Hereditary ataxia with onset in adulthood
Gene: ATP2B3EnsemblGeneIds (GRCh38): ENSG00000067842
EnsemblGeneIds (GRCh37): ENSG00000067842
OMIM: 300014, Gene2Phenotype
ATP2B3 is in 5 panels
5 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
There are six unrelated cases reported with X-linked recessive variants in ATP2B3 gene and with a phenotype comprising ataxia. However, the onset of the disease was during childhood in three of these cases, while detailed clinical information was not available for the other three cases.Created: 18 Apr 2024, 9:34 p.m. | Last Modified: 18 Apr 2024, 9:36 p.m.
Panel Version: 4.34
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
?Spinocerebellar ataxia, X-linked 1, OMIM:302500
Publications
Dmitrijs Rots (Children's Clinical University Hospital)
36207321; 28807751; 25953895 describe 5 cases with ataxia + functional evidence, so enough evidence for green ratingCreated: 15 Dec 2022, 11:42 a.m. | Last Modified: 15 Dec 2022, 11:42 a.m.
Panel Version: 3.5
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Ataxia
Publications
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
3 DM for cerebellar ataxia in HGMD but only 1 report on OMIM - but this report includes functional studies.Created: 27 Apr 2019, 7:39 p.m.
Louise Daugherty (Genomics England Curator)
Review and rating submitted by James Polke (Neurogenetics Laboratory, Institute of Neurology, London) on behalf of London North GLH for GMS Neurology specialist test group
Created: 27 Apr 2019, 8:55 p.m.
Review and rating from Tracy Lester (Oxford Medical Genetics Laboratories Oxford University Hospitals NHS Foundation Trust) on behalf of Wessex and West Midlands GLH for GMS Neurology specialist test group.Created: 15 Apr 2019, 10:21 a.m.
Tracy Lester (Genetics laboratory, Oxford UK)
Single family in original paper, limited segregation but consistent with x-linked inheritance and functional evidence provided for the single variant. Second missense variant reported in PMID 28807751 with functional evidence, however compound het PMM2 variants reported in same patient - not enough evidence for pathogenicityCreated: 15 Apr 2019, 10:06 a.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
X-linked spinocerebellar ataxia, 302500
Mode of pathogenicity
Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype -please provide details in the comments
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Amber
- London North GLH
- NHS GMS
- Wessex and West Midlands GLH
- Hereditary ataxia v1.148
- Phenotypes
-
- ?Spinocerebellar ataxia, X-linked 1, OMIM:302500
- OMIM
- 300014
- Clinvar variants
- Variants in ATP2B3
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: ATP2B3 were changed from Spinocerebellar ataxia, X-linked 1; X-linked spinocerebellar ataxia, 302500 to ?Spinocerebellar ataxia, X-linked 1, OMIM:302500
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: ATP2B3 were set to
Set mode of inheritance
Achchuthan Shanmugasundram (Genomics England Curator)Mode of inheritance for gene: ATP2B3 was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Entity classified by Genomics England curator
Louise Daugherty (Genomics England Curator)Gene: atp2b3 has been classified as Amber List (Moderate Evidence).
Entity classified by Genomics England curator
Louise Daugherty (Genomics England Curator)Gene: atp2b3 has been classified as Amber List (Moderate Evidence).
Added New Source
Louise Daugherty (Genomics England Curator)Source London North GMS was added to ATP2B3.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Added phenotypes X-linked spinocerebellar ataxia, 302500 for gene: ATP2B3
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to ATP2B3.
Added New Source
Louise Daugherty (Genomics England Curator)Source Wessex and West Midlands GLH was added to ATP2B3.
Panel promoted to version 1.0
Louise Daugherty (Genomics England Curator)Louise Daugherty: Comment on phenotypes: Implica
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: ATP2B3 was added gene: ATP2B3 was added to Hereditary ataxia - adult onset. Sources: Hereditary ataxia v1.148,Expert Review Red Mode of inheritance for gene: ATP2B3 was set to Unknown Phenotypes for gene: ATP2B3 were set to Spinocerebellar ataxia, X-linked 1