Genes in panel
- ADNP 1
- ANK2 1
- ARID1B 1
- ASH1L 1
- ASXL3 1
- CHD2 1
- CHD8 1
- CUL3 1
- DSCAM 1
- DYRK1A 1
- GRIN2B 1
- KATNAL2 1
- KMT2A 1
- KMT5B 1
- MYT1L 1
- NAA15 1
- POGZ 1
- PTEN 2
- RAB39B 2
- RELN 1
- SCN2A 1
- SETD5 1
- SHANK3 1
- SYNGAP1 1
- TBR1 1
- TRIP12 1
- ZNF292 2
- ANKRD11 1
- BAZ2B 2
- BCKDK 1
- BCL11A 1
- CACNA1D 1
- CACNA1H 1
- CACNA2D3 1
- CIC 1
- CMIP 3
- CNOT3 1
- CNTN4 1
- CNTNAP2 1
- CTNND2 1
- CUX1 1
- DDX3X 1
- DEAF1 1
- DIP2C 1
- ERBIN 1
- FOXP1 1
- GABRB3 1
- GIGYF2 1
- GRIA1 1
- GRIP1 1
- ILF2 1
- INTS6 1
- IRF2BPL 1
- KAT2B 1
- KDM5B 1
- KDM6A 1
- KMT2C 1
- LEO1 1
- MAGEL2 1
- MBOAT7 1
- MECP2 1
- MED13 1
- MED13L 1
- MET 1
- NCKAP1 1
- NLGN3 1
- NRXN1 1
- PHF3 1
- PTCHD1 1
- RANBP17 1
- RIMS1 1
- SCN9A 1
- SHANK2 1
- SLC6A1 1
- SMARCC2 1
- SPAST 1
- SRCAP 1
- SRSF11 1
- TAOK2 1
- TBL1XR1 1
- TCF20 1
- TNRC6B 1
- TRIO 1
- UBN2 1
- UPF3B 1
- USP15 1
- USP7 1
- WAC 1
- WDFY3 1
- ABAT 1
- ABCA10 1
- ABCA13 1
- ABCA7 1
- ACE 1
- ACHE 1
- ACTN4 1
- ADA 1
- ADCY3 1
- ADCY5 1
- ADK 1
- ADORA2A 1
- ADORA3 1
- ADRB2 1
- AFF2 1
- AGAP1 1
- AGAP2 1
- AGBL4 1
- AGMO 1
- AGO1 1
- AGTR2 1
- AHDC1 1
- AKAP9 1
- AMPD1 1
- AMT 1
- ANK3 1
- ANKS1B 1
- ANXA1 1
- APBA2 1
- APBB1 1
- APH1A 1
- AR 1
- ARHGAP11B 1
- ARHGAP32 1
- ARHGAP5 1
- ARHGEF10 1
- ARHGEF9 1
- ARNT2 1
- ASAP2 1
- ASMT 1
- ASPM 1
- ASTN2 1
- ATP10A 1
- ATP1A1 1
- ATP1A3 1
- ATP2B2 1
- ATP6V0A2 1
- ATRX 1
- AUTS2 1
- AVPR1A 1
- AVPR1B 1
- AZGP1 1
- BBS4 1
- BCAS1 1
- BICDL1 1
- BIRC6 1
- BRCA2 1
- BRD4 1
- BRSK1 1
- BST1 1
- BTAF1 1
- C15orf62 1
- C3orf58 1
- C4B 1
- CA6 1
- CACNA1B 1
- CACNA1E 1
- CACNA1F 1
- CACNA1G 1
- CACNA1I 1
- CACNA2D1 1
- CACNB2 1
- CADM1 1
- CADM2 1
- CADPS2 1
- CAMK2A 1
- CAMK4 1
- CAPN12 1
- CAPRIN1 1
- CARD11 1
- CASC4 2
- CASK 1
- CC2D1A 1
- CCDC88C 1
- CCDC91 1
- CCNG1 1
- CCT4 1
- CD276 1
- CD38 1
- CD99L2 1
- CDC42BPB 1
- CDH10 1
- CDH11 1
- CDH13 1
- CDH22 1
- CDH8 1
- CDH9 1
- CECR2 1
- CELF4 1
- CELF6 1
- CEP135 1
- CEP290 1
- CEP41 1
- CGNL1 1
- CHD1 2
- CHD3 1
- CHMP1A 1
- CHRM3 1
- CHRNA7 1
- CHRNB3 1
- CIB2 1
- CLASP1 1
- CLN8 1
- CLTCL1 1
- CNGB3 1
- CNKSR2 1
- CNR1 1
- CNTN3 1
- CNTN5 1
- CNTN6 1
- CNTNAP3 1
- CNTNAP4 1
- CNTNAP5 1
- COL28A1 1
- CPEB4 1
- CPT2 1
- CSMD1 1
- CSNK1E 1
- CTCF 1
- CTNNA3 1
- CTNNB1 1
- CTTNBP2 1
- CUL7 1
- CUX2 1
- CX3CR1 1
- CYFIP1 1
- CYLC2 1
- CYP11B1 1
- DAGLA 1
- DAPP1 1
- DDC 2
- DDX53 1
- DENR 1
- DIP2A 1
- DISC1 1
- DIXDC1 1
- DLG1 1
- DLGAP1 1
- DLGAP2 1
