Genes in panel
- ABCC9 1
- ABL1 1
- ACAN 1
- ACP5 1
- ACVR1 1
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AGA 1
- AGPS 1
- AKT1 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 1
- ARID1B 1
- ARSB 1
- ARSE 2
- ASXL2 1
- ATP6V0A2 1
- ATP7A 1
- B3GALT6 1
- B3GAT3 1
- B4GALT7 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 1
- C21orf2 2
- C2CD3 1
- CA2 1
- CANT1 1
- CASR 1
- CC2D2A 1
- CCDC8 1
- CDC45 2
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 2
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CKAP2L 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COL10A1 1
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 1
- COLEC11 1
- COMP 1
- CREBBP 1
- CRTAP 1
- CSPP1 1
- CTSA 1
- CTSC 1
- CTSK 1
- CUL7 1
- CYP27B1 1
- DDR2 1
- DHCR24 1
- DHODH 1
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNMT3A 1
- DOCK6 1
- DPM1 1
- DVL1 1
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 1
- EBP 1
- EED 1
- EFNB1 1
- EFTUD2 1
- EIF2AK3 1
- ENPP1 1
- EOGT 1
- EP300 1
- ERF 1
- ESCO2 1
- EVC 1
- EVC2 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 1
- FAM111A 1
- FAM20C 1
- FAM58A 2
- FBN1 1
- FBN2 1
- FERMT3 1
- FGF10 2
- FGF16 1
- FGF23 1
- FGFR1 1
- FGFR2 1
- FGFR3 2
- FIG4 1
- FKBP10 1
- FLNA 1
- FLNB 1
- FN1 1
- FUCA1 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 1
- GDF6 1
- GHR 1
- GJA1 1
- GLB1 1
- GLI3 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 1
- GSC 1
- GUSB 1
- HDAC8 1
- HES7 1
- HGSNAT 1
- HOXD11 2
- HOXD13 1
- HPGD 2
- HSPG2 1
- IDH2 1
- IDS 1
- IDUA 1
- IFIH1 1
- IFITM5 1
- IFT122 1
- IFT140 1
- IFT172 1
- IFT80 1
- IGF1R 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 1
- KAT6A 1
- KAT6B 1
- KIF22 1
- KIF7 1
- KMT2D 1
- LBR 1
- LEMD3 1
- LIFR 1
- LMBR1 1
- LMNA 1
- LMX1B 1
- LONP1 1
- LPIN2 1
- LRP4 1
- LRP5 1
- LTBP3 1
- MAFB 1
- MAN2B1 1
- MANBA 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MEGF8 1
- MEOX1 1
- MESP2 1
- MGP 1
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MYCN 1
- NAGLU 1
- NANS 1
- NEK1 1
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 1
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 1
- OAT 1
- OBSL1 1
- OFD1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 1
- PEX5 1
- PEX7 1
- PHEX 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3R1 1
- PITX1 1
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 1
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 1
- PPIB 1
- PRKAR1A 1
- PRMT7 1
- PSAT1 1
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 1
- RAB23 1
- RAB33B 1
- RAD21 1
- RASGRP2 1
- RBM8A 1
- RECQL4 1
- RFT1 1
- RMRP 1
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RUNX2 1
- SALL1 1
- SALL4 1
- SBDS 1
- SCARF2 1
- SEC24D 1
- SERPINF1 1
- SETD2 1
- SF3B4 1
- SFRP4 1
- SGSH 1
- SH3BP2 1
- SH3PXD2B 1
- SHOX 1
- SKI 1
- SLC17A5 1
- SLC26A2 1
- SLC29A3 1
- SLC34A3 1
- SLC35D1 1
- SLC39A13 1
- SLCO2A1 1
- SMAD3 1
- SMAD4 1
- SMARCAL1 1
- SMC1A 1
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX9 1
- SUMF1 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 1
- TBX6 1
- TBXAS1 1
- TCF12 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 2
- TCTN2 1
- TCTN3 1
- TERT 1
- TGDS 1
- TGFB1 1
- TGFB2 1
- TGFBR1 1
- TGFBR2 1
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TTC21B 1
- TWIST1 1
- TYROBP 1
- WDR34 2
- WDR35 1
- WDR60 2
- WISP3 2
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 1
- WRN 1
- XRCC4 1
- XYLT1 1
- YY1 1
- ZMPSTE24 1
- COLEC10 1
- CREB3L1 1
- DCC 1
- DLX6 1
- FBLIM1 1
- FBLN1 1
- FGF9 2
- GDF3 1
- GPX4 1
- GZF1 1
- HDAC4 1
- HNRNPK 1
- HOXA11 2
- HOXA13 2
- ICK 2
- IDH1 1
- IFT43 1
- IFT52 1
- IFT81 1
- LFNG 1
- LTBP2 1
- NIN 1
- PGM3 1
- PIK3CA 1
- PLEKHM1 1
- RBPJ 1
- RIPPLY2 1
- SERPINH1 1
- SP7 1
- TMEM67 1
- UFSP2 1
- WDR19 1
- WNT3 1
- XYLT2 1
- ZIC1 1
- ALX1 1
- ASXL1 1
- B9D1 1
- CD96 2
- MIR17HG 1
- SLCO5A1 1
- SULF1 1
- THPO 1
- TWIST2 1
STRs in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 1 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 1 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 1 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 1 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 1
This Panel is marked as Deleted
GMS Musculoskeletal specialist test group Skeletal dysplasia
Gene: SCARF2 Green List (high evidence)
SCARF2 (scavenger receptor class F member 2)
EnsemblGeneIds (GRCh38): ENSG00000244486
EnsemblGeneIds (GRCh37): ENSG00000244486
OMIM: 613619, Gene2Phenotype
SCARF2 is in 7 panels
EnsemblGeneIds (GRCh38): ENSG00000244486
EnsemblGeneIds (GRCh37): ENSG00000244486
OMIM: 613619, Gene2Phenotype
SCARF2 is in 7 panels
1 review
Tracy Lester (Genetics laboratory, Oxford UK)
Green List (high evidence)
Van den Ende-Gupta syndrome is an autosomal recessive disorder characterized by severe contractual arachnodactyly from birth and distinctive facial dysmorphism, including triangular face, malar hypoplasia, narrow nose, everted lips, and blepharophimosis. Skeletal anomalies include slender ribs, hooked clavicles, and dislocated radial head. >3 cases reported; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:52 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Van den Ende-Gupta syndrome 600920
Created: 6 Mar 2019, 11:52 a.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Van den Ende-Gupta syndrome 600920
- OMIM
- 613619
- Clinvar variants
- Variants in SCARF2
- Penetrance
- None
- Panels with this gene
History Filter Activity
6 Mar 2019, Gel status: 4
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: SCARF2 was added gene: SCARF2 was added to GMS Musculoskeletal specialist test group Skeletal dysplasia. Sources: NHS GMS,Expert Review Green Mode of inheritance for gene: SCARF2 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: SCARF2 were set to Van den Ende-Gupta syndrome 600920