Structural eye disease
Gene: FOXC1EnsemblGeneIds (GRCh38): ENSG00000054598
EnsemblGeneIds (GRCh37): ENSG00000054598
OMIM: 601090, Gene2Phenotype
FOXC1 is in 15 panels
3 reviews
Eleanor Williams (Genomics England Curator)
PMID: 32720677 - Ferre-Fernández et al 2020 - zebrafish knockout lines with combinations of the two orthologs of FOXC1 in zebrafish, foxc1a and foxc1b. 3 phenotypes:
1. foxc1a−/− single knockout homozygous embryos and foxc1−/− double knockout homozygous embryos - severe global vascular defects and early lethality, as well as microphthalmia, periocular edema and absence of the anterior chamber of the eye
2. fish with heterozygous loss of foxc1a combined with homozygosity for foxc1b (foxc1a+/−;foxc1b−/−) demonstrated craniofacial defects, heart anomalies and scoliosis
3. All other single and combined genotypes appeared normal.Created: 6 Oct 2020, 4:01 p.m. | Last Modified: 6 Oct 2020, 4:01 p.m.
Panel Version: 1.11
Publications
Nicola Ragge (Birmingham Women's and Children's NHS Foundation Hospital Trust)
DB Nishimura et al. 1998: many unrelated cases with anterior segment disorders, many of which have missense variantsCreated: 19 Jun 2019, 3:32 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Anterior segment dysgenesis 3, multiple subtypes 601631; Axenfeld-Rieger syndrome, type 3 602482
Publications
Mode of pathogenicity
Other - please provide details in the comments
Ivone Leong (Genomics England Curator)
Submitted on behalf of Professor Nicola Ragge (Wessex and West Midlands GLH). DB Nishimura et al. 1998: many unrelated cases with anterior segment disorders, many of which have missense variantsCreated: 17 Apr 2019, 3:30 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Anterior segment dysgenesis 3, multiple subtypes 601631; Axenfeld-Rieger syndrome, type 3 602482
Publications
Mode of pathogenicity
Other - please provide details in the comments
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- NHS GMS
- Expert Review Green
- Phenotypes
-
- Axenfeld-Rieger syndrome, type 3 602482
- Anterior segment dysgenesis 3, multiple subtypes 601631
- OMIM
- 601090
- Clinvar variants
- Variants in FOXC1
- Penetrance
- None
- Publications
- Mode of Pathogenicity
- Other - please provide details in the comments
- Panels with this gene
-
- Unexplained kidney failure in young people
- DDG2P
- Intellectual disability
- Bilateral congenital or childhood onset cataracts
- Retinal disorders
- Unexplained young onset end-stage renal disease - additional genes
- Sporadic aniridia
- Structural eye disease
- Monogenic hearing loss
- Fetal anomalies
- Familial cerebral small vessel disease
- Glaucoma (developmental)
- Skeletal dysplasia
- Anophthalmia or microphthalmia
- CAKUT
History Filter Activity
Set publications
Eleanor Williams (Genomics England Curator)Publications for gene: FOXC1 were set to 12036988; 17210863; 9620769; 10713890; 11007653; 12614756
Added New Source, Set mode of pathogenicity, Set Phenotypes, Set publications
Ivone Leong (Genomics England Curator)Source NHS GMS was added to FOXC1. Mode of pathogenicity for gene FOXC1 was changed from to Other - please provide details in the comments Added phenotypes Axenfeld-Rieger syndrome, type 3 602482; Anterior segment dysgenesis 3, multiple subtypes 601631 for gene: FOXC1 Publications for gene FOXC1 were changed from 9620769; 10713890; 12036988; 17210863; 12614756; 11007653 to 12036988; 17210863; 9620769; 10713890; 11007653; 12614756
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
Ellen McDonagh (Genomics England Curator)gene: FOXC1 was added gene: FOXC1 was added to Structural eye disease. Sources: Expert Review Green Mode of inheritance for gene: FOXC1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: FOXC1 were set to 9620769; 10713890; 12036988; 17210863; 12614756; 11007653 Phenotypes for gene: FOXC1 were set to Anterior segment dysgenesis 3, multiple subtypes 601631; Axenfeld-Rieger syndrome, type 3 602482