Pulmonary fibrosis familial
Gene: RPA1EnsemblGeneIds (GRCh38): ENSG00000132383
EnsemblGeneIds (GRCh37): ENSG00000132383
OMIM: 179835, Gene2Phenotype
RPA1 is in 2 panels
2 reviews
Arina Puzriakova (Genomics England Curator)
Comment on list classification: Heterogenous phenotypes have been recorded and only two individuals presented with pulmonary fibrosis (associated with post-transplant complications in one). At present this is sufficient to rate as amber but this may be reviewed if further evidence emerges.Created: 6 Apr 2022, 10:59 a.m. | Last Modified: 6 Apr 2022, 11 a.m.
Panel Version: 0.8
Sharma et al., 2022 (PMID: 34767620) report four unrelated individuals with three distinct heterozygous GOF variants in the RPA1 gene. Clinical presentation was variable but mainly affecting the hematopoietic or pulmonary systems. Patient 1 presented with pancytopenia, hypoplastic bone marrow, and the classic DKC triad; Patient 2 developed myelodysplastic syndrome (MDS) with excess blasts, as well as mildly restrictive lung disease which progressed to pulmonary fibrosis (PF) following several HSCT-related complications; Patient 3 had adult-onset idiopathic PF with a positive family history (although segregation analysis was not possible); Patient 4 presented at birth with T- and B-cell lymphopenia and hypogammaglobulinemia. All probands demonstrated short telomere lengths.Created: 6 Apr 2022, 10:45 a.m. | Last Modified: 6 Apr 2022, 10:45 a.m.
Panel Version: 1.58
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Pulmonary fibrosis and/or bone marrow failure, telomere-related, 6, OMIM:619767
Publications
Dmitrijs Rots (Children's Clinical University Hospital)
4 cases with gain of function mutations with "including bone marrow failure, myelodysplastic syndrome, T- and B-cell lymphopenia, pulmonary fibrosis, or skin manifestations." described in
https://doi.org/10.1182/blood.2021011980
Sources: LiteratureCreated: 12 Nov 2021, 7:21 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
bone marrow failure; T- and B-cell lymphopenia; pulmonary fibrosis; skin manifestations.
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Expert Review Amber
- Literature
- Phenotypes
-
- Pulmonary fibrosis and/or bone marrow failure, telomere-related, 6, OMIM:619767
- OMIM
- 179835
- Clinvar variants
- Variants in RPA1
- Penetrance
- Incomplete
- Publications
- Mode of Pathogenicity
- Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Arina Puzriakova (Genomics England Curator)Gene: rpa1 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity
Arina Puzriakova (Genomics England Curator)gene: RPA1 was added gene: RPA1 was added to Pulmonary fibrosis familial. Sources: Literature Mode of inheritance for gene: RPA1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: RPA1 were set to 34767620 Phenotypes for gene: RPA1 were set to Pulmonary fibrosis and/or bone marrow failure, telomere-related, 6, OMIM:619767 Penetrance for gene: RPA1 were set to Incomplete Mode of pathogenicity for gene: RPA1 was set to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments