Multiple monogenic benign skin tumours

Gene: NOTCH3

Amber List (moderate evidence)

NOTCH3 (notch 3)
EnsemblGeneIds (GRCh38): ENSG00000074181
EnsemblGeneIds (GRCh37): ENSG00000074181
OMIM: 600276, Gene2Phenotype
NOTCH3 is in 16 panels

2 reviews

Eleanor Williams (Genomics England Curator)

Removed the Q4_21_expert_review and Q4_21_NHS_review tags from this gene, and added the watchlist tag as it has only enough evidence for Amber at the moment. If more evidence is found to support the gene-disease association then the eligibility criteria for the panel needs to be expanded before promoting the gene to green.
Created: 16 Mar 2022, 3:44 p.m. | Last Modified: 16 Mar 2022, 3:44 p.m.
Panel Version: 1.20
Comment on list classification: Promoting from grey to amber. 1 case plus functional studies supporting the role of the reported NOTCH3 variant in disease. Note the eligibility criteria for the clinical indication will need to be expanded before promoting to green.
Created: 24 Nov 2021, 6:27 p.m. | Last Modified: 25 Nov 2021, 4:48 p.m.
Panel Version: 1.18
Provisionally associated with ?Myofibromatosis, infantile 2 #615293 (AD) in OMIM which they state is characterized by the development of benign tumors in the skin, muscle, bone, and viscera.

PMID: 23731542 - Martignetti et al 2013 - In a family with Infantile myofibromatosis exome sequencing identified a heterozygous variant in NOTCH along with another candidate variant. By performing Sanger sequencing of 16 family members (9 affected and 7 unaffected) they found that only NOTCH3 mutation c.4556T>C (p.Leu1519Pro) segregated appropriately with affected status.

PMID: 33509954 - Wu et al 2021 - looked at the molecular consequences of the NOTCH3 L1519P mutation using HEK293 cells. The NOTCH3L1519P receptor generates enhanced downstream signaling in a ligand-independent manner, but is absent from the cell surface and accumulates in the endoplasmic reticulum instead. The protein with the variant upregulates PDGFRB expression in fibroblasts. This supports a functional link between Notch and PDGF dysregulation in Infantile myofibromatosis.
Created: 24 Nov 2021, 6:01 p.m. | Last Modified: 24 Nov 2021, 6:24 p.m.
Panel Version: 1.12

Publications

Tom Cullup (Great Ormond Street Hospital)

I don't know

Request to add PDGFRB and NOTCH3 to MMBST panel - phenotype appropriate, but may need to broaden eligibility criteria simultaneously.
Sources: Other
Created: 21 Oct 2021, 4:18 p.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
MYOFIBROMATOSIS, INFANTILE, 2

Publications

History Filter Activity

16 Mar 2022, Gel status: 2

Removed Tag, Removed Tag, Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q4_21_expert_review was removed from gene: NOTCH3. Tag Q4_21_NHS_review was removed from gene: NOTCH3. Tag watchlist tag was added to gene: NOTCH3.

25 Nov 2021, Gel status: 2

Added Tag, Added Tag

Eleanor Williams (Genomics England Curator)

Tag Q4_21_expert_review tag was added to gene: NOTCH3. Tag Q4_21_NHS_review tag was added to gene: NOTCH3.

24 Nov 2021, Gel status: 2

Entity classified by Genomics England curator

Eleanor Williams (Genomics England Curator)

Gene: notch3 has been classified as Amber List (Moderate Evidence).

24 Nov 2021, Gel status: 0

Set Phenotypes

Eleanor Williams (Genomics England Curator)

Phenotypes for gene: NOTCH3 were changed from MYOFIBROMATOSIS, INFANTILE, 2 to ?Myofibromatosis, infantile 2, OMIM:615293; myofibromatosis, infantile, 2, MONDO:0014122

24 Nov 2021, Gel status: 0

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: NOTCH3 were set to 23731542

21 Oct 2021, Gel status: 0

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Tom Cullup (Great Ormond Street Hospital)

gene: NOTCH3 was added gene: NOTCH3 was added to Multiple monogenic benign skin tumours. Sources: Other Mode of inheritance for gene: NOTCH3 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: NOTCH3 were set to 23731542 Phenotypes for gene: NOTCH3 were set to MYOFIBROMATOSIS, INFANTILE, 2 Penetrance for gene: NOTCH3 were set to unknown Review for gene: NOTCH3 was set to AMBER