Intellectual disability update Jan 2018

Gene: KLHL15

Amber List (moderate evidence)

KLHL15 (kelch like family member 15)
EnsemblGeneIds (GRCh38): ENSG00000174010
EnsemblGeneIds (GRCh37): ENSG00000174010
OMIM: 300980, Gene2Phenotype
KLHL15 is in 2 panels

1 review

Louise Daugherty (Genomics England Curator)

Comment on list classification: Changed status from Red to Amber, there are currently only two unrelated cases with Intellectual Disability and only pathogenic deletion variants have been reported for this gene.
Created: 5 Mar 2018, 11:13 a.m.
added deletions tag, currently only pathogenic deletion variants reported for this gene.
Created: 5 Mar 2018, 11:10 a.m.
Comment on phenotypes: added phenotype from OMIM
Created: 5 Mar 2018, 10:58 a.m.
Comment on publications: Added publications to support the association to the ID phenotype Mignon-Ravix et al. (2014) PMID: 24817631 reported a boy with X-linked mental retardation-103 (MRX103) and Hu et al. (2016) PMID: 25644381 reported a large multigenerational family (8 affected males) with MRX103
Created: 5 Mar 2018, 10:57 a.m.
Comment on mode of inheritance: added MOI from PMID:24817631, 25644381
Created: 5 Mar 2018, 10:48 a.m.
This is a possible DD gene in Gene2Phenotype for intellectual disability
Created: 5 Mar 2018, 10:40 a.m.
Comment on publications: This was a candidate intellectual disability gene from Grozeva et al., (2015) PMID: 26350204, there is now evidence in the literature to support the association between variants of this gene and an observed intellectual disability phenotype.
Created: 5 Mar 2018, 10:36 a.m.

Details

Mode of Inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
Phenotypes
  • Mental retardation, X-linked 103, 300982
  • MRX103
  • Intellectual disability
Tags
deletions
OMIM
300980
Clinvar variants
Variants in KLHL15
Penetrance
None
Publications
Panels with this gene

History Filter Activity

5 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

5 Mar 2018, Gel status: 1

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for KLHL15 were set to Mental retardation, X-linked 103, 300982; MRX103; Intellectual disability

5 Mar 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for KLHL15 were set to 26350204; 24817631; 25644381

5 Mar 2018, Gel status: 1

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for KLHL15 was changed from to X-LINKED: hemizygous mutation in males, biallelic mutations in females

5 Mar 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for KLHL15 were set to 26350204

5 Mar 2018, Gel status: 1

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

KLHL15 was added to Intellectual disability update Jan 2018 panel. Sources: Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

KLHL15 was created by Ellen McDonagh