Description
This panel is used for clinical indication 'R347 Inherited predisposition to acute myeloid leukaemia (AML)' in the NHS Genomic Medicine Service.

Further information on the testing criteria and any overlapping clinical indications can be found within (https://www.england.nhs.uk/publication/national-genomic-test-directories/) under 'R347 Inherited predisposition to acute myeloid leukaemia (AML)'.

The content of this panel (version 1.2: https://panelapp.genomicsengland.co.uk/api/v1/panels/525/?version=1.2) was signed off under NHS Genomic Medicine Service governance on (03/03/2020).  

This panel will continue to be curated based on external reviews and Genomics England curation. New changes will be reflected in an increase to the minor version of the panel and details of these can be viewed in the 'Panel Activity' page. Periodically, these changes will be reviewed by a NHS Genomic Medicine Service evaluation process.  The content that is agreed for the GMS panels will be reflected in an updated version number.

CNVs, STRs and genes encoded by the mitochondrial genome may not be routinely included in the analysis where the panel is NOT delivered by WGS. Please contact your Genomic Laboratory Hub for information regarding specific queries.

Some of the genes in this panel cause conditions that typically present in adulthood. Please consider this when applying the panel.

5 reviewers

  • Carl Fratter (Oxford University Hospitals NHS Trust)

    Group: GeCIP domain
    Workplace: NHS diagnostic lab

  • Steve Keeney (Central Manchester Foundation Trust)

    Group: NHS Genomic Medicine Centre
    Workplace: NHS diagnostic lab

  • Louise Daugherty (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Mandy nesbitt (Healthcare Professional)

    Group: Other NHS organisation
    Workplace: NHS diagnostic lab

  • Paula Page (WWMGLH)

    Group: NHS Genomic Medicine Centre
    Workplace: NHS diagnostic lab

14 Entities

14 reviewed, 9 green

List Entity Reviews Mode of inheritance Details
14 Entitiess
Green Green List (high evidence)
ANKRD26
4 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
Phenotypes
  • 610855
  • 610855 (OMIN gene description ID)
  • not submitted (OMIM phenotype description ID)
Tags
Green Green List (high evidence)
CEBPA
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 601626 (OMIM phenotype description ID)
  • 116897 (OMIN gene description ID)
  • 116897 / 601626 Leukemia, acute myeloid, somatic
  • 601626 Leukemia, acute myeloid, somatic
Tags
Green Green List (high evidence)
DDX41
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 616871 {Myeloproliferative/lymphoproliferative neoplasms, familial (multiple types), susceptibility to}
  • 616871 (OMIM phenotype description ID)
Tags
Green Green List (high evidence)
ETV6
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 600618 Thrombocytopenia 5
  • 601626 Leukemia, acute myeloid, somatic
  • 601626 Leukemia, acute myeloid, somatic
Tags
Green Green List (high evidence)
GATA2
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 601626 {Leukemia, acute myeloid, susceptibility to}
  • 137295 (OMIN gene description ID)
  • 614286 {Myelodysplastic syndrome, susceptibility to}
  • 601626 {Leukemia, acute myeloid, susceptibility to}
Tags
Green Green List (high evidence)
RUNX1
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 601399 (OMIM phenotype description ID)
  • 601626 Leukemia, acute myeloid
  • 601399 Platelet disorder, familial, with associated myeloid malignancy
Tags
Green Green List (high evidence)
TERC
5 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • Dyskeratosis congenita, autosomal dominant 1, 27550
  • Aplastic anemia, 614743
  • Pulmonary fibrosis, idiopathic, susceptibility to, 614743
Tags
Green Green List (high evidence)
TERT
5 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 601626 {Leukemia, acute myeloid}
  • 187270 (OMIN gene description ID)
  • 187270 / 601626 {Leukemia, acute myeloid}
  • Dyskeratosis congenita, autosomal dominant 2, 613989
  • Dyskeratosis congenita, autosomal recessive 4, 613989
  • Leukemia, acute myeloid} 601626
  • Pulmonary fibrosis and/or bone marrow failure, telomere-related, 1, 614742
Tags
Green Green List (high evidence)
TP53
4 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 151623 (OMIM phenotype description ID)
  • 151623 Li-Fraumeni syndrome
Tags
Amber Amber List (moderate evidence)
ACD
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Research
Phenotypes
  • 616553 ?Dyskeratosis congenita, autosomal dominant 6
  • ?Dyskeratosis congenita, autosomal recessive 7
Tags
Amber Amber List (moderate evidence)
CHEK2
5 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 609265 Li-Fraumeni syndrome
  • 609265 (OMIM phenotype description ID)
Tags
Amber Amber List (moderate evidence)
RTEL1
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
  • Research
Phenotypes
  • Dyskeratosis congenita, autosomal dominant 4 615190
  • Dyskeratosis congenita, autosomal recessive 5 615190
  • Pulmonary fibrosis and/or bone marrow failure, telomere-related, 3 616373
Tags
Amber Amber List (moderate evidence)
SAMD9
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
  • Research
Phenotypes
  • MIRAGE syndrome 617053
Tags
Amber Amber List (moderate evidence)
SRP72
5 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • NHS GMS
  • North West GLH
  • Wessex and West Midlands GLH
  • Yorkshire and North East GLH
Phenotypes
  • 602122 (OMIN gene description ID)
  • 602122 Bone marrow failure syndrome 1
Tags

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