ "30847515" ], "evidence": [ "Next Generation Children Project", "Expert Review Green", "Expert list" ], "phenotypes": [ "Pituitary hormone deficiency, combined, 5, 182230", "Growth hormone deficiency with pituitary anomalies, 182230", "Septooptic dysplasia, 182230" ], "mode_of_inheritance": "BOTH monoallelic and biallelic, autosomal or pseudoautosomal", "tags": [], "panel": { "id": 921, "hash_id": null, "name": "Severe Paediatric Disorders", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.184", "version_created": "2024-04-09T15:06:23.215649Z", "relevant_disorders": [], "stats": { "number_of_genes": 2691, "number_of_strs": 1, "number_of_regions": 0 }, "types": [ { "name": "Research", "slug": "research", "description": "This is a gene panel used for research." } ] }, "transcript": null }, { "gene_data": { "alias": [ "NE", "HNE", "HLE" ], "biotype": "protein_coding", "hgnc_id": "HGNC:3309", "gene_name": "elastase, neutrophil expressed", "omim_gene": [ "130130" ], "alias_name": [ "neutrophil elastase", "leukocyte elastase", "medullasin" ], "gene_symbol": "ELANE", "hgnc_symbol": "ELANE", "hgnc_release": "2017-11-03", "ensembl_genes": { "GRch37": { "82": { "location": "19:851014-856242", "ensembl_id": "ENSG00000197561" } }, "GRch38": { "90": { "location": "19:851014-856247", "ensembl_id": "ENSG00000197561" } } }, "hgnc_date_symbol_changed": "2009-05-05" }, "entity_type": "gene", "entity_name": "ELANE", "confidence_level": "3", "penetrance": null, "mode_of_pathogenicity": "", "publications": [], "evidence": [ "NHS GMS", "Expert Review Green" ], "phenotypes": [], "mode_of_inheritance": "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown", "tags": [], "panel": { "id": 1372, "hash_id": null, "name": "Neutropaenia consistent with ELANE mutations", "disease_group": "", "disease_sub_group": "", "status": "public", "version": "1.1", "version_created": "2023-09-14T13:43:05.956143Z", "relevant_disorders": [ "R313" ], "stats": { "number_of_genes": 1, "number_of_strs": 0, "number_of_regions": 0 }, "types": [ { "name": "GMS Rare Disease", "slug": "gms-rare-disease", "description": "This panel type is used for GMS panels that are not virtual (i.e. could be a wet lab test)" }, { "name": "GMS signed-off", "slug": "gms-signed-off", "description": "This panel has undergone review by a NHSE GMS disease specialist group and processes to be signed-off for use within the GMS." } ] }, "transcript": null } ] }{ "count": 35330, "next": "