Cerebral vascular malformations

Gene: CHD4

Amber List (moderate evidence)

CHD4 (chromodomain helicase DNA binding protein 4)
EnsemblGeneIds (GRCh38): ENSG00000111642
EnsemblGeneIds (GRCh37): ENSG00000111642
OMIM: 603277, Gene2Phenotype
CHD4 is in 7 panels

4 reviews

Arina Puzriakova (Genomics England Curator)

I don't know

After NHS Genomic Medicine Service consideration, the rating of this gene has not been changed and remains Amber.

Additional comments from reviewing GLHs: E: I can not find any new published evidence that this gene is associated with Cerebral vascular phenotype since 2020 publication - PMID 31474762 and Helens review in PanelApp. Large cohort study of Moyamoya angiopathy does not identify any individuals with variants in these genes - PMID:37012328. NW: Not enough evidence - limited to one paper only. NEY: moyamoya (the association) seems to be a small part of a developmental disorder phenotype and not a key feature in patients with variants in these genes. They feel more like R27 developmental disorder genes to me. I would keep them as amber. All of the moyamoya diagnoses we have had so far have been in RNF213, which is a pure moyamoya gene.
Created: 6 Dec 2024, 10:20 a.m. | Last Modified: 6 Dec 2024, 10:21 a.m.
Panel Version: 3.18

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Eleanor Williams (Genomics England Curator)

The to_be_confirmed_NHSE tag has been added, as further NHSE review is required before promoting this gene to green.
Created: 30 Jan 2023, 4:01 p.m. | Last Modified: 30 Jan 2023, 4:01 p.m.
Panel Version: 2.68
Updating tags to be Q3_22_expert_review and Q3_22_rating so that gene is included in the next GMS report (Oct 2022)
Created: 6 Oct 2022, 12:56 p.m. | Last Modified: 6 Oct 2022, 12:56 p.m.
Panel Version: 2.60

Sarah Leigh (Genomics England Curator)

I don't know

Comment on phenotypes: Moyamoya disease MONDO:0016820 is not specific to CHD4 variants.
Created: 11 Oct 2022, 11:53 a.m. | Last Modified: 11 Oct 2022, 11:53 a.m.
Panel Version: 2.63
Q2_21_expert_review tag added in order to ask whether the evaluation working group would like to seek specialist opinion on this gene / disease association.
Created: 24 Jun 2021, 3:23 p.m. | Last Modified: 24 Jun 2021, 3:24 p.m.
Panel Version: 2.51
Comment on list classification: After consultation with Helen Brittain (Clinical Fellow, Genomics England), CHD4 has been given an amber rating, as the clinical features of the cases reported may not be relevant to this panel. PMID 31474762 reports a single de novo missense variant in a case of Moyamoya angiopathy, six further CHD4 variants were also identified in this study, however, the pattern of inheritance was uncertain. PMID 27616479 found a CHD4 missense variant in a case who also had Moyama angiopathy and two further de novo missense variants were reported in probands with congenital heart disease who had neurodevelopmental deficit (PMID 28991257).
Created: 28 Apr 2021, 2:49 p.m. | Last Modified: 11 Oct 2022, 1:39 p.m.
Panel Version: 2.63

Zornitza Stark (Australian Genomics)

Red List (low evidence)

5 individuals reported with Moya Moya and ID, but only in one was de novo inheritance confirmed. 4 missense variants and one canonical splice.
Sources: Literature
Created: 9 Dec 2020, 7:09 a.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Moya Moya; Sifrim-Hitz-Weiss syndrome, MIM# 617159

Publications

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • Moyamoya disease MONDO:0016820
  • Sifrim-Hitz-Weiss syndrome OMIM:617159
  • Sifrim-Hitz-Weiss syndrome MONDO:0014946
OMIM
603277
Clinvar variants
Variants in CHD4
Penetrance
None
Publications
Panels with this gene

History Filter Activity

6 Dec 2024, Gel status: 2

Removed Tag, Removed Tag

Arina Puzriakova (Genomics England Curator)

Tag watchlist was removed from gene: CHD4. Tag to_be_confirmed_NHSE was removed from gene: CHD4.

27 Dec 2023, Gel status: 2

Removed Tag, Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q3_22_rating was removed from gene: CHD4. Tag Q3_22_expert_review was removed from gene: CHD4.

30 Jan 2023, Gel status: 2

Added Tag

Eleanor Williams (Genomics England Curator)

Tag to_be_confirmed_NHSE tag was added to gene: CHD4.

11 Oct 2022, Gel status: 2

Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q3_22_expert_review tag was added to gene: CHD4.

11 Oct 2022, Gel status: 2

Removed Tag

Eleanor Williams (Genomics England Curator)

Tag Q3_22_expert_review was removed from gene: CHD4.

11 Oct 2022, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: CHD4 were changed from Moyamoya disease MONDO:0016820; Sifrim-Hitz-Weiss syndrome OMIM:617159; Sifrim-Hitz-Weiss syndrome MONDO:0014946 to Moyamoya disease MONDO:0016820; Sifrim-Hitz-Weiss syndrome OMIM:617159; Sifrim-Hitz-Weiss syndrome MONDO:0014946

6 Oct 2022, Gel status: 2

Removed Tag, Added Tag, Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q2_21_expert_review was removed from gene: CHD4. Tag Q3_22_rating tag was added to gene: CHD4. Tag Q3_22_expert_review tag was added to gene: CHD4.

29 Jun 2021, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: chd4 has been classified as Amber List (Moderate Evidence).

24 Jun 2021, Gel status: 1

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: CHD4 were set to 31474762; 27616479; 27479907

24 Jun 2021, Gel status: 1

Added Tag

Sarah Leigh (Genomics England Curator)

Tag watchlist tag was added to gene: CHD4.

24 Jun 2021, Gel status: 1

Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_21_expert_review tag was added to gene: CHD4.

28 Apr 2021, Gel status: 1

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: CHD4 were changed from Sifrim-Hitz-Weiss syndrome OMIM:617159; Sifrim-Hitz-Weiss syndrome MONDO:0014946 to Moyamoya disease MONDO:0016820; Sifrim-Hitz-Weiss syndrome OMIM:617159; Sifrim-Hitz-Weiss syndrome MONDO:0014946

28 Apr 2021, Gel status: 1

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: chd4 has been classified as Red List (Low Evidence).

28 Apr 2021, Gel status: 0

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: CHD4 were set to 31474762; 27616479

28 Apr 2021, Gel status: 0

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: CHD4 were set to 31474762

28 Apr 2021, Gel status: 0

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: CHD4 were changed from Moya Moya; Sifrim-Hitz-Weiss syndrome, MIM# 617159 to Sifrim-Hitz-Weiss syndrome OMIM:617159; Sifrim-Hitz-Weiss syndrome MONDO:0014946

9 Dec 2020, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Zornitza Stark (Australian Genomics)

gene: CHD4 was added gene: CHD4 was added to Cerebral vascular malformations. Sources: Literature Mode of inheritance for gene: CHD4 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: CHD4 were set to 31474762 Phenotypes for gene: CHD4 were set to Moya Moya; Sifrim-Hitz-Weiss syndrome, MIM# 617159 Review for gene: CHD4 was set to RED