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- RAB39B 2
- RELN 1
- SCN2A 1
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- SHANK3 1
- SYNGAP1 1
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- TRIP12 1
- ZNF292 2
- ANKRD11 1
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- SETD2 1
- SETDB1 1
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- SEZ6L2 1
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- SHANK1 1
- SHOX 1
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- SLC22A15 1
- SLC22A9 1
- SLC24A2 1
- SLC25A12 1
- SLC25A27 1
- SLC25A39 1
- SLC27A4 1
- SLC29A4 1
- SLC35B1 1
- SLC38A10 1
- SLC4A10 1
- SLC6A3 1
- SLC6A4 1
- SLC6A8 1
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- SLCO1B3 1
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- TPO 1
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- TRAPPC9 1
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- UBE3C 1
- UBR5 1
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- UNC80 1
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- YTHDC2 1
- YWHAE 1
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- ZBTB20 1
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- ZNF774 1
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- ZNF827 1
- ZWILCH 1
- RIMS2 1
Autism
Gene: RAB39B Green List (high evidence)EnsemblGeneIds (GRCh38): ENSG00000155961
EnsemblGeneIds (GRCh37): ENSG00000155961
OMIM: 300774, Gene2Phenotype
RAB39B is in 8 panels
2 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
Green List (high evidence)
Comment on classification: This gene should be rated green, as there are sufficient cases (>3 unrelated cases) were identified with RAB39B variants and implicated in autism. In addition, there is ample of functional evidence available including studies from mouse knockout models.
PMID:20159109 reported two out of four brothers with RAB39B variant from family X (D-23) and one patient from MRX72 family were reported with autism spectrum disorder (ASD), while all patients were mentally retarded.
PMID:29152164 reported two males from the same family identified with RAB39B variant and diagnosed with macrocephaly, intellectual disability (ID) and ASD, while their female sibling with the same mutation presented with ID and a broad autism phenotype.
PMID:32873259 report a seven year old boy with a RAB39B variant (c.436_447del) and a concurrent heterozygous NF1 variant (c.6579+2T>C) was presented with multiple café-au-lait macules (CALMs) and freckling, severe macrocephaly, peculiar facial gestalt, severe ID with absent speech, epilepsy, autistic traits, self-harming, and aggressiveness.
PMID:34761259 reports a novel RAB39B nonstop variant (Xq28; c.640 T > C; p.(*214Glnext*21)) in a family where two brothers were diagnosed with ASD, severe (level 3) ID, hypotonia, language impairment and poor motor coordination.Created: 10 Feb 2023, 4:28 p.m. | Last Modified: 10 Feb 2023, 4:35 p.m.
Panel Version: 0.28
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Intellectual developmental disorder, X-linked 72, OMIM:300271
Publications
Last Modified: 10 Feb 2023, 4:35 p.m.
Panel version: 0.26
Louise Daugherty (Genomics England Curator)
I don't know
Each gene in the SFARI Human Gene module has a dedicated entry summary page, see here for more info on this gene: https://gene.sfari.org/database/human-gene/RAB39BCreated: 1 Apr 2019, 11:26 a.m.
Panel version: 0.11
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Green
- SFARI
- Phenotypes
-
- Intellectual developmental disorder, X-linked 72, OMIM:300271
- OMIM
- 300774
- Clinvar variants
- Variants in RAB39B
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: RAB39B were changed from to Intellectual developmental disorder, X-linked 72, OMIM:300271
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: RAB39B was changed from to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: rab39b has been classified as Green List (High Evidence).
Removed Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q1_23_promote_green was removed from gene: RAB39B.
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: RAB39B were set to
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: rab39b has been classified as Amber List (Moderate Evidence).
Added Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q1_23_promote_green tag was added to gene: RAB39B.
Added New Source
Louise Daugherty (Genomics England Curator)Source Expert Review Red was added to RAB39B.
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: RAB39B was added gene: RAB39B was added to Autism. Sources: SFARI Mode of inheritance for gene: RAB39B was set to