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Structural eye disease

Gene: NUP188

Green List (high evidence)

NUP188 (nucleoporin 188)
EnsemblGeneIds (GRCh38): ENSG00000095319
EnsemblGeneIds (GRCh37): ENSG00000095319
OMIM: 615587, Gene2Phenotype
NUP188 is in 7 panels

5 reviews

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to Green and the mode of inheritance set to 'BIALLELIC, autosomal or pseudoautosomal' following NHS Genomic Medicine Service approval.
Created: 2 May 2024, 1:56 p.m. | Last Modified: 2 May 2024, 1:56 p.m.
Panel Version: 3.79

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

NUP188 biallelic terminating variants have been associated with Sandestig-Stefanova syndrome (OMIM:618804). PMID: 36158057 describes the first male case of Sandestig-Stefanova syndrome and presents a literature review, that shows that microphthalmia (8/8 cases) and bilateral congenital cataracts (6/8 cases) are commonly reported in patients with biallelic NUP188 variants.
Created: 31 Oct 2023, 10:56 a.m. | Last Modified: 31 Oct 2023, 10:56 a.m.
Panel Version: 3.52
Comment on list classification: There is enough evidence for this gene to be rated GREEN at the next major review.
Created: 31 Oct 2023, 10:37 a.m. | Last Modified: 31 Oct 2023, 10:37 a.m.
Panel Version: 3.52

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Hannah Knight (NIHR BioResource - University of Cambridge)

Green List (high evidence)

PMID: 36158057 - case report of a boy with a range of features, including microphthalmia. Novel, homozygous nonsense mutation in NUP188 identified
Created: 18 Sep 2023, 12:27 p.m. | Last Modified: 18 Sep 2023, 12:27 p.m.
Panel Version: 3.4

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Sandestig-Stefanova syndrome

Publications

Ivone Leong (Genomics England Curator)

Comment on list classification: New gene added by Nicola Ragge (Birmingham Women's and Children's NHS Foundation Hospital Trust). This gene has been promoted from Red to Amber based on available evidence.
Created: 20 Jan 2021, 10:37 a.m. | Last Modified: 20 Jan 2021, 10:37 a.m.
Panel Version: 1.33

Nicola Ragge (Birmingham Women's and Children's NHS Foundation Hospital Trust)

I don't know

Sandestig et al: 2 unrelated patients microphthalmia and multiple other features with 2 different homozygous nonsense gene variants, heterozygous in parents. Muir et al reported 6 unrelated individuals with cataract - one has microphthalmia according to supplementary data, but variant is same as in other individuals with just cataract. Borderline green/Amber for structural eye panel, but should be green on cataract panel.
Created: 20 Jan 2021, 10:29 a.m. | Last Modified: 20 Jan 2021, 10:29 a.m.
Panel Version: 1.29

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Sandestig-Stefanove Syndrome, AR, MIM:618804

Publications

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Expert list
Phenotypes
  • Sandestig-Stefanova syndrome, OMIM:618804, MONDO:0032926
OMIM
615587
Clinvar variants
Variants in NUP188
Penetrance
None
Publications
Panels with this gene

History Filter Activity

2 May 2024, Gel status: 3

Removed Tag, Removed Tag

Arina Puzriakova (Genomics England Curator)

Tag Q4_23_promote_green was removed from gene: NUP188. Tag Q4_23_NHS_review was removed from gene: NUP188.

2 May 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Arina Puzriakova (Genomics England Curator)

Source NHS GMS was added to NUP188. Source Expert Review Green was added to NUP188. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

31 Oct 2023, Gel status: 2

Removed Tag, Added Tag, Added Tag

Sarah Leigh (Genomics England Curator)

Tag watchlist was removed from gene: NUP188. Tag Q4_23_promote_green tag was added to gene: NUP188. Tag Q4_23_NHS_review tag was added to gene: NUP188.

31 Oct 2023, Gel status: 2

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: nup188 has been classified as Amber List (Moderate Evidence).

31 Oct 2023, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: NUP188 were set to 32021605; 32275884

20 Jan 2021, Gel status: 2

Added Tag

Ivone Leong (Genomics England Curator)

Tag watchlist tag was added to gene: NUP188.

20 Jan 2021, Gel status: 2

Entity classified by Genomics England curator

Ivone Leong (Genomics England Curator)

Gene: nup188 has been classified as Amber List (Moderate Evidence).

20 Jan 2021, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Ivone Leong (Genomics England Curator)

gene: NUP188 was added gene: NUP188 was added to Structural eye disease. Sources: Expert list Mode of inheritance for gene: NUP188 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: NUP188 were set to 32021605; 32275884 Phenotypes for gene: NUP188 were set to Sandestig-Stefanova syndrome, OMIM:618804, MONDO:0032926