Familial hypoparathyroidism

Gene: TBX1

Green List (high evidence)

TBX1 (T-box 1)
EnsemblGeneIds (GRCh38): ENSG00000184058
EnsemblGeneIds (GRCh37): ENSG00000184058
OMIM: 602054, Gene2Phenotype
TBX1 is in 10 panels

4 reviews

Eleanor Williams (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green following NHS Genomic Medicine Service approval.
Created: 6 Dec 2024, 1:11 p.m. | Last Modified: 6 Dec 2024, 1:11 p.m.
Panel Version: 2.17

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

Comment on list classification: There is sufficient evidence to promote this gene to Green on this panel (at least three cases of parathyroid dysfunction, including a patient with isolated hypoparathyroidism) at the next GMS panel update.
Created: 14 Mar 2023, 12:11 p.m. | Last Modified: 14 Mar 2023, 12:11 p.m.
Panel Version: 2.10
TBX1 is encompassed by a region deleted in DiGeorge syndrome (22q11.2). There is some, albeit more limited, evidence linking SNVs with overlapping phenotypes.

Yagi et al 2003 (PMID: 14585638) found three cases with conotruncal anomaly face syndrome or DiGeorge's syndrome including velopharyngeal insufficiency of the cleft palate and/or thymus and parathyroid abnormalities but no cognitive deficits. Zweier et al., 2007 (PMID: 17273972) reported a heterozygous missense variant in a familial case of Shprintzen syndrome and Li et al., 2018 (PMID: 30137364) described two families with splice-altering variants in whom phenotypes ranged from isolated hypoparathyroidism (with reduced penetrance) to hypoparathyroidism with additional DiGeorge sequence-like features.

Also details about an addition case at NWGLH provided by Ronnie Wright on R15 panel. Patient harbouring a de novo final exon frameshift variant referred via immunology clinician and has clinical diagnosis of DiGeorge syndrome, including hypoparathyroidism (prior 22q11 deletion testing negative).
Created: 14 Mar 2023, 12:09 p.m. | Last Modified: 14 Mar 2023, 12:09 p.m.
Panel Version: 2.7

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Phenotypes
DiGeorge syndrome, OMIM:188400; Conotruncal anomaly face syndrome, OMIM:217095; Velocardiofacial syndrome, OMIM:192430

Publications

Ivone Leong (Genomics England Curator)

Comment on list classification: PMID: 30137364 reports on 2 unrelated families who have hypoparathyroidism and have splice variants in the TBX1 gene that leads to exon skipping. This suggests that TBX1 may have a role in hypoparathyroidism as stated in Treena Cranston's (Oxford) review.
Created: 10 Jan 2019, 2:37 p.m.

Treena Cranston (Oxford)

Red List (low evidence)

Red evidence to date but recent publication of this gene (PMID: 30137364) showing association with isolated hypoparathyroidism. Too early for diagnostic panels but of interest for research, so flagging for future consideration
Sources: Other
Created: 9 Jan 2019, 7:02 p.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Publications

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • NHS GMS
  • Expert Review Green
Phenotypes
  • DiGeorge syndrome, OMIM:188400
  • Conotruncal anomaly face syndrome, OMIM:217095
  • Velocardiofacial syndrome, OMIM:192430
OMIM
602054
Clinvar variants
Variants in TBX1
Penetrance
unknown
Publications
Panels with this gene

History Filter Activity

6 Dec 2024, Gel status: 3

Removed Tag

Eleanor Williams (Genomics England Curator)

Tag Q1_23_promote_green was removed from gene: TBX1.

6 Dec 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Eleanor Williams (Genomics England Curator)

Source Expert Review Green was added to TBX1. Source NHS GMS was added to TBX1. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

14 Mar 2023, Gel status: 2

Entity classified by Genomics England curator

Arina Puzriakova (Genomics England Curator)

Gene: tbx1 has been classified as Amber List (Moderate Evidence).

14 Mar 2023, Gel status: 1

Set Phenotypes

Arina Puzriakova (Genomics England Curator)

Phenotypes for gene: TBX1 were changed from to DiGeorge syndrome, OMIM:188400; Conotruncal anomaly face syndrome, OMIM:217095; Velocardiofacial syndrome, OMIM:192430

14 Mar 2023, Gel status: 1

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: TBX1 were set to 30137364

14 Mar 2023, Gel status: 1

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag Q1_23_promote_green tag was added to gene: TBX1.

10 Jan 2019, Gel status: 1

Entity classified by Genomics England curator

Ivone Leong (Genomics England Curator)

Gene: tbx1 has been classified as Red List (Low Evidence).

10 Jan 2019, Gel status: 0

Set publications

Ivone Leong (Genomics England Curator)

Publications for gene: TBX1 were set to PMID: 30137364

9 Jan 2019, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set penetrance

Treena Cranston (Oxford)

gene: TBX1 was added gene: TBX1 was added to Familial hypoparathyroidism. Sources: Other Mode of inheritance for gene: TBX1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TBX1 were set to PMID: 30137364 Penetrance for gene: TBX1 were set to unknown Review for gene: TBX1 was set to RED