Intellectual disability update Jan 2018
Gene: HAX1EnsemblGeneIds (GRCh38): ENSG00000143575
EnsemblGeneIds (GRCh37): ENSG00000143575
OMIM: 605998, Gene2Phenotype
HAX1 is in 10 panels
2 reviews
Helen Brittain (Genomics England Curator)
Comment when marking as ready: Majority have not had ID, further evidence needed as to frequency of ID / seizures and perhaps mutational spectrum.Created: 8 Mar 2018, 2:15 p.m.
Comment on list classification: To date, a minority of cases have had ID or seizures, although there is some evidence emerging about the possibility of alternative transcripts. At present all cases have presented with severe congenital neutropaenia and infectious complications and would therefore be expected to present in this manner. Therefore there is a question regarding the clinical utility in isolated ID / seizure presentationCreated: 8 Mar 2018, 2:14 p.m.
Sarah Leigh (Genomics England Curator)
Associated with phenotype in OMIM and as a confirmed G2P association. At least 8 variants have been reported in Neutropenia, severe congenital 3, autosomal recessive (610738), three of these were in cases who also displayed mental retardation, with p.Arg86* reported in 3 unrelated Japanese patients (PMID18611981).
Reported as a gene linked to isolated ID and associated disorders (Vissers 2016 PMID 26503795) and as an ID candidate gene (Gilessen 2014 PMID 24896178).Created: 6 Mar 2018, 7:11 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Neutropenia, severe congenital 3, autosomal recessive 610738
- Tags
- OMIM
- 605998
- Clinvar variants
- Variants in HAX1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Haematological malignancies for rare disease
- Haematological malignancies cancer susceptibility
- Cytopenia - NOT Fanconi anaemia
- Intellectual disability
- Early onset or syndromic epilepsy
- Cytopenias and congenital anaemias
- COVID-19 research
- Primary immunodeficiency or monogenic inflammatory bowel disease
- Fetal anomalies
- DDG2P
History Filter Activity
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for HAX1 were set to 18611981; 24896178; 26503795
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for HAX1 were set to 24896178; 26503795
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for HAX1 were set to Neutropenia, severe congenital 3, autosomal recessive 610738
Set mode of inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for HAX1 was changed from to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)HAX1 was added to Intellectual disability update Jan 2018 panel. Sources: Radboud University Medical Center, Nijmegen,Expert Review Red
Created
Ellen McDonagh (Genomics England Curator)HAX1 was created by Ellen McDonagh