Amelogenesis imperfecta
Gene: SP6EnsemblGeneIds (GRCh38): ENSG00000189120
EnsemblGeneIds (GRCh37): ENSG00000189120
OMIM: 608613, Gene2Phenotype
SP6 is in 1 panel
3 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
The rating of this gene has been updated to Green following NHS Genomic Medicine Service approval.Created: 1 Feb 2023, 5:04 p.m. | Last Modified: 1 Feb 2023, 5:04 p.m.
Panel Version: 2.22
Zornitza Stark (Australian Genomics)
Additional case reported. Consider green rating given mouse and rat model.Created: 13 Aug 2021, 6:08 a.m. | Last Modified: 13 Aug 2021, 6:08 a.m.
Panel Version: 2.8
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Amelogenesis imperfecta
Publications
Eleanor Williams (Genomics England Curator)
Comment on list classification: Leaving rating as amber, but with recommendation for green rating following GMS review. 2 unrelated cases, plus animal model.Created: 19 Aug 2021, 12:38 p.m. | Last Modified: 19 Aug 2021, 12:38 p.m.
Panel Version: 2.11
Additional case from Korea reported in PMID: 33652941 (Kim et al 2021) has the same nucleotide positions affected as in previous case (c.817_818delinsAT, p.(Ala273Met)) in the SP6 gene. The variant was de novo and the child showed unusual root development, taurodontism, and severe hypoplastic AI.Created: 19 Aug 2021, 12:32 p.m. | Last Modified: 19 Aug 2021, 12:32 p.m.
Panel Version: 2.8
Comment on list classification: Changing rating from red to amber. 1 case plus rodent models reported.Created: 12 Jun 2020, 4:48 p.m. | Last Modified: 12 Jun 2020, 4:48 p.m.
Panel Version: 2.7
PMID: 32167558 - Smith et al 2020 - report a 2 bp variant c.817_818GC>AA in SP6 in a Caucasian family with autosomal dominant hypoplastic AI which results in a missense change. Report that mice and rat knockouts also show a dental phenotype (PMID: 18156176, 18297738, 22676574 )
Sources: LiteratureCreated: 12 Jun 2020, 4:47 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Amelogenesis Imperfecta
Publications
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- NHS GMS
- Expert Review Green
- Literature
- Phenotypes
-
- Amelogenesis Imperfecta, MONDO:0019507
- OMIM
- 608613
- Clinvar variants
- Variants in SP6
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q3_21_rating was removed from gene: SP6.
Added New Source, Added New Source, Status Update
Achchuthan Shanmugasundram (Genomics England Curator)Source Expert Review Green was added to SP6. Source NHS GMS was added to SP6. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: sp6 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: SP6 were changed from Amelogenesis Imperfecta to Amelogenesis Imperfecta, MONDO:0019507
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: SP6 were set to 32167558; 18156176; 18297738; 22676574
Added Tag
Eleanor Williams (Genomics England Curator)Tag Q3_21_rating tag was added to gene: SP6.
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: SP6 were set to 32167558
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: sp6 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: SP6 was added gene: SP6 was added to Amelogenesis imperfecta. Sources: Literature Mode of inheritance for gene: SP6 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Publications for gene: SP6 were set to 32167558 Phenotypes for gene: SP6 were set to Amelogenesis Imperfecta Review for gene: SP6 was set to AMBER