Adult onset hereditary spastic paraplegia
Gene: SLC33A1EnsemblGeneIds (GRCh38): ENSG00000169359
EnsemblGeneIds (GRCh37): ENSG00000169359
OMIM: 603690, Gene2Phenotype
SLC33A1 is in 11 panels
4 reviews
Nick Beauchamp (Sheffield Diagnostic Genetics Service)
Adult and childhood onset; single family reported. No additional patients identified using Sheffield panel.Created: 10 May 2019, 9:35 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications
Variants in this GENE are reported as part of current diagnostic practice
Chris Buxton (North Bristol NHS Trust)
Limited genotype-phenotype correlationCreated: 27 Apr 2019, 4:17 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Spastic paraplegia 42, autosomal dominant
Publications
- Lin et al. (2008)
Louise Daugherty (Genomics England Curator)
Green gene with Red GLH rating, Gene discussed in view of discrepant rating(s) from GLH(s). Red rating agreed at the GMS Neurology Specialist Test Group Webex on 17th May 2019.Created: 21 May 2019, 4:14 p.m.
Review and rating submitted byJames Polke (Neurogenetics Laboratory,Institute of Neurology, London), unless specified in the review comment, on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 4:50 p.m.
Review and rating from Chris Buxton (North Bristol NHS Trust), submitted by Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 27 Apr 2019, 4:30 p.m.
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
several unrelated families published with CCHLND, affected members of a large Chinese family with pure autosomal dominant spastic paraplegia-42 . In sheffield HSP panelCreated: 25 Apr 2019, 1:22 p.m.
Phenotypes
Congenital cataracts, hearing loss, and neurodegeneration 614482, AR:Spastic paraplegia 42, autosomal dominant, 612539 AD
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Red
- Yorkshire and North East GLH
- South West GLH
- NHS GMS
- London North GLH
- Phenotypes
-
- Congenital cataracts, hearing loss, and neurodegeneration 614482, AR:Spastic paraplegia 42, autosomal dominant, 612539 AD
- Spastic paraplegia 42, autosomal dominant
- OMIM
- 603690
- Clinvar variants
- Variants in SLC33A1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Mitochondrial disorders
- Hereditary spastic paraplegia
- DDG2P
- Structural eye disease
- Monogenic hearing loss
- Intellectual disability
- Adult onset hereditary spastic paraplegia
- Fetal anomalies
- Adult onset neurodegenerative disorder
- Bilateral congenital or childhood onset cataracts
- Childhood onset hereditary spastic paraplegia
History Filter Activity
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Red was added to SLC33A1. Rating Changed from Green List (high evidence) to Red List (low evidence)
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene: SLC33A1 were set to Lin et al. (2008)
Added New Source
Louise Daugherty (Genomics England Curator)Source Yorkshire and North East GLH was added to SLC33A1.
Set mode of inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for gene: SLC33A1 was changed from to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Set Phenotypes, Set publications
Louise Daugherty (Genomics England Curator)Added phenotypes Spastic paraplegia 42, autosomal dominant for gene: SLC33A1 Publications for gene SLC33A1 were changed from to Lin et al. (2008)
Added New Source
Louise Daugherty (Genomics England Curator)Source South West GLH was added to SLC33A1.
Added New Source, Set Phenotypes, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to SLC33A1. Added phenotypes Congenital cataracts, hearing loss, and neurodegeneration 614482, AR:Spastic paraplegia 42, autosomal dominant, 612539 AD for gene: SLC33A1 Rating Changed from Red List (low evidence) to Green List (high evidence)
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to SLC33A1.
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: SLC33A1 was added gene: SLC33A1 was added to Hereditary spastic paraplegia - adult onset. Sources: London North GLH Mode of inheritance for gene: SLC33A1 was set to