Intellectual disability update Jan 2018
Gene: GBA2EnsemblGeneIds (GRCh38): ENSG00000070610
EnsemblGeneIds (GRCh37): ENSG00000070610
OMIM: 609471, Gene2Phenotype
GBA2 is in 13 panels
2 reviews
Helen Brittain (Genomics England Curator)
Comment when marking as ready: Phenotype not a clear fit for this panel on the current evidence.Created: 6 Mar 2018, 4:52 p.m.
Comment on list classification: I recognise that there are cases with intellectual impairment reported, however all cases reported to date have initially presented with gait disturbance or spasticity in the 1st-2nd decades. Therefore on the current evidence, the best place to capture phenotypes associated with this gene would be the HSP panel. If evidence emerges of a primary ID phenotype (rather than more complex neurological decline) then this can be re-considered.Created: 6 Mar 2018, 4:51 p.m.
Comment on list classification: I recognise that there are cases with intellectual impairment reported, however all cases reported to date have initially presented with gait disturbance or spasticity in the 1st-2nd decades. Therefore on the current evidence, the best place to capture phenotypes associated with this gene would be the HSP panel. If evidence emerges of a primary ID phenotype (rather than more complex neurological decline) then this can be re-considered.Created: 6 Mar 2018, 4:51 p.m.
Sarah Leigh (Genomics England Curator)
Comment on phenotypes: Mild to moderate mental retardation reported in some patients and overall cognitive decline generally reported according PMID 23332916Created: 5 Mar 2018, 11:43 a.m.
Comment when marking as ready: Spastic paraplegia 46, autosomal recessive 614409Created: 5 Mar 2018, 11:40 a.m.
Associated with phenotype in OMIM and as a confirmed G2P association for Spastic paraplegia 46, autosomal recessive 614409, however, intellectual disability is not a common feature of this phenotype.
Based on report of a variant in two unrelated cases of Marinesco-Sjögren-Like Syndrome (PMID 28052128) in addition to at least three cases of Spastic paraplegia 46, autosomal recessive 614409 that display intellectual disability (PMIDs 23332916;23332917;24252062)Created: 5 Mar 2018, 11:17 a.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Phenotypes
-
- Spastic paraplegia 46, autosomal recessive 614409
- OMIM
- 609471
- Clinvar variants
- Variants in GBA2
- Penetrance
- None
- Publications
- Panels with this gene
-
- Hereditary ataxia with onset in adulthood
- Intellectual disability
- Hereditary spastic paraplegia
- Hereditary neuropathy or pain disorder
- Adult onset neurodegenerative disorder
- Hereditary ataxia
- Fetal anomalies
- DDG2P
- Adult onset hereditary spastic paraplegia
- Ataxia and cerebellar anomalies - narrow panel
- Hereditary neuropathy
- Childhood onset hereditary spastic paraplegia
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for GBA2 were set to 23332916; 23332917; 24252062; 28052128
Set publications
Sarah Leigh (Genomics England Curator)Publications for GBA2 were set to 23332916; 23332917; 24252062; 28052128
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Sarah Leigh (Genomics England Curator)Publications for GBA2 were set to 23332916; 23332917; 28052128
Set publications
Sarah Leigh (Genomics England Curator)Publications for GBA2 were set to 23332916; 23332917
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for GBA2 were set to Spastic paraplegia 46, autosomal recessive 614409
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for GBA2 were set to Spastic paraplegia 46, autosomal recessive 614409
Gene classified by Genomics England curator
Sarah Leigh (Genomics England Curator)This gene has been classified as Red List (Low Evidence).
Set mode of inheritance
Sarah Leigh (Genomics England Curator)Mode of inheritance for GBA2 was changed from to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Ellen McDonagh (Genomics England Curator)GBA2 was added to Intellectual disability update Jan 2018 panel. Sources: Expert Review Red
Created
Ellen McDonagh (Genomics England Curator)GBA2 was created by Ellen McDonagh