- Panels
- Newborns main panel
- IRF2BP2
- AAAS 1
- ABCB11 1
- ABCB4 1
- ABCC6 1
- ABCC8 2
- ABCD1 1
- ABCD4 1
- ACAD9 1
- ACADM 1
- ACADVL 2
- ACAT1 1
- ACOX2 1
- ADA 2
- ADA2 1
- ADAMTS13 1
- AGL 1
- AGPAT2 1
- AGRN 2
- AGXT 1
- AICDA 1
- AIRE 1
- AK2 1
- AKR1D1 1
- ALDH7A1 1
- ALDOB 1
- ALG14 2
- ALG2 2
- ALPK1 1
- ALPL 2
- AMACR 1
- AMH 1
- AMHR2 1
- AMN 1
- ANOS1 1
- AP3B1 1
- AP3D1 1
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- PHEX 2
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- SGPL1 1
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- SI 1
- SKIV2L 2
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- SLC22A5 1
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- SLC2A1 2
- SLC30A10 1
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- SLC39A4 1
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- SLC46A1 1
- SLC4A1 2
- SLC52A2 1
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- SLC7A7 1
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- SMN1 2
- SNX10 1
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- FXN 1
- FXYD2 1
- G6PD 1
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- GALM 1
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- GATA4 1
- GATA6 1
- GBA 2
- GCH1 1
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- GLA 1
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- IER3IP1 1
- IFIH1 1
- IGFALS 1
- IKBKG 2
- IKZF1 1
- IL1RN 1
- IL21 1
- IL21R 1
- IL36RN 1
- INSR 1
- IRF2BP2 1
- JAK1 1
- KCNA1 1
- KCNE1 1
- KCNH2 2
- KCNJ2 1
- KCNJ5 1
- KCNJ8 1
- KCNQ1 2
- KCNQ2 3
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- LAMTOR2 1
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- SLC16A1 1
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- SLC26A3 2
- SLC26A4 1
- SLC2A2 1
- SLC35A2 1
- SLC35C1 1
- SLC39A14 1
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- SLC40A1 1
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Newborns main panel
Gene: IRF2BP2 Amber List (moderate evidence)EnsemblGeneIds (GRCh38): ENSG00000168264
EnsemblGeneIds (GRCh37): ENSG00000168264
OMIM: 615332, Gene2Phenotype
IRF2BP2 is in 2 panels
1 review
Mafalda Gomes (Genomics England Curator)
The mechanism of pathogenicity is gain-of-function (GOF).Created: 1 Jun 2023, 2:40 p.m. | Last Modified: 1 Jun 2023, 2:40 p.m.
Panel Version: 0.137
PMID: 27016798 - 1 familyCreated: 1 Jun 2023, 12:22 p.m. | Last Modified: 1 Jun 2023, 12:22 p.m.
Panel Version: 0.134
Limited gene-disease association according to ClinGen (march 2021). One missense variant (Ser551Asn) has been reported in one proband in one publication (PMID: 27016798), segregating in two additional affected family members. An additional patient with the IRF2BP2 c.1180A>C; p.Thr394Pro variant has been reported in an individual affected with CIVD in an abstract for the American college of allergy, asthma & immunology 2018 annual scientific meeting (Joseph 2018; https://doi.org/10.1016/j.anai.2018.09.308) As for MOP I think this is GOF not LOF as in the proband in the first publication they saw higher expression of IRF2BP2 than WT? Also I would say not to go through LOF prioritisation since no truncating variants anyway? -> DB: Changed to GOF. But note that this is a category 3 gene so will not be on the list. Need at least 3 families and based on what you found there are only 2Created: 17 May 2023, 1:42 p.m. | Last Modified: 17 May 2023, 1:42 p.m.
Panel Version: 0.83
Last Modified: 17 May 2023, 1:42 p.m.
Panel version: 0.137
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Amber
- Phenotypes
-
- Common variable immune deficiency 14
- OMIM
- 615332
- Clinvar variants
- Variants in IRF2BP2
- Penetrance
- None
- Mode of Pathogenicity
- Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
- Panels with this gene
History Filter Activity
Set Phenotypes
Mafalda Gomes (Genomics England Curator)Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Amber was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from Red List (low evidence) to Amber List (moderate evidence)
Removed Tag
Mafalda Gomes (Genomics England Curator)Tag GOF was removed from gene: IRF2BP2.
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Red was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from Amber List (moderate evidence) to Red List (low evidence)
Added New Source, Set Phenotypes, Status Update
Mafalda Gomes (Genomics England Curator)Source Expert Review Amber was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from No List (delete) to Amber List (moderate evidence)
Set mode of pathogenicity
Mafalda Gomes (Genomics England Curator)Mode of pathogenicity for gene: IRF2BP2 was changed from to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Added Tag
Mafalda Gomes (Genomics England Curator)Tag GOF tag was added to gene: IRF2BP2.
Created, Added New Source, Set mode of inheritance
Mafalda Gomes (Genomics England Curator)gene: IRF2BP2 was added gene: IRF2BP2 was added to Newborns main panel. Sources: Expert Review Removed Mode of inheritance for gene: IRF2BP2 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown