Genes in panel
- ABCC9 1
- ABL1 1
- ACAN 1
- ACP5 1
- ACVR1 1
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AGA 1
- AGPS 1
- AKT1 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 1
- ARID1B 1
- ARSB 1
- ARSE 2
- ASXL2 1
- ATP6V0A2 1
- ATP7A 1
- B3GALT6 1
- B3GAT3 1
- B4GALT7 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 1
- C21orf2 2
- C2CD3 1
- CA2 1
- CANT1 1
- CASR 1
- CC2D2A 1
- CCDC8 1
- CDC45 2
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 2
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CKAP2L 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COL10A1 1
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 1
- COLEC11 1
- COMP 1
- CREBBP 1
- CRTAP 1
- CSPP1 1
- CTSA 1
- CTSC 1
- CTSK 1
- CUL7 1
- CYP27B1 1
- DDR2 1
- DHCR24 1
- DHODH 1
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNMT3A 1
- DOCK6 1
- DPM1 1
- DVL1 1
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 1
- EBP 1
- EED 1
- EFNB1 1
- EFTUD2 1
- EIF2AK3 1
- ENPP1 1
- EOGT 1
- EP300 1
- ERF 1
- ESCO2 1
- EVC 1
- EVC2 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 1
- FAM111A 1
- FAM20C 1
- FAM58A 2
- FBN1 1
- FBN2 1
- FERMT3 1
- FGF10 2
- FGF16 1
- FGF23 1
- FGFR1 1
- FGFR2 1
- FGFR3 2
- FIG4 1
- FKBP10 1
- FLNA 1
- FLNB 1
- FN1 1
- FUCA1 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 1
- GDF6 1
- GHR 1
- GJA1 1
- GLB1 1
- GLI3 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 1
- GSC 1
- GUSB 1
- HDAC8 1
- HES7 1
- HGSNAT 1
- HOXD11 2
- HOXD13 1
- HPGD 2
- HSPG2 1
- IDH2 1
- IDS 1
- IDUA 1
- IFIH1 1
- IFITM5 1
- IFT122 1
- IFT140 1
- IFT172 1
- IFT80 1
- IGF1R 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 1
- KAT6A 1
- KAT6B 1
- KIF22 1
- KIF7 1
- KMT2D 1
- LBR 1
- LEMD3 1
- LIFR 1
- LMBR1 1
- LMNA 1
- LMX1B 1
- LONP1 1
- LPIN2 1
- LRP4 1
- LRP5 1
- LTBP3 1
- MAFB 1
- MAN2B1 1
- MANBA 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MEGF8 1
- MEOX1 1
- MESP2 1
- MGP 1
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MYCN 1
- NAGLU 1
- NANS 1
- NEK1 1
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 1
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 1
- OAT 1
- OBSL1 1
- OFD1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 1
- PEX5 1
- PEX7 1
- PHEX 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3R1 1
- PITX1 1
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 1
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 1
- PPIB 1
- PRKAR1A 1
- PRMT7 1
- PSAT1 1
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 1
- RAB23 1
- RAB33B 1
- RAD21 1
- RASGRP2 1
- RBM8A 1
- RECQL4 1
- RFT1 1
- RMRP 1
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RUNX2 1
- SALL1 1
- SALL4 1
- SBDS 1
- SCARF2 1
- SEC24D 1
- SERPINF1 1
- SETD2 1
- SF3B4 1
- SFRP4 1
- SGSH 1
- SH3BP2 1
- SH3PXD2B 1
- SHOX 1
- SKI 1
- SLC17A5 1
- SLC26A2 1
- SLC29A3 1
- SLC34A3 1
- SLC35D1 1
- SLC39A13 1
- SLCO2A1 1
- SMAD3 1
- SMAD4 1
- SMARCAL1 1
- SMC1A 1
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX9 1
- SUMF1 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 1
- TBX6 1
- TBXAS1 1
- TCF12 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 2
- TCTN2 1
- TCTN3 1
- TERT 1
- TGDS 1
- TGFB1 1
- TGFB2 1
- TGFBR1 1
- TGFBR2 1
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TTC21B 1
- TWIST1 1
- TYROBP 1
- WDR34 2
- WDR35 1
- WDR60 2
- WISP3 2
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 1
- WRN 1
- XRCC4 1
- XYLT1 1
- YY1 1
- ZMPSTE24 1
- COLEC10 1
- CREB3L1 1
- DCC 1
- DLX6 1
- FBLIM1 1
- FBLN1 1
- FGF9 2
- GDF3 1
- GPX4 1
- GZF1 1
- HDAC4 1
- HNRNPK 1
- HOXA11 2
- HOXA13 2
- ICK 2
- IDH1 1
- IFT43 1
- IFT52 1
- IFT81 1
- LFNG 1
- LTBP2 1
- NIN 1
- PGM3 1
- PIK3CA 1
- PLEKHM1 1
- RBPJ 1
- RIPPLY2 1
- SERPINH1 1
- SP7 1
- TMEM67 1
- UFSP2 1
- WDR19 1
- WNT3 1
- XYLT2 1
- ZIC1 1
- ALX1 1
- ASXL1 1
- B9D1 1
- CD96 2
- MIR17HG 1
- SLCO5A1 1
- SULF1 1
- THPO 1
- TWIST2 1
STRs in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 1 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 1 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 1 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 1 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 1
This Panel is marked as Deleted
GMS Musculoskeletal specialist test group Skeletal dysplasia
Gene: ALX4 Green List (high evidence)
ALX4 (ALX homeobox 4)
EnsemblGeneIds (GRCh38): ENSG00000052850
EnsemblGeneIds (GRCh37): ENSG00000052850
OMIM: 605420, Gene2Phenotype
ALX4 is in 5 panels
EnsemblGeneIds (GRCh38): ENSG00000052850
EnsemblGeneIds (GRCh37): ENSG00000052850
OMIM: 605420, Gene2Phenotype
ALX4 is in 5 panels
1 review
Tracy Lester (Genetics laboratory, Oxford UK)
Green List (high evidence)
Phenotypes listed under Cleidocranial dysplasia and related disorders gp of SD, and Dysostoses with predominant craniofacial involvement gp of SD. Three cases reported - 2 with same variant in consanguineous population - ? Related. Variant in cattle associated with skeletal abnomrality as well (brenig et al 2015). ? sufficient cases to be green. Do you report variants in this gene as part of your current diagnostic practice? YES - PF; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:52 a.m.
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Frontonasal dysplasia 2 613451
Variants in this GENE are reported as part of current diagnostic practice
Created: 6 Mar 2019, 11:52 a.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Frontonasal dysplasia 2 613451
- OMIM
- 605420
- Clinvar variants
- Variants in ALX4
- Penetrance
- None
- Panels with this gene
History Filter Activity
6 Mar 2019, Gel status: 4
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: ALX4 was added gene: ALX4 was added to GMS Musculoskeletal specialist test group Skeletal dysplasia. Sources: NHS GMS,Expert Review Green Mode of inheritance for gene: ALX4 was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal Phenotypes for gene: ALX4 were set to Frontonasal dysplasia 2 613451