Rare multisystem ciliopathy disorders
Gene: IFT52EnsemblGeneIds (GRCh38): ENSG00000101052
EnsemblGeneIds (GRCh37): ENSG00000101052
OMIM: 617094, Gene2Phenotype
IFT52 is in 9 panels
3 reviews
Rebecca Foulger (Genomics England curator)
PMID:26880018 (2016, included in Alice's review) examined a child from a consanguineous Indian family who had skeletal dysplasia and additional phenotypes including short hands and feet and postaxial polydactyly. WES revealed a nonsense variant p.R142X in IFT52. The proband's unaffected consanguineous parents were heterozygous for the mutation.
PMID:27466190 (Zhang 2016, from Zornitza's review) report a non-consanguineous family with two fetuses affected by MIM:617102 without polydactyly, and compound heterozygous variant in IFT52. The authors also present functional data for ciliopathies.
PMID:30242358 (2018, Chen et al) provide a third case: They identified a homozygous missense variation in IFT52, c.556A>G (p.T186A), carried by a patient with syndromic ciliopathy, presenting mild SRTD (skeletal ciliopathy) and Liber congenital amaurosis. The variant was absent in both unaffected siblings. This report expands ocular phenotypes of IFT52 mutation-caused ciliopathy to include retinal ciliopathy, and also provides functional information for the role of IFT52 in primary ciliary function.Created: 1 Nov 2018, 2:44 p.m.
Comment on list classification: Updated rating from Red to Green: The 2018 paper (PMID:30242358) takes the number of literature cases of IFT52 homozgyous variants causative for ciliopathy to THREE. Plus functional evidence for role of IFT52 in cilial function (PMIDs:27466190 and 30242358).Created: 1 Nov 2018, 2:36 p.m.
Zornitza Stark (Australian Genomics)
Note additional case reported in this paper, including functional data.Created: 4 Aug 2018, 8:31 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Short-rib polydactyly syndrome
Publications
Variants in this GENE are reported as part of current diagnostic practice
Alice Gardham (Genomics England)
Only reported in two individual casesCreated: 25 Jan 2017, 1:05 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Short-rib thoracic dysplasia 16 with or without polydactyly 617102
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Other
- Phenotypes
-
- Short-rib thoracic dysplasia 16 with or without polydactyly, OMIM:617102
- Short-rib thoracic dysplasia 16 with or without polydactyly, MONDO:0014915
- OMIM
- 617094
- Clinvar variants
- Variants in IFT52
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: IFT52 were changed from Short-rib thoracic dysplasia 16 with or without polydactyly, 617102 to Short-rib thoracic dysplasia 16 with or without polydactyly, OMIM:617102; Short-rib thoracic dysplasia 16 with or without polydactyly, MONDO:0014915
Set publications
Rebecca Foulger (Genomics England curator)Publications for gene: IFT52 were set to 26880018
Entity classified by Genomics England curator
Rebecca Foulger (Genomics England curator)Gene: ift52 has been classified as Green List (High Evidence).
panel promoted to version 1
Alice Gardham (Genomics England)Promoted to version 1 by Alice Gardham on 26th January 2017
Gene classified by Genomics England curator
Alice Gardham (Genomics England)This gene has been classified as Red List (Low Evidence).
Set Phenotypes
Alice Gardham (Genomics England)Phenotypes for IFT52 were set to Short-rib thoracic dysplasia 16 with or without polydactyly, 617102
Set publications
Alice Gardham (Genomics England)Publications for IFT52 were set to 26880018
Set Mode of Inheritance
Alice Gardham (Genomics England)Mode of inheritance for IFT52 was changed to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)IFT52 was added to Rare multisystem ciliopathy disorderspanel. Sources: Other
Created
Ellen McDonagh (Genomics England Curator)IFT52 was created by ellenmcdonagh