Childhood onset hereditary spastic paraplegia
Gene: CAPN1EnsemblGeneIds (GRCh38): ENSG00000014216
EnsemblGeneIds (GRCh37): ENSG00000014216
OMIM: 114220, Gene2Phenotype
CAPN1 is in 6 panels
4 reviews
Nick Beauchamp (Sheffield Diagnostic Genetics Service)
Childhood and Adult onset. Knockout animal studies show effect on development. PMID: 29678961 describes patient with onset aged 14.Created: 8 May 2019, 4:45 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Publications
James Polke (Neurogenetics Laboratory, Institute of Neurology, London)
https://doi.org/10.1016/j.ejmg.2018.12.010 . Whole exome sequencing revealed novel pathogenic CAPN1 mutations in four patients from 3 families of Turkish, Japanese, and Punjabi descent and all were consanguineous. Onset in the four patients 20 and 37 years. Two also had mild ataxia. The phenotype of AR CAPN1 mutations appears to be spastic paraplegia with or without ataxia; onset commonly in adulthood. Eye movement abnormalities, skeletal defects, peripheral neuropathy and amyotrophy can sometimes be seenCreated: 28 Apr 2019, 4:16 p.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Spastic paraplegia 76 autosomal recessive, 616907
Louise Daugherty (Genomics England Curator)
Amber gene with Green GLH rating, Gene discussed in view of discrepant rating(s) from GLH(s). Green rating agreed at the GMS Neurology Specialist Test Group Webex on 17th May 2019.Created: 21 May 2019, 4:50 p.m.
Rating and review submitted on behalf of James Polke (Neurogenetics Laboratory,Institute of Neurology, London), on behalf of London North GLH for GMS Neurology specialist test group.Created: 9 May 2019, 4:54 p.m.
Comment on list classification: changed to Amber after internal clinical reviewCreated: 28 Jan 2019, 12:48 p.m.
Arianna Tucci (Genomics England Curator)
Age at onset 19 to 39 according to 27153400. consider marking as Amber following discussions with GLHCreated: 14 Jan 2019, 4:35 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Yorkshire and North East GLH
- NHS GMS
- London North GLH
- Expert list
- Phenotypes
-
- Spastic paraplegia 76 autosomal recessive, 616907
- OMIM
- 114220
- Clinvar variants
- Variants in CAPN1
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Added New Source, Status Update
Louise Daugherty (Genomics England Curator)Source Expert Review Green was added to CAPN1. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene: CAPN1 were set to 27153400
Added New Source
Louise Daugherty (Genomics England Curator)Source Yorkshire and North East GLH was added to CAPN1.
Added New Source
Louise Daugherty (Genomics England Curator)Source NHS GMS was added to CAPN1.
Added New Source
Louise Daugherty (Genomics England Curator)Source London North GLH was added to CAPN1.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Added phenotypes Spastic paraplegia 76 autosomal recessive, 616907 for gene: CAPN1
Panel promoted to version 1.0
Louise Daugherty (Genomics England Curator)Arianna Tucci: Age at onset 19 to 39 accordin
Set publications
Louise Daugherty (Genomics England Curator)Publications for gene: CAPN1 were set to
Entity classified by Genomics England curator
Louise Daugherty (Genomics England Curator)Gene: capn1 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Sarah Leigh (Genomics England Curator)gene: CAPN1 was added gene: CAPN1 was added to Hereditary spastic paraplegia - childhood onset. Sources: Expert list,Expert Review Green Mode of inheritance for gene: CAPN1 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: CAPN1 were set to Spastic paraplegia 76 autosomal recessive, 616907