- DLGAP3 1
- DLX2 1
- DLX6 1
- DMXL2 1
- DNAH10 1
- DNAH17 1
- DNAH3 1
- DNER 1
- DNMT3A 1
- DOCK1 1
- DOCK4 1
- DOCK8 1
- DPP10 1
- DPP4 1
- DPP6 1
- DPYD 1
- DPYSL2 1
- DPYSL3 1
- DRD1 1
- DRD2 1
- DRD3 1
- DST 1
- DUSP15 1
- DVL3 1
- DYDC1 1
- DYDC2 1
- DYNC1H1 1
- EFR3A 1
- EHMT1 1
- EIF3G 1
- EIF4E 1
- ELAVL2 1
- ELAVL3 1
- ELOVL2 1
- ELP4 1
- EMSY 1
- EN2 1
- EP300 1
- EP400 1
- EPC2 1
- EPHB2 1
- EPPK1 1
- ERG 1
- ERMN 1
- ESR2 1
- ESRRB 1
- ETFB 1
- EXOC3 1
- EXOC5 1
- EXOC6 1
- EXOC6B 1
- EXT1 1
- FABP5 1
- FAM47A 1
- FAM92B 2
- FAN1 1
- FAT1 1
- FBN1 1
- FBXO11 1
- FBXO33 1
- FBXO40 1
- FCRL6 1
- FEZF2 1
- FGA 1
- FHIT 1
- FOXP2 1
- FRK 1
- GABBR2 1
- GABRA4 1
- GABRG3 1
- GALNT13 1
- GALNT14 1
- GALNT8 1
- GAS2 1
- GDA 1
- GGNBP2 1
- GIGYF1 1
- GLIS1 1
- GLO1 1
- GLRA2 1
- GNAS 1
- GNB1L 1
- GPC4 1
- GPC6 1
- GPD2 1
- GPHN 1
- GPR37 1
- GPR85 1
- GPX1 1
- GRID1 1
- GRID2 1
- GRID2IP 1
- GRIK2 1
- GRIK3 1
- GRIK4 1
- GRIK5 1
- GRIN1 1
- GRIN2A 1
- GRM5 1
- GRM7 1
- GSTM1 1
- GTF2I 1
- GUCY1A2 1
- HDLBP 1
- HECTD4 1
- HECW2 1
- HIVEP3 1
- HLA-A 1
- HLA-B 1
- HLA-DRB1 1
- HLA-G 1
- HMGN1 1
- HNRNPH2 1
- HNRNPU 1
- HOMER1 1
- HRAS 1
- HS3ST5 1
- HSD11B1 1
- HTR1B 1
- HTR3A 1
- HTR3C 1
- HYDIN 1
- ICA1 1
- IL1R2 1
- IL1RAPL1 1
- IL1RAPL2 1
- IMMP2L 1
- INPP1 1
- IQGAP3 1
- IQSEC2 1
- ITGB3 1
- ITPR1 1
- JARID2 1
- JMJD1C 1
- KANK1 1
- KAT6A 1
- KATNAL1 1
- KCND2 1
- KCND3 1
- KCNJ10 1
- KCNJ15 1
- KCNK7 1
- KCNMA1 2
- KCNQ2 1
- KCNQ3 1
- KCTD13 1
- KDM4B 1
- KDM4C 1
- KDM5C 1
- KDM6B 1
- KHDRBS2 1
- KIAA1586 1
- KIF13B 1
- KIF14 1
- KIF5C 1
- KIRREL3 1
- KLF16 1
- KMT2E 1
- KRR1 1
- KRT26 1
- LAMA1 1
- LAMB1 1
- LEP 1
- LILRB2 1
- LIN7B 1
- LMX1B 1
- LRBA 1
- LRFN2 1
- LRFN5 1
- LRP2 1
- LRRC1 1
- LRRC4 1
- LZTR1 1
- LZTS2 1
- MACROD2 1
- MAOA 1
- MAOB 1
- MAPK3 1
- MARK1 1
- MBD1 1
- MBD3 1
- MBD4 1
- MBD5 1
- MBD6 1
- MCM4 1
- MCM6 1
- MCPH1 1
- MDGA2 1
- MEF2C 1
- MEGF10 1
- MEGF11 1
- MFRP 1
- MIB1 1
- MIR137 2
- MKL2 1
- MNT 1
- MPP6 2
- MSANTD2 1
- MSR1 1
- MTF1 1
- MTHFR 1
- MTOR 1
- MUC12 1
- MUC4 1
- MYH10 1
- MYH4 1
- MYO16 1
- MYO1E 1
- MYO5A 1
- MYO5C 1
- MYO9B 1
- NAALADL2 1
- NACC1 1
- NAV2 1
- NBEA 1
- NCKAP5 1
- NCOR1 1
- NDUFA5 1
- NEO1 1
- NEXMIF 1
- NFIA 1
- NFIB 1
- NINL 1
- NIPA1 1
- NIPA2 1
- NLGN1 1
- NLGN2 1
- NLGN4X 1
- NLGN4Y 1
- NOTCH2NL 2
- NPAS2 1
- NR1D1 1
- NR2F1 1
- NR3C2 1
- NR4A2 1
- NRCAM 1
- NRP2 1
- NRXN2 1
- NRXN3 1
- NSMCE3 1
- NTNG1 1
- NTRK1 1
- NTRK3 1
- NUAK1 1
- NUDCD2 1
- NUP133 1
- NXPH1 1
- ODF3L2 1
- OFD1 1
- OPHN1 1
- OR1C1 1
- OR2M4 1
- OR2T10 1
- OR52M1 1
- OTUD7A 1
- OTX1 1
- OXT 1
- OXTR 1
- P2RX5 1
- P4HA2 1
- PAH 1
- PAK2 1
- PARD3B 1
- PATJ 1
- PAX5 1
- PCDH10 1
- PCDH11X 1
- PCDH15 1
- PCDH9 1
- PCDHA1 1
- PCDHA10 1
- PCDHA11 1
- PCDHA12 1
- PCDHA13 1
- PCDHA2 1
- PCDHA3 1
- PCDHA4 1
- PCDHA5 1
- PCDHA6 1
- PCDHA7 1
- PCDHA8 1
- PCDHA9 1
- PCDHAC1 1
- PCDHAC2 1
- PDCD1 1
- PDE1C 1
- PER1 1
- PER2 1
- PEX7 1
- PHB 1
- PHF2 1
- PHIP 1
- PHRF1 1
- PIK3CG 1
- PITX1 1
- PLAUR 1
- PLCB1 1
- PLN 1
- PLXNA3 1
- PLXNA4 1
- PLXNB1 1
- PNPLA7 1
- POLA2 1
- POMT1 1
- PON1 1
- POT1 1
- PPFIA1 1
- PPM1D 1
- PPP1R1B 1
- PPP2R1B 1
- PPP2R5D 1
- PREX1 1
- PRICKLE1 1
- PRICKLE2 1
- PRKCB 1
- PRKDC 1
- PRKN 1
- PRODH 1
- PRPF39 1
- PRUNE2 1
- PSD3 1
- PTBP2 1
- PTGS2 1
- PTK7 1
- PTPN11 1
- PTPRB 1
- PTPRC 1
- PTPRT 1
- PXDN 1
- PYHIN1 1
- QRICH1 1
- RAB11FIP5 1
- RAB2A 1
- RAB43 1
- RAD21L1 1
- RAI1 1
- RAPGEF4 1
- RASSF5 1
- RBFOX1 1
- RBM27 1
- REEP3 1
- RERE 1
- RFX3 1
- RGS7 1
- RHOXF1 1
- RIMS3 1
- RIT2 1
- RNF135 1
- RNF38 1
- ROBO2 1
- RPL10 1
- RPS6KA2 1
- RPS6KA3 1
- SAE1 1
- SAMD11 1
- SASH1 1
- SATB2 1
- SBF1 1
- SCFD2 1
- SCN1A 1
- SCN4A 1
- SCN8A 1
- SCP2 1
- SDC2 1
- SEMA5A 1
- SERPINE1 1
- SETBP1 1
- SETD1B 1
- SETD2 1
- SETDB1 1
- SETDB2 1
- SEZ6L2 1
- SGSM3 1
- SHANK1 1
- SHOX 1
- SIN3A 1
- SLC12A5 1
- SLC1A1 1
- SLC22A15 1
- SLC22A9 1
- SLC24A2 1
- SLC25A12 1
- SLC25A27 1
- SLC25A39 1
- SLC27A4 1
- SLC29A4 1
- SLC35B1 1
- SLC38A10 1
- SLC4A10 1
- SLC6A3 1
- SLC6A4 1
- SLC6A8 1
- SLC7A3 1
- SLC7A5 1
- SLC7A7 1
- SLC9A9 1
- SLCO1B3 1
- SLITRK5 1
- SMAD4 1
- SMARCA4 1
- SMC3 1
- SMG6 1
- SNAP25 1
- SND1 1
- SNTG2 1
- SOD1 1
- SPARCL1 1
- SPP2 1
- SRGAP3 1
- SSPO 1
- SSRP1 1
- ST7 1
- ST8SIA2 1
- STK39 1
- STX1A 1
- STXBP1 1
- STXBP5 1
- STYK1 1
- SYAP1 1
- SYN1 1
- SYN2 1
- SYNCRIP 1
- SYNE1 1
- SYNJ1 1
- SYT17 1
- TAF1C 1
- TAF6 1
- TANC2 2
- TBC1D31 1
- TBC1D5 1
- TBL1X 1
- TBX1 1
- TCF4 1
- TCF7L2 1
- TDO2 1
- TECTA 1
- TERB2 1
- TERF2 1
- TET2 1
- THBS1 1
- THRA 1
- TLK2 1
- TM4SF19 1
- TMLHE 1
- TMPRSS9 2
- TOP3B 1
- TPO 1
- TRAF7 1
- TRAPPC9 1
- TRIM33 1
- TRPC6 1
- TRPM1 1
- TSC2 1
- TSHZ3 1
- TSPAN17 1
- TSPAN7 1
- TSPOAP1 1
- TTC25 2
- TTN 1
- TUBGCP5 1
- UBE2H 1
- UBE3A 1
- UBE3C 1
- UBR5 1
- UNC13A 1
- UNC79 1
- UNC80 1
- USH2A 1
- USP45 1
- USP9Y 1
- VASH1 1
- VDR 1
- VIL1 1
- VSIG4 1
- WNK3 1
- WNT1 1
- WWOX 1
- XPO1 1
- YEATS2 1
- YTHDC2 1
- YWHAE 1
