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Congenital muscular dystrophy and congenital myopathy

Gene: TNNT1

Green List (high evidence)

TNNT1 (troponin T1, slow skeletal type)
EnsemblGeneIds (GRCh38): ENSG00000105048
EnsemblGeneIds (GRCh37): ENSG00000105048
OMIM: 191041, Gene2Phenotype
TNNT1 is in 3 panels

6 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on mode of inheritance: As reviewed by Anna Sarkozy, monoallelic variants in TNNT1 have been reported in two unrelated families with nemaline myopathy and supported by in vitro functional studies. There is sufficient evidence available for updating the MOI from "BIALLELIC, autosomal or pseudoautosomal" to "BOTH monoallelic and biallelic, autosomal or pseudoautosomal" in the next GMS review.
Created: 24 Dec 2023, 10:32 p.m. | Last Modified: 24 Dec 2023, 10:32 p.m.
Panel Version: 0.215
Anna Sarkozy (Great Ormond Street Hospital) editing her previous review on this gene on the old GMS Congenital myopathy panel on 24 Mar 2023 notes (rated Green): 'comment re inheritance: both dominant and recessive TNNT1 gene variants have now been reported in patients with congenital myopathies. Dominant mutations are likely acting via a dominant negative mechanism'.

Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes: nemaline myopathy; Nemaline Myopathy, Recessive; Nemaline myopathy 5, Amish type, 605355; autpsomal dominant nemaline myopathy

Publications: 26296490; 25430424; 35510366; 29178646
Created: 24 Dec 2023, 10:29 p.m. | Last Modified: 24 Dec 2023, 10:29 p.m.
Panel Version: 0.214

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes
Nemaline myopathy 5, Amish type, OMIM:605355

Publications

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

The mode of inheritance of this gene has been updated to 'BOTH monoallelic and biallelic, autosomal or pseudoautosomal' following NHS Genomic Medicine Service approval.
Created: 2 May 2024, 3:45 p.m. | Last Modified: 2 May 2024, 4:01 p.m.
Panel Version: 0.229
PMID: 32994279 - Three additional unrelated cases with nemaline myopathy due to different biallelic variants in TNNT1. The variants comprised a homozygous deletion of exons 8 and 9; two compound het nonsense and splice-site variants; and a homozygous nonsense variant. Western blot analysis revealed the total absence of the troponin protein in all three cases.
Created: 5 Oct 2020, 9:33 a.m. | Last Modified: 5 Oct 2020, 9:33 a.m.
Panel Version: 2.7

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes
Nemaline myopathy 5, Amish type, 605355; Nemaline Myopathy

Publications

Louise Daugherty (Genomics England Curator)

I don't know

Gene rating and review submitted by Rachael Mein, Viapath Guy's Hospital February 2019 on on behalf of London South GLH for the GMS Neurology specialist test group.
Created: 30 Apr 2019, 10:09 a.m.

Rachael Mein (Viapath at Guy's Hospital)

Green List (high evidence)

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
nemaline myopathy; Nemaline Myopathy, Recessive; Nemaline myopathy 5, Amish type, 605355

Publications

Variants in this GENE are reported as part of current diagnostic practice

Anna Sarkozy (Great Ormond Street Hospital)

Green List (high evidence)

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
nemaline myopathy; Nemaline Myopathy, Recessive; Nemaline myopathy 5, Amish type, 605355

Publications

Helen Brittain (Genomics England Curator)

Green List (high evidence)

Comment when marking as ready: several families in 3 populations.
Created: 2 Feb 2017, 12:03 p.m.
Initially described in Amish population only, with founder effect. Recently described in 7 Palestinian families (single mutation) and Hispanic individual. In view of the number of families and an appropriate phenotype, considered green. However, founder mutations make up the majority of reported cases to date.
Created: 26 Jan 2017, 11:59 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Nemaline myopathy 5, Amish type 605355

Publications

Details

Mode of Inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • London South GLH
  • Expert Review Green
  • Emory Genetics Laboratory
  • Radboud University Medical Center, Nijmegen
  • NHS GMS
  • Illumina TruGenome Clinical Sequencing Services
  • Expert
  • UKGTN
Phenotypes
  • Nemaline myopathy 5, Amish type, OMIM:605355
OMIM
191041
Clinvar variants
Variants in TNNT1
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

3 May 2024, Gel status: 3

Removed Tag, Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_23_MOI was removed from gene: TNNT1. Tag Q2_23_NHS_review was removed from gene: TNNT1.

2 May 2024, Gel status: 3

Set mode of inheritance

Achchuthan Shanmugasundram (Genomics England Curator)

Mode of inheritance for gene TNNT1 was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal

24 Dec 2023, Gel status: 3

Added Tag, Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_23_MOI tag was added to gene: TNNT1. Tag Q2_23_NHS_review tag was added to gene: TNNT1.

24 Dec 2023, Gel status: 3

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: TNNT1 were set to 26296490; 25430424; 32994279

24 Dec 2023, Gel status: 3

Set mode of inheritance

Achchuthan Shanmugasundram (Genomics England Curator)

Mode of inheritance for gene: TNNT1 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal

6 Feb 2023, Gel status: 3

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Arina Puzriakova (Genomics England Curator)

gene: TNNT1 was added gene: TNNT1 was added to Congenital muscular dystrophy and congenital myopathy. Sources: UKGTN,Expert,Illumina TruGenome Clinical Sequencing Services,NHS GMS,Radboud University Medical Center, Nijmegen,Emory Genetics Laboratory,Expert Review Green,London South GLH Mode of inheritance for gene: TNNT1 was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: TNNT1 were set to 26296490; 25430424; 32994279 Phenotypes for gene: TNNT1 were set to Nemaline myopathy 5, Amish type, OMIM:605355 Penetrance for gene: TNNT1 were set to Complete