Genes in panel
- ABCC9 1
- ABL1 1
- ACAN 1
- ACP5 1
- ACVR1 1
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AGA 1
- AGPS 1
- AKT1 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 1
- ARID1B 1
- ARSB 1
- ARSE 2
- ASXL2 1
- ATP6V0A2 1
- ATP7A 1
- B3GALT6 1
- B3GAT3 1
- B4GALT7 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 1
- C21orf2 2
- C2CD3 1
- CA2 1
- CANT1 1
- CASR 1
- CC2D2A 1
- CCDC8 1
- CDC45 2
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 2
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CKAP2L 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COL10A1 1
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 1
- COLEC11 1
- COMP 1
- CREBBP 1
- CRTAP 1
- CSPP1 1
- CTSA 1
- CTSC 1
- CTSK 1
- CUL7 1
- CYP27B1 1
- DDR2 1
- DHCR24 1
- DHODH 1
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNMT3A 1
- DOCK6 1
- DPM1 1
- DVL1 1
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 1
- EBP 1
- EED 1
- EFNB1 1
- EFTUD2 1
- EIF2AK3 1
- ENPP1 1
- EOGT 1
- EP300 1
- ERF 1
- ESCO2 1
- EVC 1
- EVC2 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 1
- FAM111A 1
- FAM20C 1
- FAM58A 2
- FBN1 1
- FBN2 1
- FERMT3 1
- FGF10 2
- FGF16 1
- FGF23 1
- FGFR1 1
- FGFR2 1
- FGFR3 2
- FIG4 1
- FKBP10 1
- FLNA 1
- FLNB 1
- FN1 1
- FUCA1 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 1
- GDF6 1
- GHR 1
- GJA1 1
- GLB1 1
- GLI3 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 1
- GSC 1
- GUSB 1
- HDAC8 1
- HES7 1
- HGSNAT 1
- HOXD11 2
- HOXD13 1
- HPGD 2
- HSPG2 1
- IDH2 1
- IDS 1
- IDUA 1
- IFIH1 1
- IFITM5 1
- IFT122 1
- IFT140 1
- IFT172 1
- IFT80 1
- IGF1R 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 1
- KAT6A 1
- KAT6B 1
- KIF22 1
- KIF7 1
- KMT2D 1
- LBR 1
- LEMD3 1
- LIFR 1
- LMBR1 1
- LMNA 1
- LMX1B 1
- LONP1 1
- LPIN2 1
- LRP4 1
- LRP5 1
- LTBP3 1
- MAFB 1
- MAN2B1 1
- MANBA 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MEGF8 1
- MEOX1 1
- MESP2 1
- MGP 1
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MYCN 1
- NAGLU 1
- NANS 1
- NEK1 1
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 1
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 1
- OAT 1
- OBSL1 1
- OFD1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 1
- PEX5 1
- PEX7 1
- PHEX 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3R1 1
- PITX1 1
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 1
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 1
- PPIB 1
- PRKAR1A 1
- PRMT7 1
- PSAT1 1
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 1
- RAB23 1
- RAB33B 1
- RAD21 1
- RASGRP2 1
- RBM8A 1
- RECQL4 1
- RFT1 1
- RMRP 1
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RUNX2 1
- SALL1 1
- SALL4 1
- SBDS 1
- SCARF2 1
- SEC24D 1
- SERPINF1 1
- SETD2 1
- SF3B4 1
- SFRP4 1
- SGSH 1
- SH3BP2 1
- SH3PXD2B 1
- SHOX 1
- SKI 1
- SLC17A5 1
- SLC26A2 1
- SLC29A3 1
- SLC34A3 1
- SLC35D1 1
- SLC39A13 1
- SLCO2A1 1
- SMAD3 1
- SMAD4 1
- SMARCAL1 1
- SMC1A 1
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX9 1
- SUMF1 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 1
- TBX6 1
- TBXAS1 1
- TCF12 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 2
- TCTN2 1
- TCTN3 1
- TERT 1
- TGDS 1
- TGFB1 1
- TGFB2 1
- TGFBR1 1
- TGFBR2 1
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TTC21B 1
- TWIST1 1
- TYROBP 1
- WDR34 2
- WDR35 1
- WDR60 2
- WISP3 2
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 1
- WRN 1
- XRCC4 1
- XYLT1 1
- YY1 1
- ZMPSTE24 1
- COLEC10 1
- CREB3L1 1
- DCC 1
- DLX6 1
- FBLIM1 1
- FBLN1 1
- FGF9 2
- GDF3 1
- GPX4 1
- GZF1 1
- HDAC4 1
- HNRNPK 1
- HOXA11 2
- HOXA13 2
- ICK 2
- IDH1 1
- IFT43 1
- IFT52 1
- IFT81 1
- LFNG 1
- LTBP2 1
- NIN 1
- PGM3 1
- PIK3CA 1
- PLEKHM1 1
- RBPJ 1
- RIPPLY2 1
- SERPINH1 1
- SP7 1
- TMEM67 1
- UFSP2 1
- WDR19 1
- WNT3 1
- XYLT2 1
- ZIC1 1
- ALX1 1
- ASXL1 1
- B9D1 1
- CD96 2
- MIR17HG 1
- SLCO5A1 1
- SULF1 1
- THPO 1
- TWIST2 1
STRs in panel
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Regions in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 1 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 1 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 1 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 1 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 1
This Panel is marked as Deleted
GMS Musculoskeletal specialist test group Skeletal dysplasia
Gene: NFIX Green List (high evidence)
NFIX (nuclear factor I X)
EnsemblGeneIds (GRCh38): ENSG00000008441
EnsemblGeneIds (GRCh37): ENSG00000008441
OMIM: 164005, Gene2Phenotype
NFIX is in 7 panels
EnsemblGeneIds (GRCh38): ENSG00000008441
EnsemblGeneIds (GRCh37): ENSG00000008441
OMIM: 164005, Gene2Phenotype
NFIX is in 7 panels
1 review
Tracy Lester (Genetics laboratory, Oxford UK)
Green List (high evidence)
Overgrowth (tall stature) syndromes with skeletal involvement. Several cases; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:52 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Marshall-Smith syndrome 602535; Sotos syndrome 2 614753
Created: 6 Mar 2019, 11:52 a.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Marshall-Smith syndrome 602535
- Sotos syndrome 2 614753
- OMIM
- 164005
- Clinvar variants
- Variants in NFIX
- Penetrance
- None
- Panels with this gene
History Filter Activity
6 Mar 2019, Gel status: 4
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: NFIX was added gene: NFIX was added to GMS Musculoskeletal specialist test group Skeletal dysplasia. Sources: NHS GMS,Expert Review Green Mode of inheritance for gene: NFIX was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Phenotypes for gene: NFIX were set to Marshall-Smith syndrome 602535; Sotos syndrome 2 614753