Adult onset hereditary spastic paraplegia
Gene: RAB3GAP2EnsemblGeneIds (GRCh38): ENSG00000118873
EnsemblGeneIds (GRCh37): ENSG00000118873
OMIM: 609275, Gene2Phenotype
RAB3GAP2 is in 15 panels
4 reviews
Achchuthan Shanmugasundram (Genomics England Curator)
Comment on list classification: This gene is rated AMBER as all the cases are of childhood-onset.Created: 15 Mar 2023, 10:31 a.m. | Last Modified: 15 Mar 2023, 10:31 a.m.
Panel Version: 2.21
PMID:32740904 reported 9 cases identified with biallelic variants in RAB3GAP2 gene. Seven of them were diagnosed with Martsolf syndrome 1 (MIM #212720) and the remaining two with Warburg micro syndrome 2 (MIM #614225). All of them presented with spasticity (either paraparesis or quadriparesis) as one of the clinical manifestations. The age of patients ranged from 1 year 4 months to 14 years old, with six of them under 10 years old.
This gene has been associated with phenotypes in both OMIM and Gene2Phenotype.Created: 15 Mar 2023, 6:13 a.m. | Last Modified: 15 Mar 2023, 6:13 a.m.
Panel Version: 2.17
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Martsolf syndrome 1, OMIM:212720; Warburg micro syndrome 2, OMIM:614225
Publications
Nick Beauchamp (Sheffield Diagnostic Genetics Service)
Single family, childhood onset. No additional patients identified using Sheffield panel.Created: 10 May 2019, 1:06 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Publications
Variants in this GENE are reported as part of current diagnostic practice
Louise Daugherty (Genomics England Curator)
Review and rating from Chris Buxton (North Bristol NHS Trust), submitted by Natalie Forrester (SWGLH - Bristol Genetics) on behalf of South West GLH for GMS Neurology specialist test group.Created: 27 Apr 2019, 4:30 p.m.
Chris Buxton (North Bristol NHS Trust)
Described as a candidate HSP gene: Novarino (2014, 24482476) single account. Diagnostic on Sheffield HSP panel.Created: 27 Apr 2019, 4:17 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
spastic paraplegia; Warburg micro syndrome 2, 614225
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- NHS GMS
- Yorkshire and North East GLH
- South West GLH
- Phenotypes
-
- Martsolf syndrome 1, OMIM:212720
- Warburg micro syndrome 2, OMIM:614225
- OMIM
- 609275
- Clinvar variants
- Variants in RAB3GAP2
- Penetrance
- None
- Publications
- Panels with this gene
-
- Early onset or syndromic epilepsy
- DDG2P
- Dilated Cardiomyopathy and conduction defects
- Intellectual disability
- Corneal abnormalities
- Adult onset neurodegenerative disorder
- Malformations of cortical development
- Bilateral congenital or childhood onset cataracts
- Hereditary spastic paraplegia
- Structural eye disease
- Adult onset hereditary spastic paraplegia
- Fetal anomalies
- Skeletal dysplasia
- Childhood onset hereditary spastic paraplegia
- Anophthalmia or microphthalmia
History Filter Activity
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: rab3gap2 has been classified as Amber List (Moderate Evidence).
Removed Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q1_23_promote_green was removed from gene: RAB3GAP2.
Added Tag
Achchuthan Shanmugasundram (Genomics England Curator)Tag Q1_23_promote_green tag was added to gene: RAB3GAP2.
Set Phenotypes
Achchuthan Shanmugasundram (Genomics England Curator)Phenotypes for gene: RAB3GAP2 were changed from Warburg micro syndrome 2, OMIM:614225 to Martsolf syndrome 1, OMIM:212720; Warburg micro syndrome 2, OMIM:614225
Set publications
Achchuthan Shanmugasundram (Genomics England Curator)Publications for gene: RAB3GAP2 were set to 24482476
Entity classified by Genomics England curator
Achchuthan Shanmugasundram (Genomics England Curator)Gene: rab3gap2 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Arina Puzriakova (Genomics England Curator)Phenotypes for gene: RAB3GAP2 were changed from spastic paraplegia; Warburg micro syndrome 2, 614225 to Warburg micro syndrome 2, OMIM:614225
Set mode of inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for gene: RAB3GAP2 was changed from to BIALLELIC, autosomal or pseudoautosomal
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to RAB3GAP2.
Added New Source
Louise Daugherty (Genomics England Curator)Source Yorkshire and North East GLH was added to RAB3GAP2.
Set Phenotypes, Set publications
Louise Daugherty (Genomics England Curator)Added phenotypes spastic paraplegia; Warburg micro syndrome 2, 614225 for gene: RAB3GAP2 Publications for gene RAB3GAP2 were changed from to 24482476
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: RAB3GAP2 was added gene: RAB3GAP2 was added to Hereditary spastic paraplegia - adult onset. Sources: South West GLH Mode of inheritance for gene: RAB3GAP2 was set to