Bilateral congenital or childhood onset cataracts
Gene: LIM2EnsemblGeneIds (GRCh38): ENSG00000105370
EnsemblGeneIds (GRCh37): ENSG00000105370
OMIM: 154045, Gene2Phenotype
LIM2 is in 2 panels
5 reviews
Sarah Leigh (Genomics England Curator)
The mode of inheritance of this gene has been updated to BOTH monoallelic and biallelic, autosomal or pseudoautosomal following NHS Genomic Medicine Service approval.Created: 26 Sep 2024, 12:44 p.m. | Last Modified: 26 Sep 2024, 12:44 p.m.
Panel Version: 5.4
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Arina Puzriakova (Genomics England Curator)
Comment on mode of inheritance: The MOI should be updated from 'biallelic' to 'both mono- and biallelic' at the next GMS panel update. At least 9 unrelated multigenerational families have been identified with cataracts due to a recurrent heterozygous LIM2 p.R130C variant (PMIDs: 32202185; 33078099; 33708862; 33923544; 35736209). These families come from different ancestries (British, Chinese, Spanish, Japanese) and haplotype analysis in families from shared ancestries has suggested the variant likely arose due to independent founder events in each family. The evidence therefore supports this MOI being included in future analyses.Created: 15 Apr 2024, 4:01 p.m. | Last Modified: 15 Apr 2024, 4:04 p.m.
Panel Version: 4.12
Ellen Thomas (Genomics England Curator)
Comment on list classification: Two families plus several mouse models.Created: 7 Jun 2016, 1:08 p.m.
Sarah Waller (Manchester Centre for Genomic Medicine)
Seen in 2 unrelated familiesCreated: 2 Jun 2016, 1:20 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Cortical Pulverulent Cataract; Cataract 19, 615277
Publications
- Ponnam et al (2008) Mol Vis 14:1204-1208
- Pras et al (2002) Am J Hum genet 70:1363-7
Variants in this GENE are reported as part of current diagnostic practice
Ellen McDonagh (Genomics England Curator)
Not on the Manchester congenital cataracts gene panel, and not found associated with a phenotype in G2P. Associated with Cataract 19, multiple types in OMIM, with 2 different variants reported in two different unrelated families.Created: 25 Apr 2016, 9:37 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Cataract 19, multiple types
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- Radboud University Medical Center, Nijmegen
- Illumina TruGenome Clinical Sequencing Services
- Phenotypes
-
- Cataract 19, multiple types, OMIM:615277
- Tags
- OMIM
- 154045
- Clinvar variants
- Variants in LIM2
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Sarah Leigh (Genomics England Curator)Tag Q2_24_MOI was removed from gene: LIM2.
Added New Source, Set mode of inheritance
Sarah Leigh (Genomics England Curator)Source NHS GMS was added to LIM2. Mode of inheritance for gene LIM2 was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Added Tag, Added Tag
Arina Puzriakova (Genomics England Curator)Tag recurrent-variant tag was added to gene: LIM2. Tag Q2_24_MOI tag was added to gene: LIM2.
Set mode of inheritance
Arina Puzriakova (Genomics England Curator)Mode of inheritance for gene: LIM2 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Set publications
Arina Puzriakova (Genomics England Curator)Publications for gene: LIM2 were set to Ponnam et al (2008) Mol Vis 14:1204-1208; Pras et al (2002) Am J Hum genet 70:1363-7
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: LIM2 were changed from Cortical Pulverulent Cataract; Cataract 19, 615277 to Cataract 19, multiple types, OMIM:615277
Gene classified by Genomics England curator
Ellen Thomas (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for LIM2 were set to Ponnam et al (2008) Mol Vis 14:1204-1208; Pras et al (2002) Am J Hum genet 70:1363-7
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Added New Source
GEL ()LIM2 was added to Cataractspanel. Sources: Radboud University Medical Center, Nijmegen
Added New Source
GEL ()LIM2 was added to Cataractspanel. Sources: Illumina TruGenome Clinical Sequencing Services