Cholestasis
Gene: USP53EnsemblGeneIds (GRCh38): ENSG00000145390
EnsemblGeneIds (GRCh37): ENSG00000145390
OMIM: 617431, Gene2Phenotype
USP53 is in 1 panel
3 reviews
Zornitza Stark (Australian Genomics)
8 unrelated families with cholestasis reported. Jaundice began at age <7 months. Cholestasis was transient in 7 families, with documented resolution of hyperbilirubinaemia in all (oldest patient aged 5 years). In another family, one individual required liver transplantation. Three individuals from two families had deafness.Created: 2 May 2020, 2:16 a.m. | Last Modified: 2 May 2020, 2:16 a.m.
Panel Version: 1.3
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Cholestasis; deafness
Publications
Variants in this GENE are reported as part of current diagnostic practice
Anna de Burca (Oxford University Hospitals NHS Foundation Trust)
Single case with homozygous truncating variant in USP53. Insufficient evidence at present.Created: 11 Jan 2019, 1:21 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Paediatric cholestatic liver disease
Publications
- PMID: 30250217
Ivone Leong (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Service approval.Created: 3 Mar 2022, 4:18 p.m. | Last Modified: 3 Mar 2022, 4:18 p.m.
Panel Version: 1.105
There is enough evidence to support a gene-disease association. This gene will be promoted to Green status at the next review.Created: 6 Oct 2020, 2:46 p.m. | Last Modified: 6 Oct 2020, 2:46 p.m.
Panel Version: 1.27
Comment on list classification: Demoted to amber as awaiting further evidence.Created: 4 Feb 2019, 11:23 a.m.
Initial gene list and info collated by Miranda Durkie Sheffield Diagnostic Genetics Service December 2018 on behalf of the GMS Gastrohepatology specialist test group. Gene Symbol submitted: UPS53; Suggested intial gene rating: Green; Evidence for inclusion: none given; Evidence for exclusion: none given; Technical notes (e.g. non-coding/CNV mutations requiring coverage?): none givenCreated: 7 Jan 2019, 4:42 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Paediatric cholestatic liver disease
- Cholestasis
- deafness
- OMIM
- 617431
- Clinvar variants
- Variants in USP53
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Ivone Leong (Genomics England Curator)Tag for-review was removed from gene: USP53.
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to USP53. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Added Tag
Ivone Leong (Genomics England Curator)Tag for-review tag was added to gene: USP53.
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: USP53 were set to 30250217; 32124521
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: USP53 were changed from Paediatric cholestatic liver disease to Paediatric cholestatic liver disease; Cholestasis; deafness
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: USP53 were set to 30250217
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: USP53 were changed from to Paediatric cholestatic liver disease
Set mode of inheritance
Ivone Leong (Genomics England Curator)Mode of inheritance for gene: USP53 was changed from to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Ivone Leong (Genomics England Curator)Gene: usp53 has been classified as Amber List (Moderate Evidence).
Set publications
Ivone Leong (Genomics England Curator)Publications for gene: USP53 were set to
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Green was added to USP53. Rating Changed from Red List (low evidence) to Green List (high evidence)
Created, Added New Source, Set mode of inheritance
Ivone Leong (Genomics England Curator)gene: USP53 was added gene: USP53 was added to Cholestasis. Sources: NHS GMS Mode of inheritance for gene: USP53 was set to