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Congenital muscular dystrophy and congenital myopathy

Gene: TPM2

Green List (high evidence)

TPM2 (tropomyosin 2)
EnsemblGeneIds (GRCh38): ENSG00000198467
EnsemblGeneIds (GRCh37): ENSG00000198467
OMIM: 190990, Gene2Phenotype
TPM2 is in 5 panels

8 reviews

Arina Puzriakova (Genomics England Curator)

Green List (high evidence)

The mode of inheritance of this gene has been updated to 'BOTH monoallelic and biallelic, autosomal or pseudoautosomal' following NHS Genomic Medicine Service approval.
Created: 2 May 2024, 3:45 p.m. | Last Modified: 2 May 2024, 4:01 p.m.
Panel Version: 0.229

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

Comment on mode of inheritance: Three unrelated cases are reported with biallelic variants in TPM2. This is sufficient evidence to update the MOI from "MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown" to "BOTH monoallelic and biallelic, autosomal or pseudoautosomal" in the next major review.
Created: 24 Dec 2023, 10:46 p.m. | Last Modified: 24 Dec 2023, 10:46 p.m.
Panel Version: 0.217
PMID:19155175 reported the identification of a homozygous null variant in TPM2 gene in a patient presented with nemaline myopathy associated with a non-lethal multiple pterygium syndrome.

Among 28 patients from 27 families reported in PMID:24692096, only one patient presenting with nemaline myopathy and pterygia was identified with recessive TPM2 variant.

A homozygous intronic sequence variant was identified in the patient reported with Escobar variant of multiple pterygium syndrome and congenital myopathy in PMID:33558124.

Only phenotypes associated with monoallelic variants (and NOT biallelic variants) are currently reported in OMIM and in Gene2Phenotype.
Created: 24 Dec 2023, 10:44 p.m. | Last Modified: 24 Dec 2023, 10:44 p.m.
Panel Version: 0.216
Anna Sarkozy (Great Ormond Street Hospital) editing her previous review on this gene on the old GMS Congenital myopathy panel on 24 Mar 2023 notes (rated Green): 'comment re inheritance: recessive TPM2 pathogenic variant has been described in a patient with multiple pterygium syndrome and congenital myopathy. heterozygous carrier parents were unaffected, supporting recessive inheritance of the variant.'

Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes: CAP myopathy 2 609285; Nemaline myopathy 4, autosomal dominant 609285; recessively inherited Escobar variant of multiple pterygium syndrome and congenital myopathy

Publications: 33558124
Created: 24 Dec 2023, 10:37 p.m. | Last Modified: 24 Dec 2023, 10:37 p.m.
Panel Version: 0.216

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Publications

Ivone Leong (Genomics England Curator)

As there are only currently 2 homozygous cases, there is currently not enough evidence to support a change in MOI. It should also be noted that the parents (heterozygous for the variants) were asymptomatic.
Created: 12 Jul 2021, 10:43 a.m. | Last Modified: 12 Jul 2021, 10:43 a.m.
Panel Version: 2.55
Comment on publications: PMID: 19155175 and 33558124 describe the 2 homozygous cases
Created: 12 Jul 2021, 9:50 a.m. | Last Modified: 12 Jul 2021, 9:50 a.m.
Panel Version: 2.53

Zornitza Stark (Australian Genomics)

Green List (high evidence)

Note two families reported now with bi-allelic disease, one presenting with congenital myopathy and the other with multiple pterygium syndrome.
Created: 13 Jun 2021, 7:58 a.m. | Last Modified: 13 Jun 2021, 7:58 a.m.
Panel Version: 2.28

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes
Congenital myopathy; Multiple pterygium syndrome

Publications

Louise Daugherty (Genomics England Curator)

I don't know

Gene rating and review submitted by Rachael Mein, Viapath Guy's Hospital February 2019 on on behalf of London South GLH for the GMS Neurology specialist test group.
Created: 30 Apr 2019, 10:09 a.m.

Rachael Mein (Viapath at Guy's Hospital)

Green List (high evidence)

Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal

Phenotypes
CAP myopathy 2 609285; Nemaline myopathy 4, autosomal dominant 609285; Arthrogryposis multiplex congenita, distal, type1 108120: Arthrogryposis, distal, type 2B 601680

Publications

Variants in this GENE are reported as part of current diagnostic practice

Anna Sarkozy (Great Ormond Street Hospital)

Green List (high evidence)

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Phenotypes
CAP myopathy 2 609285; Nemaline myopathy 4, autosomal dominant 609285

Helen Brittain (Genomics England Curator)

Green List (high evidence)

Comment when marking as ready: Many families, monoallelic except single case with pterygia
Created: 2 Feb 2017, 12:10 p.m.
Comment on mode of inheritance: One case of Nemaline myopathy and pterygia found with homozygous mutation. All heterozygous otherwise.
Created: 2 Feb 2017, 12:09 p.m.
Note that the only cases I found of truncating mutations were in a homozygous form. Otherwise, dominant inheritance appears to be associated with missense mutations.
Created: 26 Jan 2017, 1:12 p.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

Phenotypes
CAP myopathy 2 609285; Nemaline myopathy 4, autosomal dominant 609285

Publications

Details

Mode of Inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Illumina TruGenome Clinical Sequencing Services
  • London South GLH
  • Radboud University Medical Center, Nijmegen
  • Expert Review Green
  • Emory Genetics Laboratory
  • UKGTN
  • NHS GMS
  • Expert
Phenotypes
  • CAP myopathy 2, OMIM:609285
  • Nemaline myopathy 4, autosomal dominant, OMIM:609285
OMIM
190990
Clinvar variants
Variants in TPM2
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

3 May 2024, Gel status: 3

Removed Tag, Removed Tag, Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag watchlist_moi was removed from gene: TPM2. Tag Q2_23_MOI was removed from gene: TPM2. Tag Q2_23_NHS_review was removed from gene: TPM2.

2 May 2024, Gel status: 3

Set mode of inheritance

Achchuthan Shanmugasundram (Genomics England Curator)

Mode of inheritance for gene TPM2 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal

24 Dec 2023, Gel status: 3

Set mode of inheritance

Achchuthan Shanmugasundram (Genomics England Curator)

Mode of inheritance for gene: TPM2 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown

24 Dec 2023, Gel status: 3

Added Tag, Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_23_MOI tag was added to gene: TPM2. Tag Q2_23_NHS_review tag was added to gene: TPM2.

6 Feb 2023, Gel status: 3

Created, Added New Source, Added Tag, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance

Arina Puzriakova (Genomics England Curator)

gene: TPM2 was added gene: TPM2 was added to Congenital muscular dystrophy and congenital myopathy. Sources: Expert,NHS GMS,UKGTN,Emory Genetics Laboratory,Expert Review Green,Radboud University Medical Center, Nijmegen,London South GLH,Illumina TruGenome Clinical Sequencing Services watchlist_moi tags were added to gene: TPM2. Mode of inheritance for gene: TPM2 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Publications for gene: TPM2 were set to 12592607; 11738357; 17434307; 24692096; 32092148; 27726070; 19155175; 33558124 Phenotypes for gene: TPM2 were set to CAP myopathy 2, OMIM:609285; Nemaline myopathy 4, autosomal dominant, OMIM:609285 Penetrance for gene: TPM2 were set to Complete