Genes in panel
- ABCC9 1
- ABL1 1
- ACAN 1
- ACP5 1
- ACVR1 1
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AGA 1
- AGPS 1
- AKT1 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 1
- ARID1B 1
- ARSB 1
- ARSE 2
- ASXL2 1
- ATP6V0A2 1
- ATP7A 1
- B3GALT6 1
- B3GAT3 1
- B4GALT7 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 1
- C21orf2 2
- C2CD3 1
- CA2 1
- CANT1 1
- CASR 1
- CC2D2A 1
- CCDC8 1
- CDC45 2
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 2
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CKAP2L 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COL10A1 1
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 1
- COLEC11 1
- COMP 1
- CREBBP 1
- CRTAP 1
- CSPP1 1
- CTSA 1
- CTSC 1
- CTSK 1
- CUL7 1
- CYP27B1 1
- DDR2 1
- DHCR24 1
- DHODH 1
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNMT3A 1
- DOCK6 1
- DPM1 1
- DVL1 1
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 1
- EBP 1
- EED 1
- EFNB1 1
- EFTUD2 1
- EIF2AK3 1
- ENPP1 1
- EOGT 1
- EP300 1
- ERF 1
- ESCO2 1
- EVC 1
- EVC2 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 1
- FAM111A 1
- FAM20C 1
- FAM58A 2
- FBN1 1
- FBN2 1
- FERMT3 1
- FGF10 2
- FGF16 1
- FGF23 1
- FGFR1 1
- FGFR2 1
- FGFR3 2
- FIG4 1
- FKBP10 1
- FLNA 1
- FLNB 1
- FN1 1
- FUCA1 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 1
- GDF6 1
- GHR 1
- GJA1 1
- GLB1 1
- GLI3 1
- GNAS 1
- GNPAT 1
- GNPTAB 1
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 1
- GSC 1
- GUSB 1
- HDAC8 1
- HES7 1
- HGSNAT 1
- HOXD11 2
- HOXD13 1
- HPGD 2
- HSPG2 1
- IDH2 1
- IDS 1
- IDUA 1
- IFIH1 1
- IFITM5 1
- IFT122 1
- IFT140 1
- IFT172 1
- IFT80 1
- IGF1R 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 1
- KAT6A 1
- KAT6B 1
- KIF22 1
- KIF7 1
- KMT2D 1
- LBR 1
- LEMD3 1
- LIFR 1
- LMBR1 1
- LMNA 1
- LMX1B 1
- LONP1 1
- LPIN2 1
- LRP4 1
- LRP5 1
- LTBP3 1
- MAFB 1
- MAN2B1 1
- MANBA 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MEGF8 1
- MEOX1 1
- MESP2 1
- MGP 1
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MYCN 1
- NAGLU 1
- NANS 1
- NEK1 1
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 1
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 1
- OAT 1
- OBSL1 1
- OFD1 1
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 1
- PEX5 1
- PEX7 1
- PHEX 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3R1 1
- PITX1 1
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 1
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 1
- PPIB 1
- PRKAR1A 1
- PRMT7 1
- PSAT1 1
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 1
- RAB23 1
- RAB33B 1
- RAD21 1
- RASGRP2 1
- RBM8A 1
- RECQL4 1
- RFT1 1
- RMRP 1
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RUNX2 1
- SALL1 1
- SALL4 1
- SBDS 1
- SCARF2 1
- SEC24D 1
- SERPINF1 1
- SETD2 1
- SF3B4 1
- SFRP4 1
- SGSH 1
- SH3BP2 1
- SH3PXD2B 1
- SHOX 1
- SKI 1
- SLC17A5 1
- SLC26A2 1
- SLC29A3 1
- SLC34A3 1
- SLC35D1 1
- SLC39A13 1
- SLCO2A1 1
- SMAD3 1
- SMAD4 1
- SMARCAL1 1
- SMC1A 1
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX9 1
- SUMF1 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 1
- TBX6 1
- TBXAS1 1
- TCF12 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 2
- TCTN2 1
- TCTN3 1
- TERT 1
- TGDS 1
- TGFB1 1
- TGFB2 1
- TGFBR1 1
- TGFBR2 1
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TTC21B 1
- TWIST1 1
- TYROBP 1
- WDR34 2
- WDR35 1
- WDR60 2
- WISP3 2
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 1
- WRN 1
- XRCC4 1
- XYLT1 1
- YY1 1
- ZMPSTE24 1
- COLEC10 1
- CREB3L1 1
- DCC 1
- DLX6 1
- FBLIM1 1
- FBLN1 1
- FGF9 2
- GDF3 1
- GPX4 1
- GZF1 1
- HDAC4 1
- HNRNPK 1
- HOXA11 2
- HOXA13 2
- ICK 2
- IDH1 1
- IFT43 1
- IFT52 1
- IFT81 1
- LFNG 1
- LTBP2 1
- NIN 1
- PGM3 1
- PIK3CA 1
- PLEKHM1 1
- RBPJ 1
- RIPPLY2 1
- SERPINH1 1
- SP7 1
- TMEM67 1
- UFSP2 1
- WDR19 1
- WNT3 1
- XYLT2 1
- ZIC1 1
- ALX1 1
- ASXL1 1
- B9D1 1
- CD96 2
- MIR17HG 1
- SLCO5A1 1
- SULF1 1
- THPO 1
- TWIST2 1
STRs in panel
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Regions in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 1 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 1 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 1 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 1 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 1
This Panel is marked as Deleted
GMS Musculoskeletal specialist test group Skeletal dysplasia
Gene: MAP3K7 Green List (high evidence)
MAP3K7 (mitogen-activated protein kinase kinase kinase 7)
EnsemblGeneIds (GRCh38): ENSG00000135341
EnsemblGeneIds (GRCh37): ENSG00000135341
OMIM: 602614, Gene2Phenotype
MAP3K7 is in 6 panels
EnsemblGeneIds (GRCh38): ENSG00000135341
EnsemblGeneIds (GRCh37): ENSG00000135341
OMIM: 602614, Gene2Phenotype
MAP3K7 is in 6 panels
1 review
Tracy Lester (Genetics laboratory, Oxford UK)
Green List (high evidence)
Not in nosology paper but phenotype is frontometaphyseal dysplasia. Several cases reported. recurrent P485L variant in majority of cases. No truncations.; Review on behalf of Tracy LesterCreated: 6 Mar 2019, 11:52 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Frontometaphyseal dysplasia 2, 617137
Publications
Mode of pathogenicity
Other - please provide details in the comments
Created: 6 Mar 2019, 11:52 a.m.
Panel version: 0.2
Panel version: 0.2
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Frontometaphyseal dysplasia 2, 617137
- OMIM
- 602614
- Clinvar variants
- Variants in MAP3K7
- Penetrance
- None
- Panels with this gene
History Filter Activity
6 Mar 2019, Gel status: 4
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Eleanor Williams (Genomics England Curator)gene: MAP3K7 was added gene: MAP3K7 was added to GMS Musculoskeletal specialist test group Skeletal dysplasia. Sources: NHS GMS,Expert Review Green Mode of inheritance for gene: MAP3K7 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Phenotypes for gene: MAP3K7 were set to Frontometaphyseal dysplasia 2, 617137