Osteogenesis imperfecta
Gene: TAPT1EnsemblGeneIds (GRCh38): ENSG00000169762
EnsemblGeneIds (GRCh37): ENSG00000169762
OMIM: 612758, Gene2Phenotype
TAPT1 is in 10 panels
5 reviews
Zornitza Stark (Australian Genomics)
Two families reported only.Created: 4 May 2020, 11:04 a.m. | Last Modified: 4 May 2020, 11:04 a.m.
Panel Version: 2.3
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type (MIM#616897)
Publications
Duncan Baker (Sheffield Genetics)
Eleanor Williams (Genomics England Curator)
Comment on list classification: Leaving rating as green; 2 cases reported, supportive zebrafish data and green review by NHS expert.Created: 16 Sep 2021, 1:25 p.m. | Last Modified: 16 Sep 2021, 1:25 p.m.
Panel Version: 2.36
Only 2 cases reported but PMID: 26365339 - Symoens et al 2015 - also report that knock-down of zebrafish tapt1b resulted in severe malformations of the craniofacial skeleton and delayed ossification.
PMID: 17151244 - Howell et al 2007 - also reports a skeletal phenotype in a mouse with a homozygous mutation in Tapt1, primarily posterior-to-anterior transformations of the vertebral column midsection.Created: 16 Sep 2021, 1:23 p.m. | Last Modified: 16 Sep 2021, 1:23 p.m.
Panel Version: 2.35
This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: TAPT1; Suggested initial gene rating: greenCreated: 3 Apr 2019, 4:08 p.m.
Meena Balasubramanian (Sheffield Children's NHS Foundation Trust)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Gene added by a reviewer and rated green. It is a probable DD gene for complex lethal osteochondrodysplasia. 2 families are reported in OMIM for Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type, from one recent publication. The phenotype includes multiple fractures, therefore it was decided this should be included on the OI panel.Created: 12 May 2016, 1:59 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- NHS GMS
- Phenotypes
-
- Osteogenesis Imperfecta
- OMIM
- 612758
- Clinvar variants
- Variants in TAPT1
- Penetrance
- Complete
- Publications
-
- PMID:26365339
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: tapt1 has been classified as Green List (High Evidence).
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to TAPT1. Rating Changed from Green List (high evidence) to Green List (high evidence)
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for TAPT1 were set to PMID:26365339
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Created
Meena Balasubramanian (Sheffield Children's NHS Foundation Trust)TAPT1 was created by [email protected]
Added New Source
Meena Balasubramanian (Sheffield Children's NHS Foundation Trust)TAPT1 was added to Osteogenesis Imperfectapanel. Sources: Expert Review