Intellectual disability update Jan 2018

Gene: GBA2

Amber List (moderate evidence)

GBA2 (glucosylceramidase beta 2)
EnsemblGeneIds (GRCh38): ENSG00000070610
EnsemblGeneIds (GRCh37): ENSG00000070610
OMIM: 609471, Gene2Phenotype
GBA2 is in 13 panels

2 reviews

Helen Brittain (Genomics England Curator)

Comment when marking as ready: Phenotype not a clear fit for this panel on the current evidence.
Created: 6 Mar 2018, 4:52 p.m.
Comment on list classification: I recognise that there are cases with intellectual impairment reported, however all cases reported to date have initially presented with gait disturbance or spasticity in the 1st-2nd decades. Therefore on the current evidence, the best place to capture phenotypes associated with this gene would be the HSP panel. If evidence emerges of a primary ID phenotype (rather than more complex neurological decline) then this can be re-considered.
Created: 6 Mar 2018, 4:51 p.m.
Comment on list classification: I recognise that there are cases with intellectual impairment reported, however all cases reported to date have initially presented with gait disturbance or spasticity in the 1st-2nd decades. Therefore on the current evidence, the best place to capture phenotypes associated with this gene would be the HSP panel. If evidence emerges of a primary ID phenotype (rather than more complex neurological decline) then this can be re-considered.
Created: 6 Mar 2018, 4:51 p.m.

Sarah Leigh (Genomics England Curator)

Comment on phenotypes: Mild to moderate mental retardation reported in some patients and overall cognitive decline generally reported according PMID 23332916
Created: 5 Mar 2018, 11:43 a.m.
Comment when marking as ready: Spastic paraplegia 46, autosomal recessive 614409
Created: 5 Mar 2018, 11:40 a.m.
Associated with phenotype in OMIM and as a confirmed G2P association for Spastic paraplegia 46, autosomal recessive 614409, however, intellectual disability is not a common feature of this phenotype.
Based on report of a variant in two unrelated cases of Marinesco-Sjögren-Like Syndrome (PMID 28052128) in addition to at least three cases of Spastic paraplegia 46, autosomal recessive 614409 that display intellectual disability (PMIDs 23332916;23332917;24252062)
Created: 5 Mar 2018, 11:17 a.m.

History Filter Activity

6 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

6 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

6 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

5 Mar 2018, Gel status: 3

Set publications

Sarah Leigh (Genomics England Curator)

Publications for GBA2 were set to 23332916; 23332917; 24252062; 28052128

5 Mar 2018, Gel status: 3

Set publications

Sarah Leigh (Genomics England Curator)

Publications for GBA2 were set to 23332916; 23332917; 24252062; 28052128

5 Mar 2018, Gel status: 3

Gene classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

5 Mar 2018, Gel status: 1

Set publications

Sarah Leigh (Genomics England Curator)

Publications for GBA2 were set to 23332916; 23332917; 28052128

5 Mar 2018, Gel status: 1

Set publications

Sarah Leigh (Genomics England Curator)

Publications for GBA2 were set to 23332916; 23332917

5 Mar 2018, Gel status: 1

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for GBA2 were set to Spastic paraplegia 46, autosomal recessive 614409

5 Mar 2018, Gel status: 1

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for GBA2 were set to Spastic paraplegia 46, autosomal recessive 614409

5 Mar 2018, Gel status: 1

Gene classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

5 Mar 2018, Gel status: 1

Set mode of inheritance

Sarah Leigh (Genomics England Curator)

Mode of inheritance for GBA2 was changed from to BIALLELIC, autosomal or pseudoautosomal

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

GBA2 was added to Intellectual disability update Jan 2018 panel. Sources: Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

GBA2 was created by Ellen McDonagh