Intellectual disability update Jan 2018

Gene: NDST1

Green List (high evidence)

NDST1 (N-deacetylase and N-sulfotransferase 1)
EnsemblGeneIds (GRCh38): ENSG00000070614
EnsemblGeneIds (GRCh37): ENSG00000070614
OMIM: 600853, Gene2Phenotype
NDST1 is in 2 panels

2 reviews

Helen Brittain (Genomics England Curator)

Comment when marking as ready: Sufficient cases, appropriate phenotype
Created: 5 Mar 2018, 12:27 p.m.
Comment on mode of pathogenicity: All reported pathogenic variants to date have been missense; occurring at highly conserved residues in the sulfotransferase domain, predicted to change the substrate-binding domain and/or to disrupt the 3-dimensional structure of the enzyme.
Created: 5 Mar 2018, 12:26 p.m.

Louise Daugherty (Genomics England Curator)

Comment on list classification: Changed rating from Red to Green as there is enough evidence in the literature to support intellectual disability phenotype.
Created: 15 Feb 2018, 4:29 p.m.
Comment on phenotypes: Mental retardation, autosomal recessive 46 (MRT46) is a disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRT46 manifestations include delayed psychomotor development apparent from infancy or early childhood, delayed or absent expressive speech, hypotonia, and therapy-responsive seizures in some patients. Behavioral abnormalities are variable and include aggression, self-injurious behavior, and sleep disturbances.
Created: 15 Feb 2018, 4:26 p.m.
Comment on mode of inheritance: from OMIM The transmission pattern of MRT46 in the families reported by Reuter et al., 2014 (PMID:25125150) was consistent with autosomal recessive inheritance.
Created: 15 Feb 2018, 4:22 p.m.
Comment on publications: Reuter et al., 2014 (PMID:25125150) reported 8 patients from 4 unrelated families with nonsyndromic intellectual disability. Two of the families had previously been reported by Najmabadi et al., 2011 (PMID:21937992)
Created: 15 Feb 2018, 4:20 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mental retardation, autosomal recessive 46, 616116
  • MRT46
  • Intellectual disability
OMIM
600853
Clinvar variants
Variants in NDST1
Penetrance
None
Publications
Mode of Pathogenicity
Other - please provide details in the comments
Panels with this gene

History Filter Activity

5 Mar 2018, Gel status: 3

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

5 Mar 2018, Gel status: 3

Set mode of pathogenicity

Helen Brittain (Genomics England Curator)

Mode of pathogenicity for NDST1 was changed to Other - please provide details in the comments

5 Mar 2018, Gel status: 3

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for NDST1 were set to Mental retardation, autosomal recessive 46, 616116; MRT46; Intellectual disability

15 Feb 2018, Gel status: 3

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

15 Feb 2018, Gel status: 1

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for NDST1 were set to Mental retardation, autosomal recessive 46, 616116; MRT46

15 Feb 2018, Gel status: 1

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for NDST1 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal

15 Feb 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for NDST1 were set to 25125150; 21937992

15 Feb 2018, Gel status: 1

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for NDST1 was changed from to BIALLELIC, autosomal or pseudoautosomal

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

NDST1 was added to Intellectual disability update Jan 2018 panel. Sources: Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

NDST1 was created by Ellen McDonagh