Intellectual disability update Jan 2018

Gene: MAPK10

Amber List (moderate evidence)

MAPK10 (mitogen-activated protein kinase 10)
EnsemblGeneIds (GRCh38): ENSG00000109339
EnsemblGeneIds (GRCh37): ENSG00000109339
OMIM: 602897, Gene2Phenotype
MAPK10 is in 4 panels

2 reviews

Helen Brittain (Genomics England Curator)

Comment when marking as ready: Small amount of evidence for variants in this gene with an isolated ID presentation. Watchlist tag added.
Created: 8 Mar 2018, 3:24 p.m.

Louise Daugherty (Genomics England Curator)

I don't know

added watchlist tag
Created: 8 Mar 2018, 3:21 p.m.
Comment on list classification: Changed from Red to Amber after clinical review comments
Created: 8 Mar 2018, 3:21 p.m.
After clinical review it was thought this gene should rated Amber. HB commented that PMID 23329067 details two cases with translocations where the breakpoints include MAPK10. One presented with ID in the absence of seizures, although cannot find wider support for this hypothesis. Worth marking as amber and watchlist on the ID panel.
Created: 8 Mar 2018, 3:20 p.m.
Lennox-Gastaut syndrome (LGS) belongs to the group of severe childhood epileptic encephalopathies and is a severe form of epilepsy associated with intractable seizures and impaired cognition. Although there is enough evidence to support the phenotype, MAPK10 is a candidate gene tested for this disorder and variants within this gene are reported as part of current diagnostic practice.
Created: 7 Mar 2018, 11:09 a.m.
Comment on phenotypes: added phenotype from Orphanet and Gene2Phenotype
Created: 7 Mar 2018, 11:07 a.m.
Monoallelic confirmed on G2P, not on the imprinted gene list. This is a possible DD gene in Gene2Phenotype for EPILEPTIC ENCEPHALOPATHY LENNOX-GASTAUT TYPE
Created: 7 Mar 2018, 11 a.m.
I am not sure if this should be a Green on the Intellectual Disability panel since it epilepsy associated with intractable seizures that result in the mental deterioration, ID is not independently present? It is currently rated Green on the Epilepsy Plus and Epileptic encephalopathy panels. To be reviewed by internal clinical team as to wether this gene should be Green on ID panel.
Created: 7 Mar 2018, 10:57 a.m.

Details

Mode of Inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
Phenotypes
  • Lennox-Gastaut syndrome
  • LGS
  • Epileptic Encephalopathy
  • Epileptic Encephalopathy Lennox-Gastaut type
Tags
watchlist
OMIM
602897
Clinvar variants
Variants in MAPK10
Penetrance
None
Publications
Panels with this gene

History Filter Activity

8 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

8 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

7 Mar 2018, Gel status: 1

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for MAPK10 were set to Lennox-Gastaut syndrome; LGS; Epileptic Encephalopathy; Epileptic Encephalopathy Lennox-Gastaut type

7 Mar 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for MAPK10 were set to 23329067

7 Mar 2018, Gel status: 1

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for MAPK10 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

MAPK10 was added to Intellectual disability update Jan 2018 panel. Sources: Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

MAPK10 was created by Ellen McDonagh