Intellectual disability update Jan 2018

Gene: HAX1

Amber List (moderate evidence)

HAX1 (HCLS1 associated protein X-1)
EnsemblGeneIds (GRCh38): ENSG00000143575
EnsemblGeneIds (GRCh37): ENSG00000143575
OMIM: 605998, Gene2Phenotype
HAX1 is in 10 panels

2 reviews

Helen Brittain (Genomics England Curator)

Comment when marking as ready: Majority have not had ID, further evidence needed as to frequency of ID / seizures and perhaps mutational spectrum.
Created: 8 Mar 2018, 2:15 p.m.
Comment on list classification: To date, a minority of cases have had ID or seizures, although there is some evidence emerging about the possibility of alternative transcripts. At present all cases have presented with severe congenital neutropaenia and infectious complications and would therefore be expected to present in this manner. Therefore there is a question regarding the clinical utility in isolated ID / seizure presentation
Created: 8 Mar 2018, 2:14 p.m.

Sarah Leigh (Genomics England Curator)

Associated with phenotype in OMIM and as a confirmed G2P association. At least 8 variants have been reported in Neutropenia, severe congenital 3, autosomal recessive (610738), three of these were in cases who also displayed mental retardation, with p.Arg86* reported in 3 unrelated Japanese patients (PMID18611981).

Reported as a gene linked to isolated ID and associated disorders (Vissers 2016 PMID 26503795) and as an ID candidate gene (Gilessen 2014 PMID 24896178).
Created: 6 Mar 2018, 7:11 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Radboud University Medical Center, Nijmegen
Phenotypes
  • Neutropenia, severe congenital 3, autosomal recessive 610738
Tags
watchlist
OMIM
605998
Clinvar variants
Variants in HAX1
Penetrance
None
Publications
Panels with this gene

History Filter Activity

8 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

8 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

6 Mar 2018, Gel status: 3

Set publications

Sarah Leigh (Genomics England Curator)

Publications for HAX1 were set to 18611981; 24896178; 26503795

6 Mar 2018, Gel status: 3

Gene classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

6 Mar 2018, Gel status: 1

Set publications

Sarah Leigh (Genomics England Curator)

Publications for HAX1 were set to 24896178; 26503795

6 Mar 2018, Gel status: 1

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for HAX1 were set to Neutropenia, severe congenital 3, autosomal recessive 610738

6 Mar 2018, Gel status: 1

Set mode of inheritance

Sarah Leigh (Genomics England Curator)

Mode of inheritance for HAX1 was changed from to BIALLELIC, autosomal or pseudoautosomal

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

HAX1 was added to Intellectual disability update Jan 2018 panel. Sources: Radboud University Medical Center, Nijmegen,Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

HAX1 was created by Ellen McDonagh