Non-acute porphyrias
Gene: GATA1EnsemblGeneIds (GRCh38): ENSG00000102145
EnsemblGeneIds (GRCh37): ENSG00000102145
OMIM: 305371, Gene2Phenotype
GATA1 is in 14 panels
2 reviews
Anna de Burca (Oxford University Hospitals NHS Foundation Trust)
PMID: 25251786 and 17148589 report a total of three unrelated male probands with clinical and haematological features of congenital erythropoietic porphyria, all with the same missense variant (R216W) in GATA1. However, in PMID: 25251786 one of the probands was also heterozygous for a pathogenic variant in UROS (a cause of AR congenital erythropoietic porphyria) and the other had a paternally inherited missense variant in SEC23B (a cause of congenital dyserythropoietic anemia type II).Created: 13 Jan 2019, 11:22 p.m.
Mode of inheritance
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Phenotypes
Congenital erythropoietic porphyria
Publications
Ivone Leong (Genomics England Curator)
Comment on list classification: Demoted from green to amber as there are only 3 cases associated with Non-Fanconi anaemia; however, variants in this gene will be reported with caution for non-acute porphyria. This is agreed upon by the gastrohepatology specialist group WebEx on 14th Jan 2019. Have put "watch list" tag.Created: 14 Jan 2019, 11:09 a.m.
Initial gene list and info collated by Miranda Durkie Sheffield Diagnostic Genetics Service December 2018 on behalf of the GMS Gastrohepatology specialist test group. Gene Symbol submitted: GATA1; Suggested intial gene rating: Green; Evidence for inclusion: none given; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none givenCreated: 7 Jan 2019, 3:53 p.m.
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Amber
- NHS GMS
- Phenotypes
-
- Thrombocytopenia, X-linked, with or without dyserythropoietic anemia OMIM:300367
- thrombocytopenia, X-linked, with or without dyserythropoietic anemia MONDO:0010308
- Tags
- OMIM
- 305371
- Clinvar variants
- Variants in GATA1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Haematological malignancies for rare disease
- Cutaneous photosensitivity with a likely genetic cause
- Cytopenia - NOT Fanconi anaemia
- Cytopenias and congenital anaemias
- Primary immunodeficiency or monogenic inflammatory bowel disease
- Bleeding and platelet disorders
- Limb disorders
- Non-acute porphyrias
- Haematological malignancies cancer susceptibility
- Rare anaemia
- Inherited bleeding disorders
- Fetal anomalies
- COVID-19 research
- Fetal hydrops
History Filter Activity
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for gene: GATA1 were changed from Thrombocytopenia, X-linked, with or without dyserythropoietic anemia, 300367; Congenital erythropoietic porphyria to Thrombocytopenia, X-linked, with or without dyserythropoietic anemia OMIM:300367; thrombocytopenia, X-linked, with or without dyserythropoietic anemia MONDO:0010308
Entity classified by Genomics England curator
Ivone Leong (Genomics England Curator)Gene: gata1 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: GATA1 were changed from to Thrombocytopenia, X-linked, with or without dyserythropoietic anemia, 300367; Congenital erythropoietic porphyria
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: GATA1 were set to
Set mode of inheritance
Ivone Leong (Genomics England Curator)Mode of inheritance for gene: GATA1 was changed from to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Added Tag
Ivone Leong (Genomics England Curator)Tag watchlist tag was added to gene: GATA1.
Entity classified by Genomics England curator
Ivone Leong (Genomics England Curator)Gene: gata1 has been classified as Amber List (Moderate Evidence).
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to GATA1. Rating Changed from Red List (low evidence) to Green List (high evidence)
Created, Added New Source, Set mode of inheritance
Ivone Leong (Genomics England Curator)gene: GATA1 was added gene: GATA1 was added to Non-acute porphyrias. Sources: NHS GMS Mode of inheritance for gene: GATA1 was set to