- ZBTB16 1
- ZBTB20 1
- ZC3H4 1
- ZMYND11 1
- ZNF18 1
- ZNF385B 1
- ZNF462 1
- ZNF517 1
- ZNF548 1
- ZNF559 1
- ZNF626 1
- ZNF713 1
- ZNF774 1
- ZNF804A 1
- ZNF827 1
- ZWILCH 1
- RIMS2 1
STRs in panel
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Regions in panel
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This Panel is marked as Retired
Autism
Gene: CHD2 Green List (high evidence)
CHD2 (chromodomain helicase DNA binding protein 2)
EnsemblGeneIds (GRCh38): ENSG00000173575
EnsemblGeneIds (GRCh37): ENSG00000173575
OMIM: 602119, Gene2Phenotype
CHD2 is in 4 panels
EnsemblGeneIds (GRCh38): ENSG00000173575
EnsemblGeneIds (GRCh37): ENSG00000173575
OMIM: 602119, Gene2Phenotype
CHD2 is in 4 panels
1 review
Louise Daugherty (Genomics England Curator)
I don't know
Each gene in the SFARI Human Gene module has a dedicated entry summary page, see here for more info on this gene: https://gene.sfari.org/database/human-gene/CHD2 Gene indicated by SFARI as predisposition to autism in the context of a syndromic disorder. The number of ASD-specific reports that implicate a gene compared to the total number of relevant non-ASD-specific reports that mention the gene. Autism reports / Total reports : 13 / 29Created: 1 Apr 2019, 11:26 a.m.
Created: 1 Apr 2019, 11:26 a.m.
Panel version: 0.11
Panel version: 0.11
Details
- Sources
-
- Expert Review Green
- SFARI
- Phenotypes
-
- Tourette syndrome
- EP, ASD, EPS, DD/NDD, ADHD, ID
- OMIM
- 602119
- Clinvar variants
- Variants in CHD2
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
1 Apr 2019, Gel status: 4
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene CHD2 were changed from 26677509; 22495311; 23020937 to 20212079; 26185613; 23042784; 24267887; 26166478; 25989142; 24090431; 24581740; 26167905; 23999528; 25294932
1 Apr 2019, Gel status: 4
Set Phenotypes
Louise Daugherty (Genomics England Curator)Added phenotypes Tourette syndrome; EP, ASD, EPS, DD/NDD, ADHD, ID for gene: CHD2
29 Mar 2019, Gel status: 4
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene CHD2 were changed from to 26677509; 22495311; 23020937
29 Mar 2019, Gel status: 3
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to CHD2. Rating Changed from Red List (low evidence) to Green List (high evidence)
29 Mar 2019, Gel status: 1
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: CHD2 was added gene: CHD2 was added to Autism. Sources: SFARI Mode of inheritance for gene: CHD2 was set to