Structural eye disease
Gene: NR6A1EnsemblGeneIds (GRCh38): ENSG00000148200
EnsemblGeneIds (GRCh37): ENSG00000148200
OMIM: 602778, Gene2Phenotype
NR6A1 is in 1 panel
2 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
Comment on list classification: There is sufficient evidence available for the promotion of this gene to green rating in the next GMS update.Created: 18 Jul 2025, 12:31 p.m. | Last Modified: 18 Jul 2025, 12:31 p.m.
Panel Version: 4.16
As reviewed by Siying Lin, PMID:40610405 reported six unrelated families with heterozygous rare variants (missense, nonsense, frameshift, or large deletion) in NR6A1 gene presenting with an autosomal dominant oculo-vertebral-renal (OVR) syndrome characterised by colobomatous microphthalmia, missing vertebrae and congenital kidney abnormalities. The variants showed incomplete penetrance and variable expressivity. Functional evidence from in silico, cellular, and zebrafish experiments showed that reported variants were either pathogenic or likely pathogenic for OVR syndrome.
This gene has not yet been associated with relevant phenotypes in OMIM, Gene2Phenotype or ClinGen.Created: 18 Jul 2025, 12:27 p.m. | Last Modified: 18 Jul 2025, 12:27 p.m.
Panel Version: 4.12
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
coloboma, MONDO:0001476; microphthalmia, MONDO:0021129
Publications
Siying Lin (Moorfields Eye Hospital)
PMID 40610405: 6 unrelated families with autosomal dominant syndromic form of colobomatous microphthalmia and missing vertebrae with or without congenital kidney abnormalities
Sources: LiteratureCreated: 4 Jul 2025, 6:56 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
microphthalmia, coloboma
Publications
- PMID: 40610405
Mode of pathogenicity
Other
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Expert Review Amber
- Phenotypes
-
- coloboma, MONDO:0001476
- microphthalmia, MONDO:0021129
- Tags
- OMIM
- 602778
- Clinvar variants
- Variants in NR6A1
- Penetrance
- Incomplete
- Publications
- Mode of Pathogenicity
- Other
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: nr6a1 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: NR6A1 were changed from microphthalmia, coloboma to coloboma, MONDO:0001476; microphthalmia, MONDO:0021129
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: NR6A1 were set to PMID: 40610405
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: NR6A1 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Added Tag, Added Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q3_25_promote_green tag was added to gene: NR6A1. Tag Q3_25_NHS_review tag was added to gene: NR6A1.
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity
Siying Lin (Moorfields Eye Hospital)gene: NR6A1 was added gene: NR6A1 was added to Structural eye disease. Sources: Literature Mode of inheritance for gene: NR6A1 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Publications for gene: NR6A1 were set to PMID: 40610405 Phenotypes for gene: NR6A1 were set to microphthalmia, coloboma Penetrance for gene: NR6A1 were set to Incomplete Mode of pathogenicity for gene: NR6A1 was set to Other Review for gene: NR6A1 was set to GREEN