Pulmonary arterial hypertension
Gene: KCNK3EnsemblGeneIds (GRCh38): ENSG00000171303
EnsemblGeneIds (GRCh37): ENSG00000171303
OMIM: 603220, Gene2Phenotype
KCNK3 is in 6 panels
3 reviews
Ellen McDonagh (Genomics England Curator)
PMID: 28388887 pathogenic variant reported in an Asian patient with pulmonary arterial hypertension.Created: 14 Aug 2017, 1:54 p.m.
Publications
Louise Daugherty (Genomics England Curator)
Initial gene list and info collated by Ian Berry Leeds Genetics Laboratory November 2018 on behalf of the GMS Respiratory specialist test group. Gene Symbol submitted: KCNK3; Suggested initial gene rating: Green; Evidence for inclusion: OMIM PPH gene; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none givenCreated: 6 Dec 2018, 2:01 p.m.
Comment on publications: Added PMID 28388887 (2017)- first replicative finding of channelopathy in an Asian populationCreated: 19 Jun 2017, 2:17 p.m.
Comment on publications: added new paper-PMID: 27884767 (2017) new case for a likely pathogenic KCNK3 mutation c.565G>A giving rise to IPAH, this variant has not been reported perviously by in Ma et. al (2014). Also PMID:28388887 (2017) reports the first case of a patient carrying a pathogenic variant of KCNK3 from an Asian population.Created: 19 Jun 2017, 2:16 p.m.
Comment on list classification: Changed status to Green as there are more than three unrelated cases in the literature to support association to PAHCreated: 19 Jun 2017, 2:14 p.m.
PMID: 23883380 (2013), three unlreated cases where KCNK3 variants caused Primary pulmonary hypertension. In the GeneReview for PAH PMID: 20301658 notes that most heritable PAH (75%) is caused by a pathogenic variant in BMPR2; pathogenic variants in other genes (i.e., ACVRL1, KCNK3, CAV1, SMAD9, BMPR1B,) are considerably less common (1-3%).Created: 19 Jun 2017, 1:40 p.m.
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- NHS GMS
- Expert list
- Expert Review Green
- Literature
- Phenotypes
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- Pulmonary hypertension, primary, 4, OMIM:615344
- OMIM
- 603220
- Clinvar variants
- Variants in KCNK3
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: KCNK3 were changed from Idiopathic pulmonary arterial hypertension; IPAH; Heritable pulmonary arterial hypertension; HPAH; Pulmonary arterial hypertension; Pulmonary hypertension, primary, 4, 615344 to Pulmonary hypertension, primary, 4, OMIM:615344
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to KCNK3. Rating Changed from Green List (high evidence) to Green List (high evidence)
Set publications
Ellen McDonagh (Genomics England Curator)Publications for KCNK3 were set to 20301658; 24951762; 24355637; 23883380; 26387786; 27884767;28388887
panel promoted to version 1
Louise Daugherty (Genomics England Curator)Panel reviews were assessed, and panel was revised according to reviews and further in-house curation.
Upload gene information
Louise Daugherty (Genomics England Curator)KCNK3 was added to Pulmonary arterial hypertensionpanel. Sources: Expert list
Set publications
Louise Daugherty (Genomics England Curator)Publications for KCNK3 were set to 20301658; 24951762; 24355637; 23883380; 26387786; 27884767
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for KCNK3 were set to 20301658; 24951762; 24355637; 23883380; 26387786;27884767
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for KCNK3 were set to Idiopathic pulmonary arterial hypertension; IPAH; Heritable pulmonary arterial hypertension; HPAH; Pulmonary arterial hypertension; Pulmonary hypertension, primary, 4, 615344
Set publications
Louise Daugherty (Genomics England Curator)Publications for KCNK3 were set to 20301658; 24951762; 24355637; 23883380;26387786
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for KCNK3 were set to diopathic pulmonary arterial hypertension; IPAH; Heritable pulmonary arterial hypertension; HPAH; Pulmonary arterial hypertension;Pulmonary hypertension, primary, 4, 615344
Added New Source
Louise Daugherty (Genomics England Curator)KCNK3 was added to Pulmonary arterial hypertensionpanel. Sources: Literature
Created
Louise Daugherty (Genomics England Curator)KCNK3 was created by LouiseD