Congenital myopathy

Gene: MT-TE

Red List (low evidence)

MT-TE (mitochondrially encoded tRNA glutamic acid)
EnsemblGeneIds (GRCh38): ENSG00000210194
EnsemblGeneIds (GRCh37): ENSG00000210194
OMIM: 590025, Gene2Phenotype
MT-TE is in 7 panels

2 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Red List (low evidence)

After NHS Genomic Medicine Service consideration, the rating of this gene has been updated to red. GLH review concluded that mitochondrial myopathies are not good fit for this panel. R300 Possible mitochondrial disorder - whole mitochondrial genome sequencing would be the more appropriate test.
Created: 11 Dec 2025, 5:32 p.m. | Last Modified: 11 Dec 2025, 5:32 p.m.
Panel Version: 6.43
Comment on list classification: As reviewed below, patients with MT-TE variants are reported with either congenital myopathy or adult-onset myopathy. As there are >3 unrelated cases with congenital myopathy, this gene can be considered for promotion to green rating in the next GMS update.
Created: 28 Jun 2025, 6:09 p.m. | Last Modified: 28 Jun 2025, 6:09 p.m.
Panel Version: 6.28
PMID:7726155 - The m.14709 C>T variant in MT-TE gene has been reported in a family, where the proband and his sister presented with congenital myopathy and mental retardation and subsequently developed cerebellar ataxia. Other family members had adult-onset diabetes mellitus with or without muscle weakness (myopathy). Primary myoblast, but not fibroblast, cultures containing high proportions of mtDNA with the above variants exhibited impaired mitochondrial translation.

PMID:10392369 - A mother and son affected with diabetes mellitus and myopathy were identified with a m.14709 C>T variant. The son was reported with hypotonia and developmental delay, and was diagnosed as having mitochondrial myopathy based on muscle biopsy at the age of five years.

PMID:15607216 - Three patients from two unrelated families were reported with the identification of m.14709 C>T variant. The first patient is a 21-month-old child with severe congenital myopathy, respiratory distress and mild mental retardation. The other two patients are 51- and 55-year-old siblings with slowly progressive myopathy and diabetes mellitus.

PMID:21194154 - Eight patients from seven families with reversible infantile cytochrome c oxidase deficiency myopathy were identified with a homoplasmic m.14674T>C or m.14674T>G variant. Two of these patients had the clinical diagnosis of congenital myopathy and five others had mitochondrial myopathy.
Created: 28 Jun 2025, 5:37 p.m. | Last Modified: 28 Jun 2025, 5:37 p.m.
Panel Version: 6.25

Mode of inheritance
MITOCHONDRIAL

Phenotypes
inborn mitochondrial myopathy, MONDO:0009637; congenital myopathy, MONDO:0019952

Publications

Katherine Schon (University of Cambridge)

Green List (high evidence)

The 14709 C>T pathogenic variant in MT-TE has been reported in families with congenital myopathy, and the m.14674T>C pathognenic variant causes reversible COX deficiency which usually presents with hypotonia in the first year of life.
Created: 24 Jun 2025, 10:53 a.m. | Last Modified: 24 Jun 2025, 10:53 a.m.
Panel Version: 6.10

Mode of inheritance
MITOCHONDRIAL

Publications

Mode of pathogenicity
Other

Details

Mode of Inheritance
MITOCHONDRIAL
Sources
  • NHS GMS
  • Expert Review Red
  • Literature
Phenotypes
  • inborn mitochondrial myopathy, MONDO:0009637
  • congenital myopathy, MONDO:0019952
Tags
locus-type-rna-transfer
OMIM
590025
Clinvar variants
Variants in MT-TE
Penetrance
None
Publications
Mode of Pathogenicity
Other
Panels with this gene

History Filter Activity

11 Dec 2025, Gel status: 1

Removed Tag, Removed Tag, Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_25_ promote_green was removed from gene: MT-TE. Tag Q2_25_expert_review was removed from gene: MT-TE. Tag Q2_25_ NHS_review was removed from gene: MT-TE.

11 Dec 2025, Gel status: 1

Added New Source, Added New Source, Status Update

Achchuthan Shanmugasundram (Genomics England Curator)

Source Expert Review Red was added to MT-TE. Source NHS GMS was added to MT-TE. Rating Changed from Amber List (moderate evidence) to Red List (low evidence)

29 Jun 2025, Gel status: 2

Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag locus-type-rna-transfer tag was added to gene: MT-TE.

28 Jun 2025, Gel status: 2

Entity classified by Genomics England curator

Achchuthan Shanmugasundram (Genomics England Curator)

Gene: mt-te has been classified as Amber List (Moderate Evidence).

28 Jun 2025, Gel status: 1

Set Phenotypes

Achchuthan Shanmugasundram (Genomics England Curator)

Phenotypes for gene: MT-TE were changed from to inborn mitochondrial myopathy, MONDO:0009637; congenital myopathy, MONDO:0019952

28 Jun 2025, Gel status: 1

Set publications

Achchuthan Shanmugasundram (Genomics England Curator)

Publications for gene: MT-TE were set to

28 Jun 2025, Gel status: 1

Added Tag, Added Tag, Added Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_25_ promote_green tag was added to gene: MT-TE. Tag Q2_25_expert_review tag was added to gene: MT-TE. Tag Q2_25_ NHS_review tag was added to gene: MT-TE.

24 Jun 2025, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set mode of pathogenicity

Achchuthan Shanmugasundram (Genomics England Curator)

gene: MT-TE was added gene: MT-TE was added to Congenital myopathy. Sources: Literature Mode of inheritance for gene gene: MT-TE was set to MITOCHONDRIAL Mode of pathogenicity for gene: MT-TE was set to Other