Mosaic brain disorders - deep sequencing

Gene: RPS6

Red List (low evidence)

RPS6 (ribosomal protein S6)
EnsemblGeneIds (GRCh38): ENSG00000137154
EnsemblGeneIds (GRCh37): ENSG00000137154
OMIM: 180460, Gene2Phenotype
RPS6 is in 0 panels

4 reviews

Sarah Leigh (Genomics England Curator)

The rating of this gene has been updated to Red and the mode of inheritance set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown following NHS Genomic Medicine Service approval.
Created: 11 Oct 2023, 8:53 a.m. | Last Modified: 11 Oct 2023, 8:53 a.m.
Panel Version: 0.133

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Tom Cullup (Great Ormond Street Hospital)

Red List (low evidence)

Either rate red or remove please
Created: 31 May 2023, 9:33 a.m. | Last Modified: 31 May 2023, 9:33 a.m.
Panel Version: 0.100

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Hemimegalencephaly with intractable epilepsy

Publications

Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

Arina Puzriakova (Genomics England Curator)

Comment on list classification: Only a single patient has been reported to date who harboured a somatic mosaic missense VUS (c.695G > A; p.R232H) in the RPS6 gene. A concurrent somatic mosaic missense variant (c.6644C > T; p.S2215F) was identified in the MTOR gene. Authors speculated that it was this combination of variants affecting the mTOR pathway that contributed to the patients phenotype as demonstrated by a more severe phenotype in double mutant rats.

This gene is not associated with any phenotypes in OMIM, G2P or other PanelApp panels.

Recommending Red rating, awaiting further cases that would corroborate this association.
Created: 22 Dec 2022, 12:12 p.m. | Last Modified: 22 Dec 2022, 12:12 p.m.
Panel Version: 0.62

Eleanor Williams (Genomics England Curator)

Red List (low evidence)

The rating of this gene has been updated to Red and the mode of inheritance set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown following NHS Genomic Medicine Service approval.
Created: 1 Feb 2023, 5:26 p.m. | Last Modified: 1 Feb 2023, 5:38 p.m.
Panel Version: 0.93
Review submitted on behalf of Dr Lara Menzies, Dr Wendy Jones, Dr Amy McTague. Mode of inheritance: mosaic. Publications: Pelorusso et al 2019 Human Molecular Genetics. Mechanism: no information provided. Penetrance: no information provided.
Created: 21 Dec 2022, 12:16 p.m. | Last Modified: 21 Dec 2022, 12:16 p.m.
Panel Version: 0.2

Phenotypes
Hemimegalencephaly with intractable epilepsy

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • NHS GMS
  • Expert Review Red
  • Expert list
Phenotypes
  • Hemimegalencephaly, severe intellectual disability, intractable seizures and hypochromic skin patches
Tags
watchlist somatic
OMIM
180460
Clinvar variants
Variants in RPS6
Penetrance
None
Publications
Mode of Pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Panels with this gene

History Filter Activity

11 Oct 2023, Gel status: 1

Added New Source

Sarah Leigh (Genomics England Curator)

Source NHS GMS was added to RPS6.

22 Dec 2022, Gel status: 1

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag watchlist tag was added to gene: RPS6.

22 Dec 2022, Gel status: 1

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Gene: rps6 has been classified as Red List (Low Evidence).

22 Dec 2022, Gel status: 1

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag somatic tag was added to gene: RPS6.

22 Dec 2022, Gel status: 1

Set mode of inheritance

Arina Puzriakova (Genomics England Curator)

Mode of inheritance for gene: RPS6 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

22 Dec 2022, Gel status: 1

Set Phenotypes

Arina Puzriakova (Genomics England Curator)

Phenotypes for gene: RPS6 were changed from to Hemimegalencephaly, severe intellectual disability, intractable seizures and hypochromic skin patches

22 Dec 2022, Gel status: 1

Set mode of pathogenicity

Arina Puzriakova (Genomics England Curator)

Mode of pathogenicity for gene: RPS6 was changed from to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

22 Dec 2022, Gel status: 1

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: RPS6 were set to

21 Dec 2022, Gel status: 1

Created, Added New Source, Set mode of inheritance

Eleanor Williams (Genomics England Curator)

gene: RPS6 was added gene: RPS6 was added to Mosaic brain disorders. Sources: Expert list Mode of inheritance for gene: RPS6 was set to