Silver Russell syndrome
Gene: CDKN1CEnsemblGeneIds (GRCh38): ENSG00000129757
EnsemblGeneIds (GRCh37): ENSG00000129757
OMIM: 600856, Gene2Phenotype
CDKN1C is in 20 panels
4 reviews
Rebecca Foulger (Genomics England curator)
Following discussion with members of the Endocrine Specialist Group at the Webex call on 23.05.19, it was agreed that CDKN1C should be included on the panel. Therefore kept rating as Green.Created: 30 May 2019, 9:34 a.m.
Ivone Leong (Genomics England Curator)
This gene is part of a consensus list for SRS/SRS-like testing provided by Frederic Brioude. Suggested initial gene rating: Green; Evidence for inclusion: none given; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none given; Phenotypes: SRS/BWS.Created: 14 May 2019, 1:25 p.m.
Phenotypes
SRS/BWS
Sarah Leigh (Genomics England Curator)
Comment on list classification: This gene is being demoted to red as pathogenicity is caused by changes to methylation of this geneCreated: 8 Jun 2016, 2:27 p.m.
Comment when marking as ready: Associated with phenotype (614732) in OMIM, not G2P. Found in 3/4 sources. One reviewer recommends Green. At least 5 variants reported in the literature.Created: 8 Jun 2016, 12:26 p.m.
Comment on mode of pathogenicity: GOF variants result in increased stability which could explain an increased activity of CDKN1CCreated: 8 Jun 2016, 12:22 p.m.
Deborah Mackay (university of southampton)
gain of function mutations in PCNA domain associated with IMAGe and SRSCreated: 7 Jun 2016, 2:30 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, paternally imprinted (maternal allele expressed)
Phenotypes
SRS; IMAGe
Publications
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, paternally imprinted (maternal allele expressed)
- Sources
-
- Expert list
- Expert Review Red
- Emory Genetics Laboratory
- Radboud University Medical Center, Nijmegen
- UKGTN
- Phenotypes
-
- Beckwith-Wiedemann syndrome, 130650
- IMAGE syndrome, 614732
- OMIM
- 600856
- Clinvar variants
- Variants in CDKN1C
- Penetrance
- Complete
- Publications
- Mode of Pathogenicity
- Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
- Panels with this gene
-
- DDG2P
- Sarcoma cancer susceptibility
- Differences in sex development
- Clefting
- Monogenic short stature
- Osteogenesis imperfecta
- Beckwith-Wiedemann syndrome (BWS) and other congenital overgrowth disorders
- Silver Russell syndrome
- Familial rhabdomyosarcoma
- Wilms tumour with features suggestive of predisposition
- Congenital adrenal hypoplasia
- Segmental overgrowth disorders - Deep sequencing
- Sarcoma susceptibility
- Childhood solid tumours
- IUGR and IGF abnormalities
- Skeletal dysplasia
- Fetal anomalies
- Beckwith-Wiedemann syndrome
- Childhood solid tumours cancer susceptibility
- Intellectual disability
History Filter Activity
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set mode of pathogenicity
Sarah Leigh (Genomics England Curator)Mode of pathogenicity for CDKN1C was changed to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Set publications
Sarah Leigh (Genomics England Curator)Publications for CDKN1C were set to 8841187; 20503313; 10424811; 24065356; 22634751
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for CDKN1C were set to Beckwith-Wiedemann syndrome, 130650; IMAGE syndrome, 614732
Added New Source
Sarah Leigh (Genomics England Curator)CDKN1C was added to Silver Russell syndromepanel. Source: Emory Genetics Laboratory
Added New Source
Sarah Leigh (Genomics England Curator)CDKN1C was added to Silver Russell syndromepanel. Source: Radboud University Medical Center, Nijmegen
Created
Sarah Leigh (Genomics England Curator)CDKN1C was created by sleigh
Added New Source
Sarah Leigh (Genomics England Curator)CDKN1C was added to Silver Russell syndromepanel. Sources: UKGTN