Adult onset hereditary spastic paraplegia
Gene: SLC1A4EnsemblGeneIds (GRCh38): ENSG00000115902
EnsemblGeneIds (GRCh37): ENSG00000115902
OMIM: 600229, Gene2Phenotype
SLC1A4 is in 8 panels
6 reviews
Sarah Leigh (Genomics England Curator)
The rating of this gene has been updated following NHS Genomic Medicine Service approval.Created: 14 Mar 2022, 1:19 p.m. | Last Modified: 14 Mar 2022, 1:19 p.m.
Panel Version: 1.95
Eleanor Williams (Genomics England Curator)
Comment on list classification: Leaving the rating as green, but with a recommendation for review of this gene at the next GMS review as all cases have onset in childhood and this is an adult onset panel.Created: 28 May 2021, 8:15 a.m. | Last Modified: 28 May 2021, 8:15 a.m.
Panel Version: 1.23
All cases to date have a childhood presentation - see review of cases on the Severe microcephaly panel https://panelapp.genomicsengland.co.uk/panels/162/gene/SLC1A4/Created: 26 May 2021, 4:13 p.m. | Last Modified: 26 May 2021, 4:13 p.m.
Panel Version: 1.21
Zornitza Stark (Australian Genomics)
Childhood onset.Created: 22 Sep 2020, 5:18 a.m. | Last Modified: 22 Sep 2020, 5:18 a.m.
Panel Version: 1.7
Louise Daugherty (Genomics England Curator)
Green gene with Amber GLH rating, Gene discussed in view of discrepant rating(s) from GLH(s). Green rating agreed at the GMS Neurology Specialist Test Group Webex on 17th May 2019.Created: 21 May 2019, 4:14 p.m.
Review and rating submitted byJames Polke (Neurogenetics Laboratory,Institute of Neurology, London), unless specified in the review comment, on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 4:50 p.m.
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
Victoria: delayed psychomotor development with lack of speech and inability to walk, postnatal progressive microcephaly, and spasticity. Publications in unrelated families,Created: 25 Apr 2019, 1:22 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Yorkshire and North East GLH
- NHS GMS
- London North GLH
- Phenotypes
-
- Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, OMIM:616657
- OMIM
- 600229
- Clinvar variants
- Variants in SLC1A4
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Removed Tag
Ivone Leong (Genomics England Curator)Tag Q2_21_phenotype was removed from gene: SLC1A4.
Added New Source, Status Update
Ivone Leong (Genomics England Curator)Source Expert Review Amber was added to SLC1A4. Rating Changed from Green List (high evidence) to Amber List (moderate evidence)
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: slc1a4 has been classified as Green List (High Evidence).
Set Phenotypes
Eleanor Williams (Genomics England Curator)Phenotypes for gene: SLC1A4 were changed from Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657 to Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, OMIM:616657
Removed Tag, Added Tag
Eleanor Williams (Genomics England Curator)Tag Q2_21_expert_review was removed from gene: SLC1A4. Tag Q2_21_phenotype tag was added to gene: SLC1A4.
Added Tag
Eleanor Williams (Genomics England Curator)Tag Q2_21_expert_review tag was added to gene: SLC1A4.
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene: SLC1A4 were set to
Added New Source
Louise Daugherty (Genomics England Curator)Source Yorkshire and North East GLH was added to SLC1A4.
Added New Source, Set mode of inheritance, Set Phenotypes, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to SLC1A4. Mode of inheritance for gene SLC1A4 was changed from to BIALLELIC, autosomal or pseudoautosomal Added phenotypes Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657 for gene: SLC1A4 Rating Changed from Red List (low evidence) to Green List (high evidence)
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to SLC1A4.
Created, Added New Source, Set mode of inheritance
Louise Daugherty (Genomics England Curator)gene: SLC1A4 was added gene: SLC1A4 was added to Hereditary spastic paraplegia - adult onset. Sources: London North GLH Mode of inheritance for gene: SLC1A4 was set to