Mosaic skin disorders - deep sequencing

Gene: GJA1

Red List (low evidence)

GJA1 (gap junction protein alpha 1)
EnsemblGeneIds (GRCh38): ENSG00000152661
EnsemblGeneIds (GRCh37): ENSG00000152661
OMIM: 121014, Gene2Phenotype
GJA1 is in 25 panels

2 reviews

Ida Ertmanska (Genomics England Curator)

Red List (low evidence)

Comment on list classification: As there is only one individual reported in literature with a skin disorder and a mosaic GJA1 variant, this gene should remain Red for Mosaic skin disorders - deep sequencing, until more evidence emerges.
Created: 2 Dec 2025, 5:09 p.m. | Last Modified: 2 Dec 2025, 5:09 p.m.
Panel Version: 3.5
PMID: 27890787 Umegaki-Arao et al., 2017
14-year-old girl with inflammatory linear verrucous epidermal nevus (ILVEN); onset at 1yo, worsening over time. At age 14, she developed widespread erythematous plaques and verrucous plaques along Blaschko’s lines on the extremities and buttocks, as well as palmoplantar hyperkeratosis. Hair, teeth, and nails were not affected.
8 candidate variants detected; GJA1 c.131C>T (p.A44V) was the only candidate mutation detected in affected epidermis but not in white blood cells; detected in 22 of 72 reads (30%).
The same variant but germline was reported as causative in erythrokeratodermia variabilis et progressiva (EKVP) in PMID: 25398053 Boyden et al., 2015).
Created: 2 Dec 2025, 5:05 p.m. | Last Modified: 2 Dec 2025, 5:12 p.m.
Panel Version: 3.7

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Phenotypes
inflammatory linear verrucous epidermal nevus, MONDO:0019318

Publications

Veronica Kinsler (UCL)

Green List (high evidence)

Mosaic, potential for germline transmission
Sources: Expert Review
Created: 31 Oct 2025, 2:28 p.m.

Mode of inheritance
Other

Phenotypes
Inflammatory Linear Verrucous Epidermal Naevi (ILVEN)

Publications

History Filter Activity

8 Dec 2025, Gel status: 1

Set mode of inheritance

Arina Puzriakova (Genomics England Curator)

Mode of inheritance for gene: GJA1 was changed from Other to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

8 Dec 2025, Gel status: 1

Set publications

Arina Puzriakova (Genomics England Curator)

Publications for gene: GJA1 were set to PMID:

2 Dec 2025, Gel status: 1

Set Phenotypes

Ida Ertmanska (Genomics England Curator)

Phenotypes for gene: GJA1 were changed from Inflammatory Linear Verrucous Epidermal Naevi (ILVEN) to inflammatory linear verrucous epidermal nevus, MONDO:0019318

2 Dec 2025, Gel status: 1

Set publications

Ida Ertmanska (Genomics England Curator)

Publications for gene: GJA1 were set to PMID: 27890787

2 Dec 2025, Gel status: 1

Entity classified by Genomics England curator

Ida Ertmanska (Genomics England Curator)

Gene: gja1 has been classified as Red List (Low Evidence).

31 Oct 2025, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Veronica Kinsler (UCL)

gene: GJA1 was added gene: GJA1 was added to Mosaic skin disorders - deep sequencing. Sources: Expert Review Mode of inheritance for gene: GJA1 was set to Other Publications for gene: GJA1 were set to PMID: 27890787 Phenotypes for gene: GJA1 were set to Inflammatory Linear Verrucous Epidermal Naevi (ILVEN) Review for gene: GJA1 was set to GREEN