Ehlers Danlos syndrome with a likely monogenic cause
Gene: GGCXEnsemblGeneIds (GRCh38): ENSG00000115486
EnsemblGeneIds (GRCh37): ENSG00000115486
OMIM: 137167, Gene2Phenotype
GGCX is in 5 panels
5 reviews
Eleanor Williams (Genomics England Curator)
Comment on list classification: Following discussion at the GMS musculoskeletal specialist test group Webex on 2019-06-04, removing this gene from the panel as the associated PXE phenotype is beyond the scope of this panel.Created: 11 Jun 2019, 11 a.m.
This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: GGCX; Suggested initial gene rating: redCreated: 3 Apr 2019, 3:41 p.m.
Duncan Baker (Sheffield Genetics)
Following discussion with Dr G Sobey & Dr F van Dijk - rate redCreated: 3 Apr 2019, 3:44 p.m.
Genes for PXE not required on this panel, phenoptype does not overlap sufficiently.Created: 25 Jan 2019, 8:31 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Pseudoxanthoma elasticum-like disorder
Angela Brady (Nhs)
Neeti Ghali (NWTRGS, Northwick Park Hospital)
To be consistent with inclusion of ABCC6. Review from EDS National Diagnostic Service North West London Hospital NHS Trust: Dr Angela Brady FRCP PhD, Consultant Clinical Geneticist; Dr Neeti Ghali MBChB MD, Consultant Clinical Geneticist; Dr Fleur S van Dijk MD PhD, Consultant.Created: 7 Jul 2017, 6:29 p.m.
Louise Daugherty (Genomics England Curator)
Comment on list classification: changed form Red to Green due to recommendation from external expert reviewCreated: 10 Jul 2017, 2:28 p.m.
Comment on mode of inheritance: Inheritance: AD/AR/Digenic. Digenic inheritance (with ABCC6) has been reported in Pseudoxanthoma elasticumCreated: 7 May 2017, 12:56 p.m.
added tag pharmacogenetic- GGCX part of vitamin K metabolism and some variants have PXE (Pseudoxanthoma elasticum disorder) phenotype, some skeletal dysplasia, polymorphisms are used to predict warfarin metabolism (comment submitted by reviewer Anthony Vandersteen for the EDS panel)Created: 7 May 2017, 12:50 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Removed
- NHS GMS
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Pseudoxanthoma elasticum like disorder with multiple coagulation factor deficiency, 610842
- Tags
- OMIM
- 137167
- Clinvar variants
- Variants in GGCX
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Added Tag
Arina Puzriakova (Genomics England Curator)Tag curated_removed tag was added to gene: GGCX.
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: ggcx has been removed from the panel.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to GGCX. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Louise Daugherty (Genomics England Curator)25 July 2017 Panel reviews were assessed, and panel was revised according to reviews and further curation.
Set Mode of Inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for GGCX was changed to BIALLELIC, autosomal or pseudoautosomal
Set Mode of Inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for GGCX was changed to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for GGCX were set to Pseudoxanthoma elasticum like disorder with multiple coagulation factor deficiency, 610842
Set Mode of Inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for GGCX was changed to Other - please specifiy in evaluation comments
Set publications
Louise Daugherty (Genomics England Curator)Publications for GGCX were set to 5936414; 7085873; 9845520; 17110937; 18800149; 19116367
Set publications
Louise Daugherty (Genomics England Curator)Publications for GGCX were set to 5936414; 426915; 7085873; 9845520; 17110937; 18800149; 19116367
Set publications
Louise Daugherty (Genomics England Curator)Publications for GGCX were set to 5936414; 426915; 7085873; 9845520; 17110937; 18800149; 19116367;
Created
Ellen McDonagh (Genomics England Curator)GGCX was created by ellenmcdonagh
Added New Source
Ellen McDonagh (Genomics England Curator)GGCX was added to Ehlers-Danlos syndromespanel. Sources: Radboud University Medical Center, Nijmegen