Ehlers Danlos syndromes

Gene: TNXB

Green List (high evidence)

TNXB (tenascin XB)
EnsemblGeneIds (GRCh38): ENSG00000168477
EnsemblGeneIds (GRCh37): ENSG00000168477
OMIM: 600985, Gene2Phenotype
TNXB is in 10 panels

7 reviews

Ivone Leong (Genomics England Curator)

Comment on phenotypes: Previous phenotypes:
Ehlers-Danlos syndrome due to tenascin X deficiency, 606408;Classical-like EDS;clEDS;Ehlers-Danlos syndrome, classic-like type
Created: 18 Mar 2021, 2:07 p.m. | Last Modified: 18 Mar 2021, 2:07 p.m.
Panel Version: 2.50

Duncan Baker (Sheffield Genetics)

Green List (high evidence)

This gene has a pseudogene that covers some exons, maybe be possible to get round this during panel design
Created: 3 Apr 2019, 3:44 p.m.

Eleanor Williams (Genomics England Curator)

I don't know

This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: TNXB; Suggested initial gene rating: green
Created: 3 Apr 2019, 3:41 p.m.

Angela Brady (Nhs)

Green List (high evidence)

Neeti Ghali (NWTRGS, Northwick Park Hospital)

Green List (high evidence)

Louise Daugherty (Genomics England Curator)

Green List (high evidence)

Comment on publications: Cases with classical-like EDS with a variant in TNXB- to date 19 cases (from 15 families) PMID: 11642233,15733269,23768946,27582382,28306225
Created: 12 Apr 2017, 11:37 a.m.
The 2017 International Classification of the Ehlers–Danlos Syndromes Malfait et al., 2017. PMID 28306229. Note there are difficulties in DNA testing due to the presence of the pseudogene (TNXA), which is more than 97% identical to the 30 end of TNXB (exons 32–44). With the only exception of exon 35, which partially shows a TNXB-specific sequence, exon and intron sequences in this region are identical or almost identical in both the gene and the pseudogene. This has implications both for sequencing and deletion/ duplication analysis.
Created: 11 Apr 2017, 12:41 p.m.
Comment on publications: Added publications for evidence of gene-phenotype relationship to reflect current classification of EDS and The Ehlers–Danlos Syndromes, rare types. Malfait et al., 2017 (PMID:28306229), Brady et al., 2017 (PMID:28306225).
Created: 11 Apr 2017, 12:23 p.m.
In relation to the EDS pathogenetic scheme, TNXB belongs to 'Disorders of structure and function of myomatrix, the interface between muscle and ECM'. The scheme regroups EDS subtypes for which the proteins, coded by the causative genes, function within the same pathway, and which are likely to have shared pathogenic mechanisms, based on current knowledge.
Created: 11 Apr 2017, 12:16 p.m.
This gene is listed in the Ehlers Danlos Syndrome Variant Database https://eds.gene.le.ac.uk/home.php?select_db=TNXB
Created: 11 Apr 2017, 12:15 p.m.
Comment on phenotypes: Amended and updated phenotypes based in OMIM, Orphanet and The 2017 International Classification of the Ehlers–Danlos Syndromes Malfait et al., 2017
Created: 11 Apr 2017, 12:10 p.m.
This is a rare recessive form of EDS
Created: 30 Mar 2017, 10:47 a.m.

Ellen Thomas (Genomics England Curator)

Comment on list classification: Hard to interpret sequence data but definitely causes EDS.
Created: 8 Apr 2016, 3:16 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • NHS GMS
  • Expert list
  • Radboud University Medical Center, Nijmegen
  • Expert Review Green
Phenotypes
  • Ehlers-Danlos syndrome, classic-like, 1, OMIM:606408
OMIM
600985
Clinvar variants
Variants in TNXB
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

18 Mar 2021, Gel status: 3

Set Phenotypes

Ivone Leong (Genomics England Curator)

Phenotypes for gene: TNXB were changed from Ehlers-Danlos syndrome due to tenascin X deficiency, 606408; Classical-like EDS; clEDS; Ehlers-Danlos syndrome, classic-like type to Ehlers-Danlos syndrome, classic-like, 1, OMIM:606408

13 Mar 2019, Gel status: 3

Added New Source, Status Update

Eleanor Williams (Genomics England Curator)

Source NHS GMS was added to TNXB. Rating Changed from Green List (high evidence) to Green List (high evidence)

25 Jul 2017, Gel status: 4

panel promoted to version 1

Louise Daugherty (Genomics England Curator)

25 July 2017 Panel reviews were assessed, and panel was revised according to reviews and further curation.

12 Apr 2017, Gel status: 4

Set publications

Louise Daugherty (Genomics England Curator)

Publications for TNXB were set to 28306229; 28306225;11642233;15733269;23768946;27582382

11 Apr 2017, Gel status: 4

Set publications

Louise Daugherty (Genomics England Curator)

Publications for TNXB were set to 28306229;28306225

11 Apr 2017, Gel status: 4

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for TNXB were set to Ehlers-Danlos syndrome due to tenascin X deficiency, 606408;Classical-like EDS;clEDS;Ehlers-Danlos syndrome, classic-like type

24 Jan 2017, Gel status: 4

Added New Source

Ellen McDonagh (Genomics England Curator)

TNXB was added to Ehlers-Danlos syndromespanel. Sources: Radboud University Medical Center, Nijmegen,Expert list,Expert Review Green

24 Jan 2017, Gel status: 0

Created

Ellen McDonagh (Genomics England Curator)

TNXB was created by ellenmcdonagh