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Newborns main panel

Gene: IRF2BP2

Amber List (moderate evidence)

IRF2BP2 (interferon regulatory factor 2 binding protein 2)
EnsemblGeneIds (GRCh38): ENSG00000168264
EnsemblGeneIds (GRCh37): ENSG00000168264
OMIM: 615332, Gene2Phenotype
IRF2BP2 is in 2 panels

1 review

Mafalda Gomes (Genomics England Curator)

The mechanism of pathogenicity is gain-of-function (GOF).
Created: 1 Jun 2023, 2:40 p.m. | Last Modified: 1 Jun 2023, 2:40 p.m.
Panel Version: 0.137
PMID: 27016798 - 1 family
Created: 1 Jun 2023, 12:22 p.m. | Last Modified: 1 Jun 2023, 12:22 p.m.
Panel Version: 0.134
Limited gene-disease association according to ClinGen (march 2021). One missense variant (Ser551Asn) has been reported in one proband in one publication (PMID: 27016798), segregating in two additional affected family members. An additional patient with the IRF2BP2 c.1180A>C; p.Thr394Pro variant has been reported in an individual affected with CIVD in an abstract for the American college of allergy, asthma & immunology 2018 annual scientific meeting (Joseph 2018; https://doi.org/10.1016/j.anai.2018.09.308) As for MOP I think this is GOF not LOF as in the proband in the first publication they saw higher expression of IRF2BP2 than WT? Also I would say not to go through LOF prioritisation since no truncating variants anyway? -> DB: Changed to GOF. But note that this is a category 3 gene so will not be on the list. Need at least 3 families and based on what you found there are only 2
Created: 17 May 2023, 1:42 p.m. | Last Modified: 17 May 2023, 1:42 p.m.
Panel Version: 0.83

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
Phenotypes
  • Common variable immune deficiency 14
OMIM
615332
Clinvar variants
Variants in IRF2BP2
Penetrance
None
Mode of Pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Panels with this gene

History Filter Activity

14 Sep 2023, Gel status: 2

Set Phenotypes

Mafalda Gomes (Genomics England Curator)

Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2

5 Jul 2023, Gel status: 2

Added New Source, Set Phenotypes, Status Update

Mafalda Gomes (Genomics England Curator)

Source Expert Review Amber was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from Red List (low evidence) to Amber List (moderate evidence)

31 May 2023, Gel status: 1

Removed Tag

Mafalda Gomes (Genomics England Curator)

Tag GOF was removed from gene: IRF2BP2.

31 May 2023, Gel status: 1

Added New Source, Set Phenotypes, Status Update

Mafalda Gomes (Genomics England Curator)

Source Expert Review Red was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from Amber List (moderate evidence) to Red List (low evidence)

15 May 2023, Gel status: 2

Added New Source, Set Phenotypes, Status Update

Mafalda Gomes (Genomics England Curator)

Source Expert Review Amber was added to IRF2BP2. Added phenotypes Common variable immune deficiency 14 for gene: IRF2BP2 Rating Changed from No List (delete) to Amber List (moderate evidence)

9 Mar 2023, Gel status: 0

Set mode of pathogenicity

Mafalda Gomes (Genomics England Curator)

Mode of pathogenicity for gene: IRF2BP2 was changed from to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments

9 Mar 2023, Gel status: 0

Added Tag

Mafalda Gomes (Genomics England Curator)

Tag GOF tag was added to gene: IRF2BP2.

9 Mar 2023, Gel status: 0

Created, Added New Source, Set mode of inheritance

Mafalda Gomes (Genomics England Curator)

gene: IRF2BP2 was added gene: IRF2BP2 was added to Newborns main panel. Sources: Expert Review Removed Mode of inheritance for gene: IRF2BP2 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown