Description
This panel is used as a virtual panel to analyse genome or exome data in the NHS Genomic Medicine Service; the panel will routinely be applied for clinical indication 'R98 Likely inborn error of metabolism - targeted testing not possible' but can also be used as part of the analysis for a broader clinical presentation, where relevant.

Further information on the testing criteria and any overlapping clinical indications can be found within (https://www.england.nhs.uk/publication/national-genomic-test-directories/) under 'R98 Likely inborn error of metabolism - targeted testing not possible'.

A version of this panel has been signed off under NHS Genomic Medicine Service governance (see 'Latest signed off version' in the panel header information).

This panel will continue to be curated based on external reviews and Genomics England curation. New changes will be reflected in an increase to the minor version of the panel and details of these can be viewed in the 'Panel Activity' page. Periodically, these changes will be reviewed by a NHS Genomic Medicine Service evaluation process.  The content that is agreed for the GMS panels will be reflected in an updated signed off version number.

Some of the genes in this panel cause conditions that typically present in adulthood. Please consider this when applying the panel.

This panel is also a constituent panel of super panel 'Childhood onset leukodystrophy', 'Hypotonic infant' and 'Paediatric disorders'. Changes made to this panel will automatically be updated in the relevant super panel(s).

This panel was originally created from the following panels: 
- Undiagnosed metabolic disorders (v1.82 code 302)
- Mitochondrial disorders (v1.75 code 112) 
- Congenital disorders of glycosylation (v1.20 code 25)

28 reviewers

  • Ellen McDonagh (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Katherine Smith (Genomics England)

    Group: Other
    Workplace: Other

  • Tracy Lester (Genetics laboratory, Oxford UK)

    Group: NHS Genomic Medicine Centre
    Workplace: NHS diagnostic lab

  • Carl Fratter (Oxford University Hospitals NHS Trust)

    Group: GeCIP domain
    Workplace: NHS diagnostic lab

  • Emma Ashton (Great Ormond Street Hospital)

    Group: NHS Genomic Medicine Centre
    Workplace: NHS diagnostic lab

  • Richard Scott (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Ellen Thomas (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Shamima Rahman (UCL Institute of Child Health)

    Group: GeCIP domain
    Workplace: NHS clinical service

  • Olivia Niblock (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Sarah Leigh (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Louise Daugherty (NIHR BioResource - Rare Diseases Study (NIHRBR-RD), University of Cambridge & NHS Blood and Transplant)

    Group: Other NHS organisation
    Workplace: Other

  • Rebecca Foulger (Genomics England curator)

    Group: Other
    Workplace: Other

  • Louise Daugherty (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Saikat Santra (Birmingham Children's Hospital)

    Group: GeCIP domain
    Workplace: NHS clinical service

  • Arianna Tucci (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Helen Brittain (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Eleanor Williams (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Zornitza Stark (Australian Genomics)

    Group: Other
    Workplace: Other clinical service

  • Anna de Burca (Genomics England Curator)

    Group: NHS Genomic Medicine Centre
    Workplace: NHS clinical service

  • Ivone Leong (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Julia Baptista (Royal Devon and Exeter NHS Foundation Trust)

    Group: Other NHS organisation
    Workplace: NHS diagnostic lab

  • Dmitrijs Rots (Children's Clinical University Hospital)

    Group: Other
    Workplace: Research lab

  • Catherine Snow (Genomics England)

    Group: Other
    Workplace: Other

  • Lothar Schlueter (PTC Therapeutics)

    Group: Other
    Workplace: Industry

  • Arina Puzriakova (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Andžela Lazdāne (Children's Clinical University Hospital of Latvia)

    Group: Other
    Workplace: Other diagnostic lab

  • Achchuthan Shanmugasundram (Genomics England Curator)

    Group: Other
    Workplace: Other

  • Hannah Knight (NIHR BioResource - University of Cambridge)

    Group: Other
    Workplace: Research lab

938 Entities

799 reviewed, 737 green

List Entity Reviews Mode of inheritance Details
938 Entitiess
Green Green List (high evidence)
AARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only)
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 8, 614096
  • infantile mitochondrial cardiomyopathy
Tags
Green Green List (high evidence)
AASS
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperlysinemia, OMIM:238700
  • Hyperlysinemia (disease), MONDO:0009388
Tags
Green Green List (high evidence)
ABAT
5 reviews
3 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 613163
  • GABA transaminase deficiency (Disorders of neurotransmitter metabolism, gamma-aminobutyrate)
  • mtDNA depletion syndrome
Tags
Green Green List (high evidence)
ABCA1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Tangier disease (Disorders of high density lipoprotein metabolism)
Tags
Green Green List (high evidence)
ABCB11
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Progressive familial intrahepatic cholestasis type 2 (Disorders of bile acid metabolism and transport)
  • Cholestasis, benign recurrent intrahepatic, 2 605479
  • Cholestasis, progressive familial intrahepatic 2 601847
Tags
Green Green List (high evidence)
ABCB4
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Gallbladder disease 1 600803 AD, AR
  • Cholestasis, progressive familial intrahepatic 3 602347 AR
  • Progressive familial intrahepatic cholestasis type 3 (Disorders of bile acid metabolism and transport)
  • Cholestasis, intrahepatic, of pregnancy, 3 614972 AD, AR
Tags
Green Green List (high evidence)
ABCB7
5 reviews
1 green 1 red
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Anemia, sideroblastic, with ataxia OMIM:301310
  • X-linked sideroblastic anemia with ataxia MONDO:0010524
Tags
Green Green List (high evidence)
ABCD1
2 reviews
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • X-linked adrenoleukodystrophy (Disorders of peroxisomal alpha-, beta and omega-oxidation)
  • Adrenoleukodystrophy 300100
Tags
Green Green List (high evidence)
ABCD4
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblJ type
Tags
Green Green List (high evidence)
ABCG5
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sitosterolaemia (Inherited hypercholesterolaemias)
  • Familial hypercholesterolaemia
Tags
Green Green List (high evidence)
ABCG8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sitosterolaemia (Inherited hypercholesterolaemias)
  • Familial hypercholesterolaemia
Tags
Green Green List (high evidence)
ABHD12
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hereditary ataxia
  • Posterior segment abnormalities
  • Congenital hearing impairment (profound/severe)
  • PHARC syndrome (Disorders of complex lipid synthesis)
Tags
Green Green List (high evidence)
ABHD5
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Chanarin-Dorfman syndrome 275630
  • Neutral lipid storage disease (Disorders of lipolysis)
Tags
Green Green List (high evidence)
ACAD8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Isobutyric aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
ACAD9
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency due to ACAD9 deficiency
  • ACAD9 deficiency, 611126
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
ACADM
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Acyl-CoA dehydrogenase, medium chain, deficiency of
  • Medium - chain acyl CoA dehydrogenase deficiency (Disorders of mitochondrial fatty acid oxidation)
Tags
Green Green List (high evidence)
ACADS
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Acyl-CoA dehydrogenase, short-chain, deficiency of
Tags
Green Green List (high evidence)
ACADSB
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 2-methylbutyrylglycinuria 610006
  • 2-Methylbutyric aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
ACADVL
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • VLCAD deficiency
  • Very long - chain acyl CoA dehydrogenase deficiency (Disorders of mitochondrial fatty acid oxidation)
Tags
Green Green List (high evidence)
ACAT1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cytosolic acetoacetyl-CoA thiolase deficiency (Disorders of ketone body metabolism)
  • Fasting intolerance with acidosis, ? residual neurological problems
  • 3-Oxothiolase deficiency (Organic acidurias)
Tags
Green Green List (high evidence)
ACO2
5 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Infantile cerebellar-retinal degeneration, 614559
Tags
Green Green List (high evidence)
ACOX1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Peroxisomal acyl-CoA oxidase deficiency, OMIM:264470
Tags
Green Green List (high evidence)
ACSF3
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined methylmalonic and malonic aciduria (Organic acidurias)
  • Combined malonic and methylmalonic aciduria
Tags
Green Green List (high evidence)
ACY1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Aminoacylase 1 deficiency (Organic acidurias)
Tags
Green Green List (high evidence)
ADA
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Severe combined immunodeficiency due to ADA deficiency, OMIM:102700
  • Adenosine deaminase deficiency, partial, OMIM:102700
Tags
Green Green List (high evidence)
ADAR
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Aicardi-Goutieres syndrome 6, OMIM:615010
  • Dyschromatosis symmetrica hereditaria, OMIM:127400
Tags
Green Green List (high evidence)
ADSL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Epileptic encephalopathy
  • Adenylosuccinate lyase deficiency (Disorders of purine metabolism)
Tags
Green Green List (high evidence)
AFG3L2
4 reviews
2 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Optic atrophy 12, OMIM:618977
  • Spinocerebellar ataxia 28, OMIM:610246
  • Spastic ataxia 5, autosomal recessive, OMIM:614487
Tags
Green Green List (high evidence)
AGA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Aspartylglucosaminuria
Tags
Green Green List (high evidence)
AGK
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of mitochondrial membrane lipids (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial DNA depletion syndrome 10
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Acylglycerol kinase deficiency (Senger syndrome) (Disorders of complex lipid synthesis)
  • Sengers syndrome, 212350
  • Sengers syndrome 212350
  • Disorders of mitochondrial lipid metabolism
  • Cataract 38, autosomal recessive, 614691
Tags
Green Green List (high evidence)
AGL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease type III, Cori (Glycogen storage disorders)
  • Glycogen storage disease IIIb, 232400
  • Glycogen Storage Disorders- Liver
  • Glycogen Storage Disease
  • myopathy, cardiomyopathy and neuropathy possible but mile hepatomegaly and fasting intolerance
  • Glycogen Storage Disease Type III
  • Glycogen Storage Disorders- Muscle
  • Glycogen storage disease IIIa, 232400
Tags
Green Green List (high evidence)
AGPS
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Rhizomelic chondrodysplasia punctata, type 3 600121
  • Rhizomelic chondrodysplasia punctata type 3 (Peroxisomal disorders)
Tags
Green Green List (high evidence)
AGXT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Primary hyperoxaluria type I (Other peroxisomal disorders)
  • Primary hyperoxaluria type I (Disorders of glyoxylate metabolism)
  • Hyperoxaluria, primary, type 1
Tags
Green Green List (high evidence)
AHCY
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase, 613752
  • Disorders of the metabolism of sulphur amino acids
Tags
  • treatable
Green Green List (high evidence)
AIFM1
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of mitochondrial apoptosis
  • Cowchock syndrome, 310490
  • Miscellaneous disorders/unknown function (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Combined oxidative phosphorylation deficiency 6, 300816
Tags
Green Green List (high evidence)
AKR1D1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?4-3-oxysterol 5?-reductase deficiency (Disorders of bile acid biosynthesis)
  • Bile acid synthesis defect, congenital, 2 235555
Tags
Green Green List (high evidence)
ALAD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • {Lead poisoning, susceptibility to} 612740
  • Acute hepatic porphyria (Acute neuropathic porphyrias)
  • Porphyria, acute hepatic 612740
Tags
Green Green List (high evidence)
ALAS2
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Anemia, sideroblastic, 1, OMIM:300751
  • Protoporphyria, erythropoietic, X-linked, OMIM:300752
Tags
Green Green List (high evidence)
ALDH18A1
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cutis laxa, autosomal dominant 3 OMIM:616603
  • cutis laxa, autosomal dominant 3 MONDO:0014706
  • Cutis laxa, autosomal recessive, type IIIA OMIM:219150
  • ALDH18A1-related de Barsy syndrome MONDO:0009053
  • Spastic paraplegia 9A, autosomal dominant OMIM:601162
  • hereditary spastic paraplegia 9A MONDO:0011006
  • Spastic paraplegia 9B, autosomal recessive OMIM:616586
  • autosomal recessive complex spastic paraplegia type 9B MONDO:0014702
Tags
Green Green List (high evidence)
ALDH3A2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sjogren-Larsson syndrome, OMIM:270200
Tags
Green Green List (high evidence)
ALDH4A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Hyperprolinaemia type II (Disorders of ornithine or proline metabolism)
  • Hyperprolinemia, type II
Tags
Green Green List (high evidence)
ALDH5A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Succinic semialdehyde dehydrogenase deficiency OMIM:271980
  • succinic semialdehyde dehydrogenase deficiency MONDO:0010083
Tags
Green Green List (high evidence)
ALDH6A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonate semialdehyde dehydrogenase deficiency 614105
  • 3-Hydroxyisobutyric aciduria (Organic acidurias)
  • Methylmalonate semialdehyde dehydrogenase deficiency (Organic acidurias)
Tags
Green Green List (high evidence)
ALDH7A1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Epilepsy, pyridoxine-dependent
Tags
Green Green List (high evidence)
ALDOA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Aldolase A deficiency (Glycogen storage disorders)
  • Glycogen storage disease XII, 611881
Tags
Green Green List (high evidence)
ALDOB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • hereditary fructose intolerance
  • Hereditary fructose intolerance (Disorders of fructose metabolism)
  • acidosis with ketototic hypoglycaemia often hepatomegaly in acute presentation
Tags
Green Green List (high evidence)
ALG1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mannosyltransferase 1 deficiency (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Ik 608540
Tags
Green Green List (high evidence)
ALG11
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ALG11-CDG (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Ip 613661
Tags
Green Green List (high evidence)
ALG12
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Ig 607143
  • Mannosyltransferase 8 deficiency (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
ALG14
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Myasthenic syndrome, congenital, 15, without tubular aggregates 616227
  • Congenital myasthenic sydrome (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
ALG3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mannosyltransferase 6 deficiency ALG3-CDG (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Id 601110
  • Mannosyltransferase 6 deficiency (Disorders of protein N-glycosylation)
  • ALG3-CDG (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
ALG6
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Ic 603147
  • Glucosyltransferase 1 deficiency (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
ALG8
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glucosyltransferase 2 deficiency (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Ih 608104
Tags
Green Green List (high evidence)
ALG9
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mannosyltransferase 7-9 deficiency (Disorders of protein N-glycosylation)
  • ALG9-CDG (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Il 608776
Tags
Green Green List (high evidence)
ALPL
1 review
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypophosphatasia, adult 146300
  • Hypophosphatasia, childhood 241510
  • Hypophosphatasia, infantile241500
  • Odontohypophosphatasia 146300
Tags
Green Green List (high evidence)
AMACR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Alpha-methylacyl-CoA racemase deficiency
  • Alpha-methylacyl-CoA racemase deficiency (Disorders of peroxisomal alpha-, beta and omega-oxidation)
Tags
Green Green List (high evidence)
AMN
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intrinsic factor receptor deficiency due to AMN mutations (Disorders of cobalamin absorption, transport and metabolism)
  • Proteinuric renal disease
  • Unexplained kidney failure in young people
Tags
Green Green List (high evidence)
AMT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycine encephalopathy
Tags
Green Green List (high evidence)
ANO10
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Spinocerebellar ataxia, autosomal recessive 10, 613728
Tags
Green Green List (high evidence)
APOA1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Amyloidosis, 3 or more types OMIM:105200
  • familial visceral amyloidosis MONDO:0007099
  • ApoA-I and apoC-III deficiency, combined OMIM:618463
  • Hypoalphalipoproteinemia, primary, 2, with or without corneal clouding OMIM:618463
  • hypoalphalipoproteinemia, primary, 2 MONDO:0032766
Tags
Green Green List (high evidence)
APOA5
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperchylomicronemia, late-onset OMIM:144650
  • hyperlipoproteinemia type V MONDO:0007762
  • {Hypertriglyceridemia, susceptibility to} OMIM:145750
  • hypertriglyceridemia, familial MONDO:0007788
Tags
Green Green List (high evidence)
APOB
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypercholesterolemia, familial, 2 OMIM:144010
  • hypercholesterolemia, autosomal dominant, type B MONDO:0007751
  • Hypobetalipoproteinemia OMIM:615558
  • familial hypobetalipoproteinemia 1 MONDO:0014252
Tags
Green Green List (high evidence)
APOC2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperlipoproteinemia, type Ib 207750
  • Familial apolipoprotein C - II deficiency (Familial chylomicronaemia, Inherited hypercholesterolaemias)
Tags
Green Green List (high evidence)
APOE
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Familial dysbetalipoproteinaemia (Inherited mixed hyperlipidaemias)
  • Hyperlipoproteinemia, type III 617347
  • Sea-blue histiocyte disease 269600
  • Lipoprotein glomerulopathy 611771
Tags
Green Green List (high evidence)
APOPT1
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 17, OMIM:619061
  • Isolated complex IV deficiency
Tags
  • new-gene-name
Green Green List (high evidence)
APRT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Adenine phosphoribosyltransferase deficiency 614723
  • Adenine phosphoribosyl transferase deficiency (Disorders of purine metabolism)
Tags
Green Green List (high evidence)
APTX
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Secondary CoQ10 deficiency (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Ataxia with oculomotor apraxia 1
  • Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920
  • Disorders of ubiquinone metabolism and biosynthesis
Tags
Green Green List (high evidence)
ARG1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Argininaemia (Urea cycle disorders and inherited hyperammonaemias)
  • Argininemia, OMIM:207800
Tags
Green Green List (high evidence)
ARSA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Metachromatic leukodystrophy
Tags
Green Green List (high evidence)
ARSB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MUCOPOLYSACCHARIDOSIS TYPE 6
  • Mucopolysaccharidosis, Type VI
  • Mucopolysaccharidosis type VI (Maroteaux-Lamy), 253200
  • Mucopolysaccharidosis Type VI
  • MPS VI, Maroteaux - Lamy disease (MPS IV, Morquio disease)
Tags
Green Green List (high evidence)
ARSE
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
Phenotypes
  • Chondrodysplasia punctata, X-linked recessive 302950
Tags
  • new-gene-name
Green Green List (high evidence)
ASAH1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Spinal muscular atrophy with progressive myoclonic epilepsy 159950, Farber lipogranulomatosis 228000, Fetal hydrops, Intellectual disability
Tags
Green Green List (high evidence)
ASL
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Argininosuccinic aciduria, OMIM:207900
  • argininosuccinic aciduria, MONDO:0008815
Tags
Green Green List (high evidence)
ASPA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Canavan disease
Tags
Green Green List (high evidence)
ASS1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Citrullinaemia type1 (Urea cycle disorders and inherited hyperammonaemias)
  • Citrullinemia
Tags
Green Green List (high evidence)
ATAD3A
5 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Harel-Yoon syndrome, OMIM:617183
  • Pontocerebellar hypoplasia, hypotonia, and respiratory insufficiency syndrome, neonatal lethal, OMIM:618810
  • Lactic acidosis
  • Methylglutaconic aciduria
Tags
Green Green List (high evidence)
ATIC
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • AICAR transformylase deficiency (Disorders of purine metabolism)
Tags
Green Green List (high evidence)
ATP13A2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Kufor-Rakeb syndrome
Tags
Green Green List (high evidence)
ATP5A1
6 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 4, OMIM: 615228
  • Combined oxidative phosphorylation deficiency 22, OMIM: 616045
Tags
  • new-gene-name
Green Green List (high evidence)
ATP5D
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex V (ATP synthase) deficiency, 618120
Tags
  • new-gene-name
Green Green List (high evidence)
ATP5G3
5 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Dystonia, early-onset, and/or spastic paraplegia, OMIM:619681
Tags
  • new-gene-name
Green Green List (high evidence)
ATP5O
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 7, OMIM:620359
Tags
  • new-gene-name
Green Green List (high evidence)
ATP6AP1
0 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
Phenotypes
  • Immunodeficiency 47
Tags
Green Green List (high evidence)
ATP6V0A2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • V0 subunit A2 of vesicular H(+)-ATPase deficiency (Disorders of multiple glycosylation and other glycosylation pathways, V-ATPase deficiencies)
  • Cutis laxa, autosomal recessive, type IIA 21920
  • Wrinkly skin syndrome 278250
Tags
Green Green List (high evidence)
ATP7A
3 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Menkes disease
Tags
Green Green List (high evidence)
ATP7B
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Wilson disease
Tags
Green Green List (high evidence)
ATP8B1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cholestasis, progressive familial intrahepatic 1 211600
  • Cholestasis, benign recurrent intrahepatic 243300 AR
  • Cholestasis, intrahepatic, of pregnancy, 1 147480 AD
  • Byler disease (Disorders of bile acid metabolism and transport)
Tags
Green Green List (high evidence)
ATPAF2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 1, 604273
  • Complex V (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Diseases
  • Isolated complex V deficiency
  • Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type
Tags
Green Green List (high evidence)
AUH
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-methylglutaconic aciduria, type I
  • Methylglutaconic aciduria type I (Organic acidurias)
Tags
Green Green List (high evidence)
B3GALNT2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 11
Tags
Green Green List (high evidence)
B3GALT6
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Ehlers-Danlos syndrome, progeroid type, 2
Tags
Green Green List (high evidence)
B3GAT3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple joint dislocations, short stature, craniofacial dysmorphism, with or without congenital heart defects 245600
  • B3GAT3-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
B3GLCT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Peters-plus syndrome 261540
  • O-fucose-specific beta-1,3-N-glucosyltransferase deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • O-fucose-specific beta-1,3-N-glucosyltransferase deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
B4GALNT1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Spastic paraplegia 26, autosomal recessive, OMIM:609195
  • Hereditary spastic paraplegia 26, MONDO:0012213
Tags
Green Green List (high evidence)
B4GALT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IId, OMIM:607091
Tags
Green Green List (high evidence)
B4GALT7
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ehlers-Danlos syndrome with short stature and limb anomalies 130070
  • B4GALT7-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies, Disorders of protein O-glycosylation, O-xylosylglycan synthesis deficiencies)
  • B4GALT7-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Beta-1,4-galactosyltransferase 7 deficiency (Disorders of protein O-glycosylation, O-xylosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
BAAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypercholanemia, familial
Tags
Green Green List (high evidence)
BCAT2
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Branched-chain amino acid transferase (Disorder of branched-chain amino acid metabolism not classified as organic aciduria)
Tags
  • treatable
Green Green List (high evidence)
BCKDHA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Maple syrup urine disease, type Ia
  • BCKD E1 alpha subunit of deficiency (Maple syrup urine disease, disorder of branched-chain amino acid metabolism not classified as organic aciduria)
Tags
Green Green List (high evidence)
BCKDHB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Maple syrup urine disease, type Ib
  • BCKD E1 beta subunit of deficiency (Maple syrup urine disease, disorder of branched-chain amino acid metabolism not classified as organic aciduria)
Tags
Green Green List (high evidence)
BCKDK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Branched-chain ketoacid dehydrogenase kinase deficiency
Tags
Green Green List (high evidence)
BCS1L
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Complex III (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Diseases
  • Isolated complex III deficiency
  • Mitochondrial Respiratory Chain Complex III Deficiency
  • Mitochondrial complex III deficiency, nuclear type 1, 124000
  • Leigh syndrome, 256000
  • Bjornstad syndrome, 262000
  • GRACILE syndrome, 603358
Tags
Green Green List (high evidence)
BOLA3
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperglycinaemia, non-ketotic (Baker (2014) Brain 137,366)
  • Defective Fe-S/lipoic acid biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple mitochondrial dysfunctions syndrome 2, 614299
  • Multiple Mitochondrial Dysfunctions Syndrome
  • Disorders of iron homeostasis
Tags
Green Green List (high evidence)
BTD
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Biotinidase deficiency (Disorders of biotin metabolism)
  • Biotinidase deficiency
  • lactic acidosis with seizures and eczema,immune deficiency
Tags
Green Green List (high evidence)
C12orf65
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 7, OMIM:613559
  • Spastic paraplegia 55, autosomal recessive, OMIM:615035
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
  • new-gene-name
Green Green List (high evidence)
C19orf12
7 reviews
1 green 3 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Spastic paraplegia 43, autosomal recessive, OMIM:615043
  • Neurodegeneration with brain iron accumulation 4, OMIM: 614298
Tags
Green Green List (high evidence)
C19orf70
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 37, 618329
Tags
  • new-gene-name
Green Green List (high evidence)
C1QBP
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review
  • Expert Review Green
  • Literature
Phenotypes
  • Combined oxidative phosphorylation deficiency 33 617713
Tags
Green Green List (high evidence)
CA5A
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperammonemia due to carbonic anhydrase VA deficiency
  • Hyperammonemia (Urea cycle disorders and inherited hyperammonaemias)
Tags
Green Green List (high evidence)
CARS2
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • No OMIM phenotype
  • Combined oxidative phosphorylation deficiency 27 616672
Tags
Green Green List (high evidence)
CAT
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Acatalasaemia (Other peroxisomal disorders)
  • Acatalasemia, 614097
Tags
Green Green List (high evidence)
CBS
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Homocystinuria, B6-responsive and nonresponsive types
Tags
Green Green List (high evidence)
CCDC115
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation, type IIo 616828
Tags
Green Green List (high evidence)
CHCHD10
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
Phenotypes
  • Frontotemporal dementia and/or amyotrophic lateral sclerosis 2
  • ?Myopathy, isolated mitochondrial, autosomal dominant, 616209
  • Spinal muscular atrophy, Jokela type
Tags
Green Green List (high evidence)
CHKB
6 reviews
2 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Choline kinase deficiency (Disorders of complex lipid synthesis)
  • Muscular dystrophy, congenital, megaconial type, 602541
Tags
Green Green List (high evidence)
CHST14
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ehlers-Danlos syndrome, musculocontractural type 1 601776
  • CHST14-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
CHST3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Spondyloepiphyseal dysplasia with congenital joint dislocations 143095
  • CHST3-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
CHST6
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • CHST6-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Macular corneal dystrophy 217800
Tags
Green Green List (high evidence)
CHSY1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Temtamy preaxial brachydactyly syndrome 605282
  • CHSY1-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
CISD2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Wolfram syndrome 2 604928
Tags
Green Green List (high evidence)
CLDN16
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesemia 3, renal 248250
Tags
Green Green List (high evidence)
CLDN19
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesemia 5, renal, with ocular involvement 248190
Tags
Green Green List (high evidence)
CLN3
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 3, 204200
Tags
Green Green List (high evidence)
CLN5
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 5 OMIM:256731
  • neuronal ceroid lipofuscinosis 5 MONDO:0009745
Tags
Green Green List (high evidence)
CLN6
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 6, 601780
  • Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, 204300
Tags
Green Green List (high evidence)
CLN8
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 8
Tags
Green Green List (high evidence)
CLPB
5 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • 3-methylglutaconic aciduria, type VIIB, autosomal recessive, OMIM:616271
  • 3-methylglutaconic aciduria, type VIIA, autosomal dominant, OMIM: 619835
  • Neutropenia, severe congenital, 9, autosomal dominant, OMIM: 619813
Tags
Green Green List (high evidence)
CLPP
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Perrault syndrome 3, 614129
Tags
Green Green List (high evidence)
CNNM2
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesaemia type 6, renal (Disorder of magnesium metabolism)
  • Hypomagnesemia 6, renal 613882
  • Hypomagnesemia, seizures, and mental retardation 616418
Tags
Green Green List (high evidence)
COA6
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 13, OMIM:616501
Tags
Green Green List (high evidence)
COA7
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Spinocerebellar ataxia, autosomal recessive, with axonal neuropathy 3 OMIM:618387
  • spinocerebellar ataxia, autosomal recessive, with axonal neuropathy 3 MONDO:0020770
Tags
Green Green List (high evidence)
COG1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Component of COG complex 1 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
  • Congenital disorder of glycosylation, type IIg 611209
Tags
Green Green List (high evidence)
COG4
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Component of COG complex 4 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
  • Congenital disorder of glycosylation, type IIj 613489
Tags
Green Green List (high evidence)
COG5
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIi 613612
  • Component of COG complex 5 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
Tags
Green Green List (high evidence)
COG6
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Component of COG complex 6 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
  • Shaheen syndrome 615328
  • Congenital disorder of glycosylation, type IIl 614576
Tags
Green Green List (high evidence)
COG7
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Component of COG complex 7 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
  • Congenital disorder of glycosylation, type IIe 608779
Tags
Green Green List (high evidence)
COG8
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIh 611182
  • Component of COG complex 8 deficiency (Disorders of multiple glycosylation and other glycosylation pathways, conserved oligomeric Golgi (COG) complex deficiency)
Tags
Green Green List (high evidence)
COQ2
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 1, OMIM:607426
Tags
Green Green List (high evidence)
COQ4
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 7, OMIM:616276
Tags
Green Green List (high evidence)
COQ6
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 6, 614650
  • Steroid-resistant nephrotic syndrome
  • Disorders of CoQ10 biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of ubiquinone metabolism and biosynthesis
Tags
Green Green List (high evidence)
COQ7
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • ?Coenzyme Q10 deficiency, primary, 8 616733
Tags
Green Green List (high evidence)
COQ8A
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency
  • Disorders of CoQ10 biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of ubiquinone metabolism and biosynthesis
  • Coenzyme Q10 deficiency, primary, 4, 612016
Tags
Green Green List (high evidence)
COQ8B
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Nephrotic syndrome, type 9
Tags
Green Green List (high evidence)
COQ9
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 5, 614654
  • Coenzyme Q10 deficiency
  • Disorders of CoQ10 biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of ubiquinone metabolism and biosynthesis
Tags
Green Green List (high evidence)
COX10
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 3, OMIM:619046
  • Encephalopathy, progressive mitochondrial, with proximal renal tubulopathy due to cytochrome coxidase deficiency
Tags
Green Green List (high evidence)
COX14
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, 220110
  • Isolated complex IV deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
Tags
Green Green List (high evidence)
COX15
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 6, OMIM:615119
Tags
Green Green List (high evidence)
COX20
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, 220110
  • Isolated complex IV deficiency
  • Complex IV Mitochondrial respiratory chain disorders caused by nuclear variants only
  • OXPHOS assembly factors
Tags
Green Green List (high evidence)
COX6A1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Charcot-Marie-Tooth disease, recessive intermediate D, 616039
Tags
Green Green List (high evidence)
COX6B1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 7, OMIM:619051
Tags
Green Green List (high evidence)
COX7B
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Isolated complex IV deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Linear skin defects with multiple congenital anomalies
  • Aplasia cutis congenita, reticulolinear, with microcephaly, facial dysmorphism and other congenital anomalies, 300887
  • MICROPHTHALMIA WITH LINEAR SKIN LESIONS
Tags
Green Green List (high evidence)
CP
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cerebellar ataxia, 604290
  • Hemosiderosis, systemic, due to aceruloplasminemia, 604290
Tags
Green Green List (high evidence)
CPOX
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Harderoporphyria 121300
  • Coproporphyria 121300
  • Hereditary coproporphyria (Acute neuropathic porphyrias)
Tags
Green Green List (high evidence)
CPS1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Carbamoylphosphate synthetase I deficiency
  • Carbamoylphosphate synthetase I deficiency (Urea cycle disorders and inherited hyperammonaemias)
Tags
Green Green List (high evidence)
CPT1A
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Carnitine palmitoyltransferase I (CPTI) deficiency (Disorders of carnitine transport and the carnitine cycle)
  • CPT deficiency, hepatic, type IA
Tags
Green Green List (high evidence)
CPT2
4 reviews
1 green 1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • CPT II deficiency, infantile, OMIM:600649
  • CPT II deficiency, lethal neonatal, OMIM:608836
  • CPT II deficiency, myopathic, stress-induced, OMIM:255110
  • Carnitine palmitoyltransferase II (CPTII) deficiency (Disorders of carnitine transport and the carnitine cycle)
Tags
Green Green List (high evidence)
CRLS1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 57, OMIM:620167
Tags
Green Green List (high evidence)
CSGALNACT1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation
  • Skeletal dysplasia, mild, with joint laxity and advanced bone age OMIM:618870
  • skeletal dysplasia, mild, with joint laxity and advanced bone age MONDO:0030029
Tags
Green Green List (high evidence)
CTH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cystathioninuria, 219500
Tags
Green Green List (high evidence)
CTNS
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cystinosis, atypical nephropathic
Tags
Green Green List (high evidence)
CTSA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Galactosialidosis
Tags
Green Green List (high evidence)
CTSC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Haim-Munk syndrome 245010
  • Papillon-Lefevre syndrome 245000
  • Periodontitis 1, juvenile 170650
Tags
Green Green List (high evidence)
CTSD
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 10, 610127
Tags
Green Green List (high evidence)
CTSK
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pycnodysostosis
Tags
Green Green List (high evidence)
CUBN
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intrinsic factor receptor deficiency due to CUBN mutations (Disorders of cobalamin absorption, transport and metabolism)
  • Megaloblastic anemia-1, Finnish type
  • Proteinuric renal disease
  • Unexplained kidney failure in young people
Tags
Green Green List (high evidence)
CYC1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Isolated complex III deficiency
  • Mitochondrial complex III deficiency, nuclear type 6, 615453
Tags
Green Green List (high evidence)
CYP27A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cerebrotendinous xanthomatosis, 213700
Tags
Green Green List (high evidence)
CYP7B1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Bile acid synthesis defect, congenital, 3 613812
  • Spastic paraplegia 5A, autosomal recessive 270800
Tags
  • treatable
Green Green List (high evidence)
D2HGDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • D-2-hydroxyglutaric aciduria
Tags
Green Green List (high evidence)
DARS
7 reviews
1 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hypomyelination with brainstem and spinal cord involvement and leg spasticity
Tags
  • new-gene-name
Green Green List (high evidence)
DARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
DBH
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dopamine beta-hydroxylase deficiency
Tags
Green Green List (high evidence)
DBT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydrolipoamide branched chain transacylase deficiency (Maple syrup urine disease, disorder of branched-chain amino acid metabolism not classified as organic aciduria)
  • Maple syrup urine disease, type II
Tags
Green Green List (high evidence)
DCXR
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • [Pentosuria] 260800
Tags
Green Green List (high evidence)
DDC
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Aromatic L-amino acid decarboxylase deficiency, OMIM:608643
  • Aromatic L-amino acid decarboxylase deficiency, MONDO:0012084
Tags
Green Green List (high evidence)
DGUOK
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Deoxyguanosine kinase deficiency (Disorders of purine metabolism)
  • Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), 251880
  • Mitochondrial DNA Depletion Syndrome
  • Disorders of mitochondrial DNA maintenance and integrity
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
DHCR24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Desmosterolosis 602398
Tags
Green Green List (high evidence)
DHCR7
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • IUGR and IGF abnormalities
  • Smith - Lemli - Opitz syndrome (Disorders of sterol biosynthesis)
  • Disorders of sex development
  • Cataracts
Tags
Green Green List (high evidence)
DHFR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydrofolate reductase deficiency (Disorders of folate metabolism and transport)
  • Megaloblastic anemia due to dihydrofolate reductase deficiency
Tags
Green Green List (high evidence)
DHODH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Miller syndrome 263750
Tags
Green Green List (high evidence)
DHTKD1
7 reviews
1 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 2-Oxoadipic aciduria (Disorders of histidine, tryptophan or lysine metabolism)
  • 2-Aminoadipic aciduria (Disorders of histidine, tryptophan or lysine metabolism)
  • 2-aminoadipic and 2-oxoadipic aciduria, 204750
Tags
Green Green List (high evidence)
DLAT
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydrolipoyl transacetylase deficiency (Disorders of pyruvate metabolism)
  • Pyruvate dehydrogenase E2 deficiency, 245348
Tags
Green Green List (high evidence)
DLD
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydrolipoyl dehydrogenase deficiency (Disorders of pyruvate metabolism)
  • Leigh syndrome
  • Dihydrolipoamide dehydrogenase deficiency, 246900
Tags
Green Green List (high evidence)
DMPK_CTG
STR
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Myotonic dystrophy 1, OMIM:160900
Tags
  • STR
Green Green List (high evidence)
DNA2
3 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
Phenotypes
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant, 6
  • 615156
  • Disorders of mitochondrial DNA maintenance and integrity
Tags
Green Green List (high evidence)
DNAJC12
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hyperphenylalaninemia, mild, non-BH4-deficient, 617384
Tags
Green Green List (high evidence)
DNAJC19
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-methylglutaconic aciduria, type V, 610198
  • Disorders of the mitochondrial import system
  • 3-methylglutaconic aciduria, type V
Tags
Green Green List (high evidence)
DNAJC5
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 4, Parry type, 162350
Tags
Green Green List (high evidence)
DNM1L
3 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Encephalopahty, lethal, due to defective mitochondrial peroxisomal fission, 614388
  • Encephalopahty, lethal, due to defective mitochondrial peroxisomal fission
  • Disorders of mitochondrial dynamics, fusion and fission (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
DNM2
3 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Centronuclear myopathy 1 160150
  • Charcot-Marie-Tooth disease, axonal type 2M 606482
  • Charcot-Marie-Tooth disease, dominant intermediate B 606482
Tags
Green Green List (high evidence)
DOLK
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Im 610768
  • Dolichol kinase deficiency (Disorders of multiple glycosylation and other glycosylation pathways)
Tags
Green Green List (high evidence)
DPAGT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Myasthenic syndrome, congenital, 13, with tubular aggregates 614750
  • UDP-GlcNAc:Dol-P-GlcNac-P transferase deficiency (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Ij 608093
Tags
Green Green List (high evidence)
DPM1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Ie, OMIM:608799
  • GDP-Man:Dol-P mannosyltransferase deficiency (Disorders of multiple glycosylation and other glycosylation pathways)
Tags
Green Green List (high evidence)
DPM2
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation, type Iu, OMIM:615042
Tags
Green Green List (high evidence)
DPM3
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 15 612937
Tags
Green Green List (high evidence)
DPYD
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydropyrimidine dehydrogenase deficiency 274270
  • Dihydropyrimidine dehydrogenase deficiency (Disorders of pyrimidine metabolism)
Tags
Green Green List (high evidence)
DPYS
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dihydropyrimidinuria, OMIM:222748
  • Dihydropyrimidinase deficiency (Disorders of pyrimidine metabolism)
Tags
Green Green List (high evidence)
DYM
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Encephalopahty, lethal, due to defective mitochondrial peroxisomal fission, 614388
  • Dyggve-Melchior-Clausen disease, 223800
  • Smith-McCort dysplasia, 607326
Tags
Green Green List (high evidence)
EARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 12, 614924
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Green Green List (high evidence)
EBP
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MEND syndrome 300960 XLR
  • Chondrodysplasia punctata, X-linked dominant 302960 XLD
  • X-linked dominant chondrodysplasia punctata 2 (Disorders of sterol biosynthesis)
Tags
Green Green List (high evidence)
ECHS1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial short-chain enoyl-CoA hydratase 1 deficiency, OMIM:616277
Tags
Green Green List (high evidence)
EHBP1L1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • non-immune hydrops fetalis MONDO:0009369
Tags
  • gene-checked
Green Green List (high evidence)
ELAC2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • infantile hypertrophic cardiomyopathy, lactic acidosis, and isolated complex I deficiency
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 17, 615440
Tags
Green Green List (high evidence)
ENO3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Glycogen storage disease XIII
Tags
Green Green List (high evidence)
EOGT
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Adams-Oliver syndrome 4 OMIM:615297
  • Adams-Oliver syndrome 4 MONDO:0014124
Tags
Green Green List (high evidence)
EPG5
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Vici syndrome, 242840
  • IMMUNODEFICIENCY WITH CLEFT LIP/PALATE, CATARACT, HYPOPIGMENTATION, AND ABSENT CORPUS CALLOSUM
Tags
Green Green List (high evidence)
EPM2A
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Epilepsy, progressive myoclonic 2A (Lafora)
Tags
Green Green List (high evidence)
ETFA
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutaric acidemia IIA, OMIM:231680
  • multiple acyl-CoA dehydrogenase deficiency, MONDO:0009282
Tags
Green Green List (high evidence)
ETFB
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutaric acidemia IIB, OMIM:231680
  • multiple acyl-CoA dehydrogenase deficiency, MONDO:0009282
Tags
Green Green List (high evidence)
ETFDH
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Secondary CoQ10 deficiency (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • GLUTARIC ACIDURIA TYPE 2C
  • Glutaric acidemia IIC
  • Disorders of ubiquinone metabolism and biosynthesis
  • ETF-ubiquinone oxidoreductase deficiency (Disorders of mitochondrial fatty acid oxidation)
Tags
Green Green List (high evidence)
ETHE1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ethylmalonic encephalopathy, 602473
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Isolated complex IV deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Ethylmalonic encephalopathy
Tags
Green Green List (high evidence)
EXT1
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple exostoses type I (Disorders of protein O-glycosylation, O-xylosylglycan synthesis deficiencies)
  • Exostoses, multiple, type 1 133700
Tags
Green Green List (high evidence)
EXT2
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple exostoses type II (Disorders of protein O-glycosylation, O-xylosylglycan synthesis deficiencies)
  • Exostoses, multiple, type 2 133701
  • ?Seizures, scoliosis, and macrocephaly syndrome 616682
Tags
Green Green List (high evidence)
FA2H
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Fatty acid 2-hydroxylase deficiency (Disorders of complex lipid synthesis)
  • Early onset dystonia
  • Neurodegeneration with brain iron accumulation (NBIA) (Disorder of iron metabolism)
  • Hereditary spastic paraplegia
Tags
Green Green List (high evidence)
FAH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Tyrosinemia, type I
Tags
Green Green List (high evidence)
FARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Combined oxidative phosphorylation deficiency 14, 614946
Tags
Green Green List (high evidence)
FASTKD2
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 44, OMIM:618855
Tags
Green Green List (high evidence)
FBP1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Glycogen Storage Disorders- Liver
  • Fructose-1,6-bisphosphatase deficiency (Disorders of gluconeogenesis)
Tags
Green Green List (high evidence)
FBXL4
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type) OMIM:615471
  • mitochondrial DNA depletion syndrome 13 MONDO:0014198
Tags
Green Green List (high evidence)
FDX2
6 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy OMIM:251900
  • mitochondrial myopathy, episodic, with optic atrophy and reversible leukoencephalopathy MONDO:0020714
Tags
Green Green List (high evidence)
FDXR
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review
  • Expert Review Green
  • Literature
Phenotypes
  • Auditory neuropathy and optic atrophy 617717
Tags
Green Green List (high evidence)
FECH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Protoporphyria, erythropoietic, 1 177000
Tags
Green Green List (high evidence)
FGFR2
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Antley-Bixler syndrome without genital anomalies or disordered steroidogenesis 207410
  • Apert syndrome 101200
  • Beare-Stevenson cutis gyrata syndrome 123790
  • Bent bone dysplasia syndrome 614592
  • Craniofacial-skeletal-dermatologic dysplasia 101600
  • Craniosynostosis, nonspecific
  • Crouzon syndrome 123500
  • Gastric cancer, somatic 613659
  • Jackson-Weiss syndrome 123150
  • LADD syndrome 149730
  • Pfeiffer syndrome 101600
  • Saethre-Chotzen syndrome 101400
  • Scaphocephaly and Axenfeld-Rieger anomaly
  • Scaphocephaly, maxillary retrusion, and mental retardation 609579
Tags
Green Green List (high evidence)
FH
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Fumarase deficiency, OMIM:606812
  • Disorders of the citric acid cycle
Tags
Green Green List (high evidence)
FKRP
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with or without mental retardation), type B, 5 606612
  • Fukutin-related protein deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 5 607155
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 5 613153
Tags
Green Green List (high evidence)
FKTN
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital without mental retardation), type B, 4 613152
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4 253800
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 4 611588
  • Fukutin deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
FLAD1
3 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Multiple acyl-CoA dehydrogenase deficiencies (MADDs)
Tags
Green Green List (high evidence)
FMO3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Trimethylaminuria (Disorders and variants of enzymes that oxidise xenobiotics other than cytochrome P450)
Tags
Green Green List (high evidence)
FOLR1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Neurodegeneration due to cerebral folate transport deficiency, 613068
  • Cerebral folate deficiency due to FOLR1 deficiency (Disorders of folate metabolism and transport)
Tags
Green Green List (high evidence)
FOXRED1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000Mitochondrial complex I deficiency, 252010
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
FTCD
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutamate formiminotransferase deficiency 229100
Tags
Green Green List (high evidence)
FUCA1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Fucosidosis, 230000
Tags
Green Green List (high evidence)
FUT8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation with defective fucosylation, 618005
Tags
Green Green List (high evidence)
FXN
7 reviews
3 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Friedreich ataxia OMIM:229300
  • Friedreich ataxia with retained reflexes OMIM:229300
  • Friedreich ataxia 1 MONDO:0100340
Tags
  • nucleotide-repeat-expansion
Green Green List (high evidence)
FXN_GAA
STR
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Friedreich ataxia OMIM:229300
  • Friedreich ataxia with retained reflexes OMIM:229300
  • Friedreich ataxia 1 MONDO:0100340
Tags
  • STR
Green Green List (high evidence)
G6PC
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease Ia, OMIM:232200
Tags
  • new-gene-name
Green Green List (high evidence)
G6PC3
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dursun syndrome
Tags
Green Green List (high evidence)
GAA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease II, 232300
Tags
Green Green List (high evidence)
GABRG2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
Phenotypes
  • Febrile seizures, familial, 8 611277
  • Epilepsy, generalized, with febrile seizures plus, type 3 611277
  • {Epilepsy, childhood absence, susceptibility to, 2} 607681
Tags
Green Green List (high evidence)
GALC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Krabbe disease, OMIM:245200
Tags
Green Green List (high evidence)
GALE
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Uridine diphosphate galactose-4-epimerase deficiency (Disorders of galactose metabolism)
  • Galactose epimerase deficiency, OMIM:230350
  • MONDO:0009257
Tags
Green Green List (high evidence)
GALK1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Galactokinase deficiency with cataracts, 230200
Tags
Green Green List (high evidence)
GALM
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
  • Literature
Phenotypes
  • Galactosemia IV, OMIM:618881
  • MONDO:0030105
Tags
Green Green List (high evidence)
GALNS
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MUCOPOLYSACCHARIDOSIS TYPE 4A
  • Mucopolysaccharidosis Type IVA
  • Mucopolysaccharidosis IVA, 253000
  • Mucopolysaccharidosis, Type IV
  • MPS IVA, Morquio A disease (MPS IV, Morquio disease)
Tags
Green Green List (high evidence)
GALNT2
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Congenital disorder of glycosylation, type IIt 618885
Tags
Green Green List (high evidence)
GALNT3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Polypeptide N-acetylgalactosaminyl transferase deficiency (Disorders of protein O-glycosylation, O-N-acetylgalactosaminylglycan synthesis deficiencies)
  • Tumoral calcinosis, hyperphosphatemic, familial 211900
Tags
Green Green List (high evidence)
GALT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Classical galactosaemia (Disorders of galactose metabolism)
  • Galactosemia
  • Cataracts
Tags
Green Green List (high evidence)
GAMT
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cerebral creatine deficiency syndrome 2 612736
Tags
Green Green List (high evidence)
GARS
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
Phenotypes
  • Charcot-Marie-Tooth disease, type 2D
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Neuropathy, distal hereditary motor, type VA
Tags
  • new-gene-name
Green Green List (high evidence)
GATM
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Arginine:glycine amidinotransferase deficiency (Mitochondrial respiratory chain disorders (caused by nuclear variants only), disorders of creatinine metabolism)
  • arginine:glycine amidinotransferase deficiency
  • Cerebral creatine deficiency syndrome 3, 612718
Tags
Green Green List (high evidence)
GBA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Gaucher disease, perinatal lethal, 608013
  • Gaucher disease, type III, 231000
  • Gaucher disease, type II, 230900
  • Gaucher disease, type I, 230800
  • Gaucher disease, type IIIC, 231005
  • Gaucher disease
  • Gaucher disease (Sphingolipidoses)
Tags
  • new-gene-name
Green Green List (high evidence)
GBE1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease IV, OMIM:232500
  • Polyglucosan body disease, adult form, OMIM:263570
Tags
Green Green List (high evidence)
GCDH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutaricaciduria, type I, 231670
Tags
Green Green List (high evidence)
GCH1
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dystonia, DOPA-responsive, with or without hyperphenylalaninemia
Tags
Green Green List (high evidence)
GCLC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Gamma-glutamylcysteine synthetase deficiency (Disorders of the gamma-glutamyl cycle)
  • Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency 230450
Tags
Green Green List (high evidence)
GCSH
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 7, OMIM:620423
  • Glycine encephalopathy
  • Transient neonatal hyperglycinemia
Tags
Green Green List (high evidence)
GDAP1
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Charcot-Marie-Tooth disease, axonal, type 2K, OMIM:607831
  • Charcot-Marie-Tooth disease, axonal, with vocal cord paresis, OMIM:607706
  • Charcot-Marie-Tooth disease, recessive intermediate, A, OMIM:608340
  • Charcot-Marie-Tooth disease, type 4A, OMIM:214400
Tags
Green Green List (high evidence)
GFER
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Disorders of the mitochondrial import system
  • Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay,613076
  • Disorders of mitochondrial protein import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
GFM1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 1, 609060
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
GFM2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 39, OMIM:618397
Tags
Green Green List (high evidence)
GFPT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Myasthenia, congenital, 12, with tubular aggregates(Disorders of protein N-glycosylation) 610542
  • Congenital myasthenic sydrome (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
GIF
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intrinsic factor deficiency
Tags
  • new-gene-name
Green Green List (high evidence)
GK
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycerol kinase deficiency 307030
Tags
Green Green List (high evidence)
GLA
0 reviews
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Fabry disease, cardiac variant, 301500
  • Fabry Disease
  • Fabry disease (Sphingolipidoses)
  • Fabry disease, 301500
Tags
Green Green List (high evidence)
GLB1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MUCOPOLYSACCHARIDOSIS TYPE 4B
  • MPS IVB, Morquio B disease (MPS IV, Morquio disease)
  • Mucopolysaccharidosis type IVB (Morquio), 253010
  • GM1-gangliosidosis (Sphingolipidoses)
  • GM1-gangliosidosis, type II, 230600
  • GM1-gangliosidosis, type III, 230650
  • Mucopolysaccharidosis, Type IV
  • Mucopolysaccharidosis Type IVB
  • GM1-gangliosidosis, type I, 230500
Tags
Green Green List (high evidence)
GLDC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycine encephalopathy, 605899
Tags
Green Green List (high evidence)
GLRA1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hyperekplexia, hereditary 1, 149400
Tags
Green Green List (high evidence)
GLRX5
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Defective Fe-S/lipoic acid biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Anemia, sideroblastic, pyridoxine-refractory, autosomal recessive, 205950
  • Disorders of iron homeostasis
Tags
Green Green List (high evidence)
GLS
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Global developmental delay, progressive ataxia, and elevated glutamine, OMIM:618412
  • Developmental and epileptic encephalopathy 71, OMIM:618328
  • ?Infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development, OMIM:618339
Tags
  • STR
  • watchlist_moi
Green Green List (high evidence)
GLUD1
5 reviews
1 green 2 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperinsulinemic hypoglycemia and hyperammonemia (Urea cycle disorders and inherited hyperammonaemias)
  • Hyperinsulinism-hyperammonemia syndrome, 606762
Tags
Green Green List (high evidence)
GLUL
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutamine deficiency, congenital 610015
Tags
Green Green List (high evidence)
GLYCTK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • D-glyceric aciduria 220120
  • D-glyceric aciduria (Disorders of serine, glycine or glycerate metabolism)
Tags
Green Green List (high evidence)
GM2A
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • GM2-gangliosidosis, AB variant, 272750
Tags
Green Green List (high evidence)
GMPPA
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Alacrima, achalasia, and mental retardation syndrome (MIM# 615510)
Tags
Green Green List (high evidence)
GMPPB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14 OMIM:615350
  • muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14 MONDO:0014140
  • Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14 OMIM:615351
  • muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14 MONDO:0014141
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14 OMIM:615352
  • autosomal recessive limb-girdle muscular dystrophy type 2T MONDO:0014142
Tags
Green Green List (high evidence)
GNE
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sialuria OMIM:269921
  • sialuria MONDO:0010028
  • Nonaka myopathy OMIM:605820
  • GNE myopathy MONDO:0011603
Tags
Green Green List (high evidence)
GNMT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycine N-methyltransferase deficiency 606664
Tags
Green Green List (high evidence)
GNPAT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Rhizomelic chondrodysplasia punctata type 2 (Peroxisomal disorders)
  • Rhizomelic chondrodysplasia punctata, type 2 222765
Tags
Green Green List (high evidence)
GNPTAB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucolipidosis, Type II
  • Mucolipidosis, Type III Alpha/Beta
  • Mucolipidosis III alpha/beta
  • Mucolipidosis II, I-cell disease (Other lysosomal disorders)
  • Mucolipidosis II alpha/beta
Tags
Green Green List (high evidence)
GNPTG
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucolipidosis III, Pseudo-Hurler polydystrophy (Other lysosomal disorders)
  • mucolipidpsis type III complementation group C
  • Mucolipidosis, Type III Gamma
  • Mucolipidosis III gamma
Tags
Green Green List (high evidence)
GNS
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MPS IIID, Sanfilippo D disease (Mucopolysaccharidoses)
  • Mucopolysaccharidosis Type IIID
  • Mucopolysaccharidosis type IIID, 252940
  • Mucopolysaccharidosis Type III
  • Mucopolysaccharidosis, Type III
Tags
Green Green List (high evidence)
GORAB
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Geroderma osteodysplasticum OMIM:231070
  • geroderma osteodysplastica MONDO:0009271
Tags
Green Green List (high evidence)
GPD1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hypertriglyceridemia, transient infantile, 614480
Tags
Green Green List (high evidence)
GPHN
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Molybdenum cofactor deficiency C, OMIM:615501
  • Mo cofactor deficiency, complementation group C (Disorders of molybdenum cofactor metabolism)
Tags
Green Green List (high evidence)
GRHPR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Primary hyperoxaluria type II (Disorders of glyoxylate metabolism)
  • Hyperoxaluria, primary, type II
Tags
Green Green List (high evidence)
GSS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutathione synthetase (GSS) deficiency
  • Glutathione synthetase deficiency 266130
  • Glutathione synthetase deficiency with 5-oxoprolinuria
  • Glutathione synthetase deficiency without 5-oxoprolinuria
  • Pyroglutamic aciduria
  • 5-oxoprolinuria
  • Hemolytic anemia due to glutathione synthetase deficiency 231900
  • Glutathione synthetase deficiency (Disorders of the gamma-glutamyl cycle)
  • Fanconi nephropathy
Tags
Green Green List (high evidence)
GTPBP3
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Combined oxidative phosphorylation deficiency 23 616198
Tags
Green Green List (high evidence)
GUSB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MUCOPOLYSACCHARIDOSIS TYPE 7
  • Mucopolysaccharidosis VII, 253220
  • MPS VII, Sly disease (MPS IV, Morquio disease)
  • Mucopolysaccharidosis Type VII
  • Mucopolysaccharidosis, Type VII
Tags
Green Green List (high evidence)
GYG1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Glycogen storage disease XV
Tags
Green Green List (high evidence)
GYS1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease 0, muscle
Tags
Green Green List (high evidence)
GYS2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Glycogen Storage Disease Type 0, Liver
  • Glycogen Storage Disorders- Liver
  • Glycogen storage disease type 0a, liver (Glycogen storage disorders)
  • Glycogen storage disease, type 0, 240600
  • fasting intolerance without enlarged liver
Tags
Green Green List (high evidence)
HAAO
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple congenital malformations
  • VACTERL-like phenotype
Tags
Green Green List (high evidence)
HADH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-hydroxyacyl-CoA dehydrogenase deficiency 231530
  • Hyperinsulinemic hypoglycemia, familial, 4 609975
Tags
Green Green List (high evidence)
HADHA
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial trifunctional protein deficiency (Disorders of mitochondrial fatty acid oxidation)
  • Trifunctional protein deficiency 609015
Tags
Green Green List (high evidence)
HADHB
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial trifunctional protein deficiency (Disorders of mitochondrial fatty acid oxidation)
  • Trifunctional protein deficiency 609015
Tags
Green Green List (high evidence)
HAMP
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hemochromatosis, type 2B 613313
  • Hereditary haemochromatosis Type 2 (Disorder of iron metabolism)
Tags
Green Green List (high evidence)
HARS2
5 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • ?Perrault syndrome 2 614926
  • Perrault syndrome 2, 614926
Tags
Green Green List (high evidence)
HCCS
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Linear skin defects with multiple congenital anomalies 1
  • Complex III (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Microphthalmia, syndromic 7, 309801
Tags
Green Green List (high evidence)
HCFC1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
Phenotypes
  • Mental retardation, X-linked 3 (methylmalonic acidemia and homocysteinemia, cblX type ) 309541
Tags
Green Green List (high evidence)
HEXA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • GM2-gangliosidosis, several forms, 272800
  • Tay-Sachs disease, 272800
Tags
Green Green List (high evidence)
HEXB
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sandhoff disease, infantile, juvenile, and adult forms, OMIM:268800
Tags
Green Green List (high evidence)
HFE
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hemochromatosis, OMIM:235200
Tags
Green Green List (high evidence)
HFE2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hemochromatosis, type 2A, 602390
  • Hereditary haemochromatosis Type 2 (Disorder of iron metabolism)
Tags
  • new-gene-name
Green Green List (high evidence)
HGD
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Alkaptonuria
Tags
Green Green List (high evidence)
HGSNAT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucopolysaccharidosis Type III
  • Mucopolysaccharidosis, Type III
  • Retinitis Pigmentosa 73
  • Mucopolysaccharidosis type IIIC (Sanfilippo C), 252930
  • Mucopolysaccharidosis Type IIIC
  • MPS IIIC, Sanfilippo C disease (Mucopolysaccharidoses)
Tags
Green Green List (high evidence)
HIBCH
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-hydroxyisobutryl-CoA hydrolase deficiency, 250620
  • HIBCH deficiency
  • Methacrylic aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
HLCS
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Holocarboxylase synthetase deficiency
  • Holocarboxylase synthetase deficiency, 253270
  • lactic acidosis with seizures and eczema, immune deficiency
  • Holocarboxylase synthetase deficiency (Disorders of biotin metabolism)
Tags
Green Green List (high evidence)
HMBS
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Porphyria, acute intermittent, nonerythroid variant, 176000
  • Acute intermittent porphyria (Acute neuropathic porphyrias)
  • Porphyria, acute intermittent, 176000
Tags
Green Green List (high evidence)
HMGCL
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Other
Phenotypes
  • 3-Hydroxy-3-methyl glutaric aciduria (Organic acidurias)
  • 3-Hydroxy-3-methylglutaryl-CoA lyase deficiency
  • HMG-CoA lyase deficiency, 246450
  • HMGCLD
Tags
Green Green List (high evidence)
HMGCS2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • HMG-CoA synthase-2 deficiency
Tags
Green Green List (high evidence)
HOGA1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperoxaluria Type III (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Hyperoxaluria, primary, type III 613616
Tags
Green Green List (high evidence)
HPD
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hawkinsinuria 140350
  • Tyrosinemia, type III 276710
Tags
Green Green List (high evidence)
HPRT1
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperuricemia, HRPT-related, OMIM:300323
  • Lesch-Nyhan syndrome, OMIM:300322
Tags
Green Green List (high evidence)
HPS1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hermansky-Pudlak syndrome 1 203300
Tags
Green Green List (high evidence)
HS2ST1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Intellectual disability
  • dysmorphic features
  • congenital anomalies
Tags
Green Green List (high evidence)
HSD17B10
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • HSD10 mitochondrial disease, OMIM:300438
Tags
Green Green List (high evidence)
HSD17B4
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • D-bifunctional protein deficiency, 261515
  • Peroxisomal D-bifunctional protein deficiency (Disorders of peroxisomal alpha-, beta and omega-oxidation)
Tags
Green Green List (high evidence)
HSD3B7
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3- ?-hydroxysterol ?5-oxidoreductase/isomerase deficiency (Disorders of bile acid biosynthesis)
  • Bile acid synthesis defect, congenital, 1, 607765
Tags
Green Green List (high evidence)
HSPD1
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leukodystrophy, hypomyelinating, 4, OMIM:612233 (AR)
  • Spastic paraplegia 13, autosomal dominant, OMIM:605280 (AD)
Tags
Green Green List (high evidence)
HTRA2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • 3-methylglutaconic aciduria, type VIII 617248
Tags
Green Green List (high evidence)
HYAL1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Mucopolysaccharidosis type IX, 601492
  • MPS IX, Natowicz (MPS IV, Morquio disease)
Tags
Green Green List (high evidence)
IARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • CAGSSS - Cataracts (CA), growth hormone deficiency (G), sensory neuropathy (S), sensorineural hearing loss (S), and skeletal dysplasia (S)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • No OMIM phenotype
Tags
Green Green List (high evidence)
IBA57
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 3, OMIM:615330
  • ?Spastic paraplegia 74, autosomal recessive, OMIM:616451
Tags
Green Green List (high evidence)
IDH2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial isocitrate dehydrogenase deficiency (Organic acidurias)
  • D-2-hydroxyglutaric aciduria 2, 613657
Tags
Green Green List (high evidence)
IDS
0 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MUCOPOLYSACCHARIDOSIS TYPE 2
  • MPS II, Hunter disease (Mucopolysaccharidoses)
  • Mucopolysaccharidosis II, 309900
  • Mucopolysaccharidosis Type II
Tags
Green Green List (high evidence)
IDUA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hurler syndrome
  • Mucopolysaccharidosis type 1H/S
  • MPS I, Hurler, Scheie disease (Mucopolysaccharidoses)
  • Scheie syndrome
  • Hurler-Scheie syndrome
  • Mucopolysaccharidosis type 1S
  • Mucopolysaccharidosis type 1H
  • Mucopolysaccharidosis Ih/s, 607015
  • Mucopolysaccharidosis, Type I
  • Mucopolysaccharidosis Is, 607016
  • Mucopolysaccharidosis Ih, 607014
Tags
Green Green List (high evidence)
IER3IP1
6 reviews
4 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Microcephaly, epilepsy, and diabetes syndrome, 614231
  • MEDS
Tags
Green Green List (high evidence)
2p21 region (includes PREPL and SLC3A1) Loss
ISCA-37440-Loss
Region
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • hyperphagia
  • lactic acidemia
  • mild/moderate mental retardation
  • Hypotonia-cystinuria syndrome (HCS)
  • 606407
  • failure to thrive
  • nephrolithiasis
  • rapid weight gain in late childhood
  • minor facial dysmorphism
  • growth hormone deficiency
  • facial dysmorphism
  • respiratory chain complex IV deficiency
  • cystinuria
  • neonatal seizures
  • 2p21 deletion syndrome
  • hypotonia
  • severe somatic and developmental delay
Tags
Green Green List (high evidence)
ISCA1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review
  • Expert Review Green
Phenotypes
  • MULTIPLE MITOCHONDRIAL DYSFUNCTIONS SYNDROME 5, 617613
Tags
Green Green List (high evidence)
ISCA2
5 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 4 616370
Tags
Green Green List (high evidence)
ISCU
4 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Myopathy with lactic acidosis, hereditary, 255125
  • Disorders of iron homeostasis
  • Defective Fe-S/lipoic acid biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Rhabdomyolysis and metabolic muscle disorders
Tags
  • non-coding-known-pathogenic
Green Green List (high evidence)
ISPD
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7
Tags
  • new-gene-name
Green Green List (high evidence)
ITPA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Inosine triphosphatase deficiency (Disorders of purine metabolism)
  • Epileptic encephalopathy, early infantile, 35, 616647
  • [Inosine triphosphatase deficiency], 613850
Tags
Green Green List (high evidence)
IVD
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • metabolic encephalopathy with hyperammonaemia, hypotonia, recurrent episodes of ketoacidosis, liver impairment, psychomotor retardation, recurrent infections.
  • Isovaleric acidemia
  • Isovaleric aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
KARS
5 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Deafness, autosomal recessive 89, 613916
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Charcot-Marie-Tooth disease, recessive intermediate, B (Lysyl-tRNA synthetase mutations) (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Charcot-Marie-Tooth disease, recessive intermediate, B, 613641
Tags
  • new-gene-name
Green Green List (high evidence)
KYNU
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hydroxykynureninuria (Disorders of histidine, tryptophan or lysine metabolism)
  • VACTERL-like phenotype
  • multiple congenital malformations
  • ?Hydroxykynureninuria, 236800
Tags
Green Green List (high evidence)
L2HGDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • L-2-hydroxyglutaric aciduria, 236792
Tags
Green Green List (high evidence)
LAMP2
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Danon disease
Tags
Green Green List (high evidence)
LARGE1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • N-acetylglucosaminyltransferase-like protein deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 6 608840
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 6 613154
  • N-acetylglucosaminyltransferase-like protein deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Green Green List (high evidence)
LARS
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • ?Infantile liver failure syndrome 1, 615438
Tags
  • new-gene-name
Green Green List (high evidence)
LARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Perrault syndrome 4, OMIM:615300
  • Hydrops, lactic acidosis, and sideroblastic anemia, OMIM:617021
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only)
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis
Tags
Green Green List (high evidence)
LBR
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Reynolds syndrome 613471
  • Greenberg skeletal dysplasia 215140
  • Pelger-Huet anomaly 169400
  • Pelger-Huet anomaly with mild skeletal anomalies 618019
Tags
Green Green List (high evidence)
LCAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Norum disease/LCAT deficiency, 245900
  • Fish-eye disease, 136120
  • Lecithin cholesterol acyltransferase deficiency (Disorders of high density lipoprotein metabolism)
Tags
Green Green List (high evidence)
LCT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lactose intolerance (Other carbohydrate disorders)
  • Lactase deficiency, congenital, 223000
Tags
Green Green List (high evidence)
LDHA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Glycogen storage disease XI, 612933
  • Muscle LDH deficiency (Glycogen storage disorders)
Tags
Green Green List (high evidence)
LDLR
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypercholesterolemia, familial, 1 143890
  • LDL cholesterol level QTL2 143890
Tags
Green Green List (high evidence)
LDLRAP1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypercholesterolemia, familial, 4 603813
Tags
Green Green List (high evidence)
LETM1
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Neurodegeneration, childhood-onset, with multisystem involvement due to mitochondrial dysfunction, OMIM:620089
Tags
Green Green List (high evidence)
LIAS
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase lipoic acid synthetase deficiency, 614462
  • Defective Fe-S/lipoic acid biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
LIPA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cholesteryl ester storage disease
Tags
Green Green List (high evidence)
LIPT1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Lipoyltransferase 1 deficiency
Tags
Green Green List (high evidence)
LIPT2
4 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Encephalopathy, neonatal severe, with lactic acidosis and brain abnormalities, 617668
Tags
Green Green List (high evidence)
LMBRD1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblF type, 277380
Tags
Green Green List (high evidence)
LONP1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • CODAS (cerebral, ocular, dental, auricular and skeletal) syndrome (MIM 600373)
Tags
Green Green List (high evidence)
LPIN1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Myoglobinuria, acute recurrent, autosomal recessive
Tags
Green Green List (high evidence)
LPL
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lipoprotein lipase deficiency, 238600
  • Combined hyperlipidemia, familial, 144250
  • Familial lipoprotein lipase deficiency (Familial chylomicronaemia, Inherited hypercholesterolaemias)
Tags
Green Green List (high evidence)
LRPPRC
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leigh syndrome, French-Canadian type, 220111
  • Mitochondrial Diseases
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Isolated complex IV deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
Tags
Green Green List (high evidence)
LYRM4
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 19, OMIM:615595
Tags
Green Green List (high evidence)
LYRM7
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 8
  • Isolated complex III deficiency
  • severe encephalopathy, lactic acidosis and profound, isolated cIII deficiency in skeletal muscle
  • leukoencephalopathy and complex III deficiency
  • 615838
Tags
Green Green List (high evidence)
MAGT1
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Immunodeficiency, X-linked, with magnesium defect, Epstein-Barr virus infection and neoplasia 300853
Tags
Green Green List (high evidence)
MAN1B1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • MAN1B1-CDG (Disorders of protein N-glycosylation)
  • Mental retardation, autosomal recessive 15 614202
Tags
Green Green List (high evidence)
MAN2B1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mannosidosis, alpha-, types I and II
Tags
Green Green List (high evidence)
MANBA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mannosidosis, beta 248510
Tags
Green Green List (high evidence)
MAOA
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Brunner syndrome 300615
  • {Antisocial behavior} 300615
Tags
Green Green List (high evidence)
MARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Spastic Ataxia 13, autosomal recessive, 611390
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • ?Combined oxidative phosphorylation deficiency 25
Tags
Green Green List (high evidence)
MAT1A
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypermethioninemia, persistent, autosomal dominant, due to methionine adenosyltransferase I/III deficiency
Tags
Green Green List (high evidence)
MCCC1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-Methylcrotonyl-CoA carboxylase 1 deficiency, 210200
Tags
Green Green List (high evidence)
MCCC2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-Methylcrotonyl-CoA carboxylase 2 deficiency, 210210
Tags
Green Green List (high evidence)
MCEE
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonyl-CoA epimerase deficiency (Organic acidurias)
  • Methylmalonyl-CoA epimerase deficiency
  • metabolic encephalopathy with hyperammonaemia, hypotonia, recurrent episodes of ketoacidosis, liver impairment, psychomotor retardation, recurrent infections
Tags
Green Green List (high evidence)
MCOLN1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucolipidosis, Type IV
  • Mucolipidosis IV (Other lysosomal disorders)
Tags
Green Green List (high evidence)
MDH2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Epileptic encephalopathy, early infantile, 51 617339
Tags
Green Green List (high evidence)
MECR
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities 617282
Tags
Green Green List (high evidence)
MFF
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Encephalopathy due to defective mitochondrial and peroxisomal fission 2
  • Encephalopathy due to defective mitochondrial and peroxisomal fission 2, 617086
  • Disorders of mitochondrial dynamics, fusion and fission (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
MFN2
3 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Charcot-Marie-Tooth disease, axonal, type 2A2A, OMIM:609260
  • Charcot-Marie-Tooth disease, axonal, type 2A2B, OMIM:617087
  • Hereditary motor and sensory neuropathy VIA, OMIM:601152
Tags
Green Green List (high evidence)
MFSD8
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 7 61095
Tags
Green Green List (high evidence)
MGAT2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • N-acetylglucosaminyltransferase deficiency (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type IIa 212066
Tags
Green Green List (high evidence)
MGME1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Mitochondrial DNA depletion syndrome 11, 615084
  • Disorders of mitochondrial DNA maintenance and integrity
Tags
Green Green List (high evidence)
MICU1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Myopathy with extrapyramidal signs 615673
Tags
Green Green List (high evidence)
MIPEP
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Combined oxidative phosphorylation deficiency 31, 617228
Tags
Green Green List (high evidence)
MLYCD
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Malonyl-CoA decarboxylase deficiency
  • malonic aciduria
  • Malonyl-CoA decarboxylase deficiency (Organic acidurias)
  • 3.5.1. Malonyl CoA decarboxylase deficiency Other disorders of fatty acid and ketone body metabolism)
Tags
Green Green List (high evidence)
MMAA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria, vitamin B12-responsive 251100
  • Defect in adenosylcobalamin synthesis-cbl A (Disorders of cobalamin absorption, transport and metabolism)
Tags
Green Green List (high evidence)
MMAB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Defect in adenosylcobalamin synthesis-cbl B (Disorders of cobalamin absorption, transport and metabolism)
  • Methylmalonic aciduria, vitamin B12-responsive, due to defect in synthesis of adenosylcobalamin, cblB complementation type 251110
Tags
Green Green List (high evidence)
MMACHC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblC type, 277400
Tags
Green Green List (high evidence)
MMADHC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Homocystinuria, cblD type, variant 1
Tags
Green Green List (high evidence)
MOCS1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Molybdenum cofactor deficiency A 252150
Tags
Green Green List (high evidence)
MOCS2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Molybdenum cofactor deficiency B 252160
Tags
Green Green List (high evidence)
MOGS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIb 606056
  • MOGS-CDG (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type IIb, 606056
  • (MOGS-CDG (Disorders of protein N-glycosylation))
Tags
Green Green List (high evidence)
MPC1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial pyruvate carrier deficiency, OMIM:614741
Tags
Green Green List (high evidence)
MPDU1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type If 609180
  • Lec35 deficiency (Disorders of multiple glycosylation and other glycosylation pathways)
Tags
Green Green List (high evidence)
MPI
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Ib, OMIM:602579
  • MPI-CDG, MONDO:0011257
  • Phosphomannose isomerase deficiency (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
MPV17
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial DNA Depletion Syndrome
  • Disorders of mitochondrial DNA maintenance and integrity
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial DNA depletion syndrome 6 (hepatocerebral type), 256810 -3
Tags
Green Green List (high evidence)
MRPL3
5 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 9 614582
Tags
Green Green List (high evidence)
MRPL44
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • ?Combined oxidative phosphorylation deficiency 16, 615395
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Green Green List (high evidence)
MRPS2
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 36 617950
  • No OMIM phenotype
Tags
Green Green List (high evidence)
MRPS22
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 5, 611719
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Green Green List (high evidence)
MRPS34
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review
  • Expert Review Green
  • Literature
Phenotypes
  • Combined oxidative phosphorylation deficiency 32 617664
Tags
Green Green List (high evidence)
MSMO1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sterol-C4-methyl oxidase deficiency (Disorders of sterol biosynthesis)
  • Microcephaly, congenital cataract, and psoriasiform dermatitis, OMIM:616834
  • Microcephaly-congenital cataract-psoriasiform dermatitis syndrome, MONDO:0014793
Tags
Green Green List (high evidence)
MSTO1
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Myopathy, mitochondrial, and ataxia OMIM:617675
  • mitochondrial myopathy-cerebellar ataxia-pigmentary retinopathy syndrome MONDO:0044714
Tags
  • Q1_24_MOI
Green Green List (high evidence)
MT-ATP6
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-ATP8
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • CARDIOMYOPATHY, APICAL HYPERTROPHIC, AND NEUROPATHY
  • CARDIOMYOPATHY, INFANTILE HYPERTROPHIC
  • BRAIN PSEUDOATROPHY, REVERSIBLE, VALPROATE-INDUCED, SUSCEPTIBILITY TO
Tags
  • gene-checked
Green Green List (high evidence)
MT-CO1
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • CYTOCHROME c OXIDASE I DEFICIENCY
  • SIDEROBLASTIC ANEMIA, ACQUIRED IDIOPATHIC
  • LEBER OPTIC ATROPHY
  • MYOGLOBINURIA, RECURRENT
  • CYTOCHROME c OXIDASE DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-CO2
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • CYTOCHROME c OXIDASE DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-CO3
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • LEBER OPTIC ATROPHY
  • SEIZURES AND LACTIC ACIDOSIS
  • MITOCHONDRIAL COMPLEX IV DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-CYB
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • ENCEPHALOMYOPATHY, MITOCHONDRIAL
  • CARDIOMYOPATHY, INFANTILE HISTIOCYTOID
  • MULTISYSTEM DISORDER
  • EXERCISE INTOLERANCE
  • PARKINSONISM/MELAS OVERLAP SYNDROME
  • EXERCISE INTOLERANCE, CARDIOMYOPATHY, AND SEPTOOPTIC DYSPLASIA
  • LEBER OPTIC ATROPHY
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND1
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MELAS SYNDROME
  • MITOCHONDRIAL COMPLEX I DEFICIENCY
  • LEBER OPTIC ATROPHY
  • DYSTONIA, ADULT-ONSET
  • DEAFNESS, NONSYNDROMIC SENSORINEURAL, MITOCHONDRIAL
  • SUDDEN INFANT DEATH SYNDROME
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND2
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MITOCHONDRIAL COMPLEX I DEFICIENCY
  • LEBER OPTIC ATROPHY
  • LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND3
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MITOCHONDRIAL COMPLEX I DEFICIENCY
  • LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND4
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MELAS SYNDROME
  • LEBER OPTIC ATROPHY AND DYSTONIA
  • LEBER OPTIC ATROPHY
  • MITOCHONDRIAL COMPLEX I DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND4L
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • LEBER OPTIC ATROPHY
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND5
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MELAS SYNDROME
  • LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY
  • LEBER OPTIC ATROPHY
  • MERRF SYNDROME
Tags
  • gene-checked
Green Green List (high evidence)
MT-ND6
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MELAS SYNDROME
  • STRIATAL NECROSIS, BILATERAL, WITH DYSTONIA
  • LEBER OPTIC ATROPHY AND DYSTONIA
  • LEBER OPTIC ATROPHY
  • LEIGH SYNDROME DUE TO MITOCHONDRIAL COMPLEX I DEFICIENCY
Tags
  • gene-checked
Green Green List (high evidence)
MT-RNR1
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • DEAFNESS, AMINOGLYCOSIDE-INDUCED
  • DEAFNESS, NONSYNDROMIC SENSORINEURAL, MITOCHONDRIAL
  • AUDITORY NEUROPATHY
  • CARDIOMYOPATHY, RESTRICTIVE
Tags
  • gene-checked
Green Green List (high evidence)
MT-TA
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MITOCHONDRIAL MYOPATHY
  • MYOTONIC DYSTROPHY-LIKE MYOPATHY
Tags
  • gene-checked
Green Green List (high evidence)
MT-TC
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MELAS SYNDROME
  • DYSTONIA, MITOCHONDRIAL
Tags
  • gene-checked
Green Green List (high evidence)
MT-TD
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MITOCHONDRIAL MYOPATHY, ISOLATED
Tags
  • gene-checked
Green Green List (high evidence)
MT-TE
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Phenotypes
  • MYOPATHY, MITOCHONDRIAL, WITH DIABETES MELLITUS
  • DIABETES AND DEAFNESS, MATERNALLY INHERITED
  • MITOCHONDRIAL MYOPATHY, INFANTILE, TRANSIENT
Tags
  • gene-checked
Green Green List (high evidence)
MT-TF
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TG
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TH
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TI
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TK
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TL1
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TL2
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TM
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TN
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TP
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TQ
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TR
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TS1
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TS2
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TV
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TW
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MT-TY
3 reviews
2 green
MITOCHONDRIAL
Sources
  • Expert Review Green
Tags
  • gene-checked
Green Green List (high evidence)
MTFMT
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 15 OMIM:614947
  • combined oxidative phosphorylation defect type 15 MONDO:0013987
  • Mitochondrial complex I deficiency, nuclear type 27 OMIM:618248
  • mitochondrial complex 1 deficiency, nuclear type 27 MONDO:0032631
Tags
Green Green List (high evidence)
MTHFR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylenetetrahydrofolate reductase deficiency (Disorders of folate metabolism and transport)
  • Homocystinuria due to MTHFR deficiency
Tags
Green Green List (high evidence)
MTO1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 10, 614702
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • infantile hypertrophic cardiomyopathy and lactic acidosis.
Tags
Green Green List (high evidence)
MTPAP
5 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • ?Spastic ataxia 4, autosomal recessive 613672
Tags
Green Green List (high evidence)
MTR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Homocystinuria-megaloblastic anemia, cblG complementation type
Tags
Green Green List (high evidence)
MTRR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Homocystinuria-megaloblastic anemia, cbl E type
Tags
Green Green List (high evidence)
MTTP
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Abetalipoproteinemia, 200100
  • (ACANTHOCYTOSIS, BASSEN-KORNZWEIG SYNDROME, MICROSOMAL TRIGLYCERIDE TRANSFER PROTEIN DEFICIENCY, MTP DEFICIENCY)
  • Familial abetalipoproteinaemia (Inherited hypolipidaemias)
Tags
Green Green List (high evidence)
MUT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • metabolic encephalopathy with hyperammonaemia, hypotonia, recurrent episodes of ketoacidosis, liver impairment, psychomotor retardation, recurrent infections.
  • Methylmalonic aciduria, mut(0) type 251000
  • Methylmalonyl-CoA mutase deficiency (Organic acidurias)
Tags
  • new-gene-name
Green Green List (high evidence)
MVK
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyper-IgD syndrome, OMIM:260920
  • Mevalonic aciduria, OMIM:610377
  • Porokeratosis 3, multiple types, OMIM:175900
Tags
Green Green List (high evidence)
NADK2
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • 2,4-dienoyl-CoA reductase deficiency, OMIM:616034
Tags
Green Green List (high evidence)
NAGA
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Kanzaki disease
Tags
Green Green List (high evidence)
NAGLU
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucopolysaccharidosis Type III
  • Mucopolysaccharidosis, Type III
  • Mucopolysaccharidosis type IIIB (Sanfilippo B), 252920
  • MPS IIIB, Sanfilippo B disease (Mucopolysaccharidoses)
  • MUCOPOLYSACCHARIDOSIS TYPE 3B
  • Mucopolysaccharidosis Type IIIB
Tags
Green Green List (high evidence)
NAGS
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • N-Acetylglutamate synthetase deficiency (Urea cycle disorders and inherited hyperammonaemias)
  • N-acetylglutamate synthase deficiency
Tags
Green Green List (high evidence)
NARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 24
Tags
Green Green List (high evidence)
NAXD
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Encephalopathy, progressive, early-onset, with brain edema and/or leukoencephalopathy, 2, OMIM:618321
Tags
Green Green List (high evidence)
NAXE
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Encephalopathy, progressive, early-onset, with brain edema and/or leukoencephalopathy, OMIM:617186
Tags
Green Green List (high evidence)
NDUFA1
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFA10
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Leigh syndrome, 256000
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFA11
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFA12
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 23, OMIM:618244
Tags
Green Green List (high evidence)
NDUFA13
6 reviews
3 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 28, OMIM:618249
Tags
Green Green List (high evidence)
NDUFA2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFA4
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Isolated complex IV deficiency
  • No OMIM phenotype
Tags
Green Green List (high evidence)
NDUFA6
3 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 33, OMIM:618253
Tags
Green Green List (high evidence)
NDUFA8
5 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 37, OMIM:619272
Tags
Green Green List (high evidence)
NDUFA9
5 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000 -3
  • Isolated complex I deficiency
  • Mitochondrial complex I deficiency, nuclear type 26, 618247
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000
Tags
Green Green List (high evidence)
NDUFAF1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFAF2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Isolated complex I deficiency
  • Leigh syndrome, 256000
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFAF3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFAF4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFAF5
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex 1 deficiency, 252010
  • Mitochondrial Diseases
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFAF6
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFAF8
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 34, OMIM:618776
Tags
  • gene-checked
Green Green List (high evidence)
NDUFB10
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 35, OMIM:619003
Tags
Green Green List (high evidence)
NDUFB11
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
Phenotypes
  • Linear skin defects with multiple congenital anomalies 3
  • microphthalmia with linear skin defects syndrome
  • histiocytoid cardiomyopathy
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFB3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 25, OMIM:618246
Tags
Green Green List (high evidence)
NDUFB8
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 32, 618252
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFC2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 36 OMIM:619170
Tags
Green Green List (high evidence)
NDUFS1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 5, OMIM:618226 Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
NDUFS2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFS3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000Mitochondrial complex I deficiency, 252010
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFS4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leigh syndrome, 256000
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFS6
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I, mitochondrial respiratory chain, deficiency of, 252010
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFS7
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Leigh syndrome, 256000
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFS8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Leigh syndrome due to mitochondrial complex I deficiency, 256000
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFV1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
NDUFV2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 7, OMIM:618229
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
Tags
Green Green List (high evidence)
NEU1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sialidosis type II
  • Sialidosis, type I
  • Sialidosis (Oligosaccharidoses)
  • Mucolipidosis, Type I
  • Sialidosis
Tags
Green Green List (high evidence)
NFS1
6 reviews
3 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 52, OMIM:619386
Tags
  • treatable
Green Green List (high evidence)
NFU1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 1, OMIM:605711
  • Defective Fe-S/lipoic acid biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
NGLY1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • OrphaNet: ORPHA404454
  • Congenital disorder of deglycosylation 615273
  • Alacrimia-choreoathetosis-liver dysfunction syndrome
  • OMIM:615273
Tags
Green Green List (high evidence)
NHLRC1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Epilepsy, progressive myoclonic 2B (Lafora)
Tags
Green Green List (high evidence)
NNT
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Glucocorticoid deficiency 4, with or without mineralocorticoid deficiency, 614736
Tags
Green Green List (high evidence)
NPC1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Niemann-Pick disease, type C1
Tags
Green Green List (high evidence)
NPC2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Niemann-Pick disease type C2, 607625
Tags
Green Green List (high evidence)
NSDHL
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital hemidysplasia with ichtyosiform erythroderma and limb defects (Disorders of sterol biosynthesis)
  • CHILD syndrome 308050 XLD
  • CK syndrome 300831 XLR
Tags
Green Green List (high evidence)
NSUN3
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 48, OMIM:619012
Tags
Green Green List (high evidence)
NT5C3A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Anemia, hemolytic, due to UMPH1 deficiency, 266120
  • Uridine-5 -monophosphate hydrolase superactivity (Disorders of pyrimidine metabolism)
Tags
Green Green List (high evidence)
NUBPL
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, 252010
  • Mitochondrial Diseases
  • Isolated complex I deficiency
  • Complex I (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex I Deficiency
Tags
Green Green List (high evidence)
OAT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ornithine aminotransferase deficiency (Disorders of ornithine or proline metabolism)
  • Gyrate atrophy of choroid and retina with or without ornithinemia
Tags
Green Green List (high evidence)
OCRL
2 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dent disease 2, OMIM:300555
  • Lowe syndrome, OMIM:309000
Tags
Green Green List (high evidence)
OGDH
5 reviews
3 green 2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Alpha-ketoglutarate dehydrogenase deficiency, OMIM:203740
  • oxoglutaricaciduria, MONDO:0008759
Tags
Green Green List (high evidence)
OPA1
4 reviews
2 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Optic atrophy 1, OMIM:165500
  • Optic atrophy plus syndrome, OMIM:125250
  • Mitochondrial DNA depletion syndrome 14 (encephalocardiomyopathic type), OMIM:616896
  • Behr syndrome, OMIM:210000
Tags
Green Green List (high evidence)
OPA3
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylglutaconic aciduria type III, Costeff syndrome (Organic acidurias)
  • 3-methylglutaconic aciduria, type III, 258501Optic atrophy 3 with cataract, 165300
Tags
Green Green List (high evidence)
OTC
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ornithine transcarbamylase deficiency, 311250
  • Ornithine transcarbamylase deficiency (Urea cycle disorders and inherited hyperammonaemias)
Tags
Green Green List (high evidence)
OXCT1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Succinyl CoA:3-oxoacid CoA transferase deficiency
  • severe ketosis on fasting often ketotic in fed state no hepatomegaly
  • Succinyl-CoA:3-Oxoacid-CoA transferase (SCOT) deficiency (Disorders of ketone body metabolism)
  • Succinyl CoA:3-oxoacid CoA transferase deficiency (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
PAH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Phenylketonuria
Tags
Green Green List (high evidence)
PANK2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • HARP syndrome 607236
  • Neurodegeneration with brain iron accumulation 234200
Tags
Green Green List (high evidence)
PARS2
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Epileptic encephalopathy, early infantile, 75, 618437Alpers syndrome.
  • Epileptic encephalopathy, early infantile, 75, 618437
  • Alpers syndrome
Tags
Green Green List (high evidence)
PC
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate carboxylase deficiency, OMIM:266150
Tags
Green Green List (high evidence)
PCBD1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperphenylalaninemia, BH4-deficient, D
Tags
Green Green List (high evidence)
PCCA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Propionicacidemia
  • Propionic acidemia
  • Propionicacidemia 606054
  • metabolic encephalopathy with hyperammonaemia, hypotonia, recurrent episodes of ketoacidosis, liver impairment, psychomotor retardation, recurrent infections
  • Propionic aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
PCCB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • as PCCA (metabolic encephalopathy with hyperammonaemia, hypotonia, recurrent episodes of ketoacidosis, liver impairment, psychomotor retardation, recurrent infections)
  • Propionic acidemia
  • Propionicacidemia 606054
  • Propionicacidemia
  • Propionic aciduria (Organic acidurias)
Tags
Green Green List (high evidence)
PCK1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Phosphoenolpyruvate carboxykinase deficiency, cytosolic 261680
Tags
Green Green List (high evidence)
PCSK9
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypercholesterolemia, familial, 3 603776
  • {Low density lipoprotein cholesterol level QTL 1} 603776
Tags
Green Green List (high evidence)
PDHA1
3 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase E1? subunit deficiency (Disorders of pyruvate metabolism)
  • Leigh syndrome, X-linked, 308930
  • Pyruvate dehydrogenase E1-alpha deficiency, 312170
Tags
Green Green List (high evidence)
PDHB
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase E1-beta deficiency, OMIM:614111
Tags
Green Green List (high evidence)
PDHX
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lacticacidemia due to PDX1 deficiency, OMIM:245349
Tags
Green Green List (high evidence)
PDK3
6 reviews
2 green 1 red
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Charcot-Marie-Tooth disease, X-linked dominant, 6 300905
Tags
Green Green List (high evidence)
PDP1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase phosphatase deficiency, 608782
  • Pyruvate dehydrogenase phosphatase deficiency (Disorders of pyruvate metabolism)
Tags
Green Green List (high evidence)
PDSS1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 2, 614651
  • Disorders of CoQ10 biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of ubiquinone metabolism and biosynthesis
Tags
Green Green List (high evidence)
PDSS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Coenzyme Q10 deficiency, primary, 3, 614652
  • Disorders of CoQ10 biosynthesis (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of ubiquinone metabolism and biosynthesis
Tags
Green Green List (high evidence)
PEPD
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Prolidase deficiency 170100
Tags
Green Green List (high evidence)
PET100
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Leigh syndrome
  • Mitochondrial complex IV deficiency, 220110
  • Isolated complex IV deficiency
Tags
Green Green List (high evidence)
PEX1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 1B (NALD/IRD) 601539
  • Peroxisome biogenesis disorder 1A (Zellweger) 214100
Tags
Green Green List (high evidence)
PEX10
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 6A (Zellweger) 614870
  • Peroxisome biogenesis disorder 6B 614871
Tags
Green Green List (high evidence)
PEX11B
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Peroxisome biogenesis disorder 14B
Tags
Green Green List (high evidence)
PEX12
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 3A (Zellweger), 614859
  • Peroxisome biogenesis disorder 3B
Tags
Green Green List (high evidence)
PEX13
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 11A (Zellweger)
Tags
Green Green List (high evidence)
PEX14
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 13A (Zellweger)
Tags
Green Green List (high evidence)
PEX16
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome Biogenesis Disorders, Zellweger Syndrome Spectrum
  • Peroxisome biogenesis disorder 8A, (Zellweger), 614876
  • Peroxisomal biogenesis disorders
  • Zellweger Syndrome
Tags
Green Green List (high evidence)
PEX19
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 12A (Zellweger)
Tags
Green Green List (high evidence)
PEX2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 5A (Zellweger), 614866
  • Peroxisome biogenesis disorder 5B, 614867
Tags
Green Green List (high evidence)
PEX26
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 7A (Zellweger) 61487
  • Peroxisome biogenesis disorder 7B 614873
Tags
Green Green List (high evidence)
PEX3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 10A (Zellweger) 614882
Tags
Green Green List (high evidence)
PEX5
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of peroxisome biogenesis
  • Peroxisome biogenesis disorder 2A (Zellweger)
Tags
Green Green List (high evidence)
PEX6
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Peroxisome biogenesis disorder 4A (Zellweger) OMIM:614862
  • peroxisome biogenesis disorder 4A (Zellweger) MONDO:0013930
  • Peroxisome biogenesis disorder 4B OMIM:614863
  • peroxisome biogenesis disorder 4B MONDO:0013931
Tags
Green Green List (high evidence)
PEX7
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Peroxisome biogenesis disorder 9B 614879
  • Rhizomelic chondrodysplasia punctata, type 1
  • Rhizomelic chondrodysplasia punctata type 1 (Peroxisomal disorders)
Tags
Green Green List (high evidence)
PFKM
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease VII
Tags
Green Green List (high evidence)
PGAM2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease X 261670
Tags
Green Green List (high evidence)
PGAP2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperphosphatasia with mental retardation syndrome 3 614207
  • PGAP2-CDG (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
Tags
Green Green List (high evidence)
PGAP3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hyperphosphatasia with mental retardation syndrome 4
Tags
Green Green List (high evidence)
PGK1
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Phosphoglycerate kinase 1 deficiency
Tags
Green Green List (high evidence)
PGM1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Congenital disorder of deglycosylation 615273
  • Glycogen storage disease type XIV (Glycogen storage disorders)
  • Congenital disorder of glycosylation, type It, 614921
  • Glycogen Storage Disorders- Muscle
  • Glycogen Storage Disease Type XIV
  • Glycogen storage disease XIV, 612934
Tags
Green Green List (high evidence)
PGM3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Immunodeficiency 23
Tags
Green Green List (high evidence)
PHGDH
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Neu-Laxova syndrome 1 256520
  • Phosphoglycerate dehydrogenase deficiency 601815
Tags
Green Green List (high evidence)
PHKA1
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscle glycogenosis, 300559
Tags
Green Green List (high evidence)
PHKA2
0 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Glycogen Storage Disorders- Liver
  • Glycogen storage disease, type IXa2, 306000
  • Glycogen storage disease, type IXa1, 306000
  • hepatomegaly and mild hypoglycaemia
  • Glycogen storage disease type IX Hepatic phosphorylase kinase deficiency (Glycogen storage disorders)
Tags
Green Green List (high evidence)
PHKB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • hepatomegaly and variable myopathy
  • Glycogen Storage Disorders- Liver
  • Glycogen Storage Disorders- Muscle
  • Glycogen Storage Disease
  • Glycogen storage disease type IX Hepatic and muscle phosphorylase kinase deficiency (Glycogen storage disorders)
Tags
Green Green List (high evidence)
PHKG2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • hepatomegaly and variable myopathy
  • Glycogen Storage Disorders- Liver
  • Glycogen Storage Disease
  • Glycogen storage disease IXc, 613027
  • Glycogen storage disease type IX Hepatic phosphorylase kinase deficiency with cirrhosis (Glycogen storage disorders)
  • Cirrhosis due to liver phosphorylase kinase deficiency
Tags
Green Green List (high evidence)
PHYH
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Refsum disease, 266500
  • Refsum disease (Disorders of peroxisomal alpha-, beta and omega-oxidation)
Tags
Green Green List (high evidence)
PIGA
0 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple congenital anomalies-hypotonia-seizures syndrome 2 300868
  • PIGA-CDG (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
Tags
  • Skewed X-inactivation
Green Green List (high evidence)
PIGL
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • PIGL-CDG (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • CHIME syndrome 280000
Tags
Green Green List (high evidence)
PIGN
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • PIGN-CDG (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • Multiple congenital anomalies-hypotonia-seizures syndrome 1
Tags
Green Green List (high evidence)
PIGO
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperphosphatasia (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • Hyperphosphatasia with mental retardation syndrome 2 614749
Tags
Green Green List (high evidence)
PIGS
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Glycosylphosphatidylinositol biosynthesis defect 18 618143
Tags
Green Green List (high evidence)
PIGT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple congenital anomalies-hypotonia-seizures syndrome 3
Tags
Green Green List (high evidence)
PIGV
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperphosphatasia (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • Hyperphosphatasia with mental retardation syndrome 1 239300
  • (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
Tags
Green Green List (high evidence)
PINK1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Parkinson disease 6, early onset 605909
Tags
Green Green List (high evidence)
PLA2G6
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Infantile neuroaxonal dystrophy 1
Tags
Green Green List (high evidence)
PMM2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Phosphomannomutase 2 deficiency (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Ia 212065
Tags
Green Green List (high evidence)
PMPCA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • slowly progressive cerebellar ataxia
  • non-progressive cerebellar ataxia
Tags
Green Green List (high evidence)
PMPCB
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Multiple mitochondrial dysfunctions syndrome 6 OMIM:617954
  • multiple mitochondrial dysfunctions syndrome 6 MONDO:0054785
Tags
Green Green List (high evidence)
PNP
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Immunodeficiency due to purine nucleoside phosphorylase deficiency 613179
Tags
Green Green List (high evidence)
PNPLA2
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Neutral lipid storage disease with myopathy MIM#610717
Tags
Green Green List (high evidence)
PNPLA8
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • ?Mitochondrial myopathy with lactic acidosis, 251950
Tags
Green Green List (high evidence)
PNPO
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyridoxamine 5 -oxidase deficiency (Disorders of pyridoxine metabolism)
Tags
Green Green List (high evidence)
PNPT1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 13, OMIM:614932
  • Deafness, autosomal recessive 70, OMIM:614934
  • Disorders of mitochondrial protein import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Green Green List (high evidence)
POLG
4 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Progressive external ophthalmoplegia, autosomal dominant, 157640
  • Progressive external ophthalmoplegia, autosomal recessive, 258450
  • Mitochondrial DNA depletion syndrome 4A (Alpers type), 203700
  • Progressive External Ophthalmoplegia with Mitochondrial DNA Deletions
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial DNA depletion syndrome 4B (MNGIE type), 613662
  • Mitochondrial DNA depletion syndrome 4A (Alpers type)
  • Mitochondrial DNA Depletion Syndrome
  • Mitochondrial recessive ataxia syndrome (includes SANDO and SCAE), 607459
Tags
Green Green List (high evidence)
POLG2
4 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial DNA depletion syndrome syndrome 16 (hepatic type), OMIM:618528
  • Mitochondrial DNA depletion syndrome 16B (neuroophthalmic type), OMIM:619425
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 4, OMIM:610131
Tags
Green Green List (high evidence)
POMGNT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 3 253280
  • Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C 3 613157
  • Protein-O-mannose beta-1,2-N-acetyglucosaminyltransferase deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Retinitis pigmentosa 76 617123
Tags
Green Green List (high evidence)
POMGNT2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8
Tags
Green Green List (high evidence)
POMK
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Phenotypes
  • ?Muscular dystrophy-dystroglycanopathy (limb-girdle) type C, 12 OMIM:616094
  • limb-girdle muscular dystrophy due to POMK deficiencyMONDO:0014489
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 12 OMIM:615249
  • muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12 MONDO:0014101
Tags
Green Green List (high evidence)
POMT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 1 613155
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 1 609308
  • Protein-O-mannosyltransferase 1 deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1 236670
Tags
Green Green List (high evidence)
POMT2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 2 613158
  • Protein-O-mannosyltransferase 2 deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 2 613150
  • Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 2 613156
Tags
Green Green List (high evidence)
POR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis 201750
  • Disordered steroidogenesis due to cytochrome P450 oxidoreductase 613571
Tags
Green Green List (high evidence)
PPA2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Sudden cardiac failure, infantile, 617222
  • Sudden cardiac failure, alcohol-induced, 617223
Tags
Green Green List (high evidence)
PPOX
2 reviews
1 green 1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Porphyria variegata 176200
  • Variegate porphyria (Acute neuropathic porphyrias)
Tags
Green Green List (high evidence)
PPT1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 1
Tags
Green Green List (high evidence)
PRKAG2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cardiomyopathy, hypertrophic 6, 600858
  • Glycogen storage disease of heart, lethal congenital, 261740
  • Wolff-Parkinson-White syndrome, 194200
Tags
Green Green List (high evidence)
PRODH
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperprolinemia, type I, OMIM:239500
  • hyperprolinemia type 1, MONDO:0009400
Tags
Green Green List (high evidence)
PRPS1
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Arts syndrome 301835
  • Charcot-Marie-Tooth disease, X-linked recessive, 5 311070
  • Deafness, X-linked 1 304500
  • Gout, PRPS-related 300661
  • Phosphoribosylpyrophosphate synthetase superactivity 300661
Tags
Green Green List (high evidence)
PSAP
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Atypical Gaucher disease
  • Metachromatic leukodystrophy due to SAP-b deficiency, 249900
  • Combined SAP deficiency
  • Combined SAP deficiency, 611721
  • Prosaposin deficiency (Sphingolipidoses)
  • Atypical Krabbe disease
  • Gaucher disease, atypical, 610539
  • Krabbe disease, atypical, 611722
Tags
Green Green List (high evidence)
PSAT1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Phosphoserine aminotransferase deficiency 610992
  • Neu-Laxova syndrome 2 616038
Tags
Green Green List (high evidence)
PTS
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • 6-Pyruvoyl-tetrahydropterin synthase deficiency (Disorders of pterin metabolism)
  • Hyperphenylalaninemia, BH4-deficient, A 261640
Tags
Green Green List (high evidence)
PUS1
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial myopathy and sideroblastic anemia 1, 600462
Tags
Green Green List (high evidence)
PYCR1
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cutis laxa, autosomal recessive, type IIB, 612940
  • Cutis laxa, autosomal recessive, type IIb/IIIb (Disorders of ornithine or proline metabolism)
  • Cutis laxa, autosomal recessive, type IIIB, 614438
Tags
Green Green List (high evidence)
PYGL
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen Storage Disease
  • Glycogen Storage Disorders- Liver
  • Glycogen storage disease VI, 232700
  • hepatomegaly and mild hypoglycaemia
  • Glycogen Storage Disease Type VI
  • Glycogen storage disease type VI, Hers (Glycogen storage disorders)
Tags
Green Green List (high evidence)
PYGM
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease type V, McArdle (Glycogen storage disorders)
  • McArdle disease 232600
Tags
Green Green List (high evidence)
QDPR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperphenylalaninemia, BH4-deficient, C
Tags
Green Green List (high evidence)
QRSL1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 40, OMIM:618835
Tags
Green Green List (high evidence)
RARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Pontocerebellar hypoplasia, type 6, 611523
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
RBCK1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Polyglucosan body myopathy 1 with or without immunodeficiency, OMIM:615895
Tags
Green Green List (high evidence)
RBP4
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Retinol binding protein deficiency (Other disorders of vitamins and cofactors)
  • Posterior segment abnormalities
Tags
Green Green List (high evidence)
RFT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type In 612015
  • Flippase of Man5GlcNAc2-PP-Dol deficiency (Disorders of protein N-glycosylation)
Tags
Green Green List (high evidence)
RMND1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 11, 614922
  • Encephalopathy associated with multiple oxidative phosphorylation complex deficiencies and a mitochondrial translation defect
Tags
Green Green List (high evidence)
RNASEH1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 2
Tags
Green Green List (high evidence)
RPIA
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Ribose-5-phosphate isomerase deficiency (Disorders of pentose metabolism)
  • Ribose 5-phosphate isomerase deficiency, OMIM:608611
Tags
Green Green List (high evidence)
RPL10
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
Phenotypes
  • Mental retardation, X-linked, syndromic, 35
Tags
Green Green List (high evidence)
RRM2B
3 reviews
3 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5, 613077
  • Mitochondrial DNA depletion syndrome 8B (MNGIE type), 612075
  • Mitochondrial DNA Depletion Syndrome (recessive)
  • Mitochondrial Ribonucelotide Reductase subunit 2 deficiency (Disorders of purine metabolism)
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions (autosomal dominant)
  • Disorders of mitochondrial DNA maintenance and integrity
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial DNA depletion syndrome 8A (encephalomyopathic type with renal tubulopathy), 612075
Tags
Green Green List (high evidence)
RTN4IP1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Optic atrophy 10 with or without ataxia, mental retardation, and seizures 616732
Tags
Green Green List (high evidence)
SACS
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Spastic ataxia, Charlevoix-Saguenay type
  • Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS)
Tags
Green Green List (high evidence)
SAMHD1
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • (Disorders of nucleotide metabolism, Aicardi-Goutieres Syndrome) AGS5
  • Aicardi-Goutieres syndrome-5 (AGS5)
  • Aicardi-Goutieres syndrome 5, 612952
Tags
Green Green List (high evidence)
SAR1B
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Anderson disease (Inherited hypolipidaemias)
  • CHYLOMICRON RETENTION DISEASE 246700
Tags
Green Green List (high evidence)
SARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis, 613845
Tags
Green Green List (high evidence)
SC5D
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lathosterolosis, 607330
  • Intellectual disability
  • Cataracts
Tags
Green Green List (high evidence)
SCO1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 4, OMIM:619048
Tags
Green Green List (high evidence)
SCO2
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Mitochondrial Respiratory Chain Complex IV Deficiency
  • Isolated complex IV deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1, 604377
  • Myopia 6, 608908
Tags
Green Green List (high evidence)
SCP2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sterol carrier protein deficiency (Disorders of peroxisomal alpha-, beta and omega-oxidation)
Tags
Green Green List (high evidence)
SDHA
4 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex II deficiency, nuclear type 1, OMIM:252011
  • Neurodegeneration with ataxia and late-onset optic atrophy, OMIM:619259
  • Cardiomyopathy, dilated, 1GG, OMIM:613642
Tags
Green Green List (high evidence)
SDHAF1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial Diseases
  • Mitochondrial complex II deficiency, 252011
  • Complex II (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial Respiratory Chain Complex II Deficiency
  • Isolated complex II deficiency
Tags
Green Green List (high evidence)
SDHB
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex II deficiency, nuclear type 4, OMIM:619224
Tags
Green Green List (high evidence)
SDHD
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Complex II (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Mitochondrial Diseases
  • Isolated complex II deficiency
Tags
Green Green List (high evidence)
SEC23B
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Dyserythropoietic anemia, congenital, type II, OMIM:224100
  • COPII component SEC23B (Disorders of multiple glycosylation and other glycosylation pathways, V-ATPase deficiencies)
Tags
  • Q4_23_MOI
Green Green List (high evidence)
SERAC1
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome, OMIM:614739
  • Disorders of mitochondrial membrane lipids (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Green Green List (high evidence)
SETX
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Spinocerebellar ataxia, autosomal recessive 1, OMIM:606002
  • Amyotrophic lateral sclerosis 4, juvenile, OMIM:602433
Tags
Green Green List (high evidence)
SFXN4
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 18, 615578
Tags
Green Green List (high evidence)
SGSH
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mucopolysaccharidosis Type III
  • Mucopolysaccharidosis, Type III
  • Mucopolysaccharidosis Type IIIA
  • MPS IIIA, Sanfilippo A disease (Mucopolysaccharidoses)
  • MUCOPOLYSACCHARIDOSIS TYPE 3A
Tags
Green Green List (high evidence)
SHMT2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities, OMIM:619121
Tags
Green Green List (high evidence)
SI
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • CONGENITAL SUCRASE-ISOMALTASE DEFICIENCY 222900
  • Disaccharide intolerance 1 (Other carbohydrate disorders)
Tags
Green Green List (high evidence)
SKIV2L
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Infantile enterocolitis & monogenic inflammatory bowel disease
  • Trichohepatoenteric syndrome 2 (Other metabolic disorders)
Tags
  • new-gene-name
Green Green List (high evidence)
SLC12A3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Gitelman syndrome, OMIM: 263800
  • Gitelman syndrome, MONDO:0009904
Tags
  • monogenic-polygenic
Green Green List (high evidence)
SLC16A1
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Erythrocyte lactate transporter defect, OMIM:245340
  • Hyperinsulinemic hypoglycemia, familial, 7, OMIM:610021
  • Monocarboxylate transporter 1 deficiency, OMIM:616095
Tags
Green Green List (high evidence)
SLC17A5
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Salla disease, OMIM:604369
  • Sialic acid storage disorder, infantile, OMIM:269920
Tags
Green Green List (high evidence)
SLC18A2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Brain Dopamine Serotonin Vesicular Transport Disease (Other disorders of neurotransmitter metabolism)
  • Brain Dopamine Serotonin Vesicular Transport Disease (Other disorders of neurotransmitter metabolism) (NO phenotype number in OMIM)
Tags
Green Green List (high evidence)
SLC19A2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Thiamine-responsive megaloblastic anemia syndrome, 249270
  • Thiamine-responsive megaloblastic anemia syndrome (Disorders of thiamine metabolism)
Tags
Green Green List (high evidence)
SLC19A3
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Biotin-responsive basal ganglia disease (Disorders of thiamine metabolism)
  • Thiamine metabolism dysfunction syndrome 2 (biotin- or thiamine-responsive encephalopathy type 2),607483
Tags
Green Green List (high evidence)
SLC22A5
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Carnitine deficiency, systemic primary, OMIM:212140
  • systemic primary carnitine deficiency disease, MONDO:0008919
Tags
Green Green List (high evidence)
SLC25A1
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined D-2- and L-2-hydroxyglutaric aciduria, 615182
  • Disorders of mitochondrial protein transport
  • Riboflavin transporter deficiency (Disorders of riboflavin transport and metabolism)
Tags
Green Green List (high evidence)
SLC25A12
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Inherited white matter disorders
  • Epileptic encephalopathy, early infantile, 39 612949
  • Hypomyelination, global cerebral, 612949
  • Disorders of mitochondrial solute import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
SLC25A13
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Citrullinemia, adult-onset type II 603471
  • Citrullinemia, adult-onset type II, 603471Citrullinemia, type II, neonatal-onset, 605814
  • Citrullinemia Type 2 (Urea cycle disorders and inherited hyperammonaemias)
Tags
Green Green List (high evidence)
SLC25A15
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome, OMIM:238970
  • HHH syndrome (Urea cycle disorders and inherited hyperammonaemias)
Tags
Green Green List (high evidence)
SLC25A19
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Microcephaly, Amish type, 607196
  • Thiamine metabolism dysfunction syndrome 4 (progressive polyneuropathy type), 613710
  • Microcephaly, Amish type (Disorders of thiamine metabolism)
Tags
Green Green List (high evidence)
SLC25A20
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Carnitine-acylcarnitine translocase deficiency 212138
  • Carnitine acylcarnitine translocase deficiency (Disorders of carnitine transport and the carnitine cycle)
Tags
Green Green List (high evidence)
SLC25A22
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Epileptic encephalopathy, early infantile, 3, 609304
  • Disorders of mitochondrial solute import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
SLC25A26
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Combined oxidative phosphorylation deficiency 28
  • intra-mitochondrial methylation deficiency.
  • Intra-mitochondrial Methylation Deficiency leading to Clinical findings ranging from neonatal mortality resulting from respiratory insufficiency and hydrops to childhood acute episodes of cardiopulmonary failure and slowly progressive muscle weakness
Tags
Green Green List (high evidence)
SLC25A3
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial phosphate carrier deficiency, 610773
  • Mitochondrial phosphate carrier deficiency 610773
  • Disorders of mitochondrial solute import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Riboflavin transporter deficiency (Disorders of riboflavin transport and metabolism)
Tags
Green Green List (high evidence)
SLC25A32
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • ?Exercise intolerance, riboflavin-responsive
Tags
  • gene-checked
Green Green List (high evidence)
SLC25A38
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • severe, non-syndromic, microcytic/hypochromic sideroblastic anemia
  • Disorders of mitochondrial solute import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • nonsyndromic autosomal recessive congenital sideroblastic anemia
  • congenital sideroblastic anemias
Tags
Green Green List (high evidence)
SLC25A4
3 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Progressive External Ophthalmoplegia with Mitochondrial DNADeletions
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of mitochondrial DNA maintenance and integrity
  • Disorders of mitochondrial protein transport
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions 3, 609283
  • Mitochondrial DNA depletion syndrome 12 (cardiomyopathic type), 615418
Tags
Green Green List (high evidence)
SLC25A42
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Metabolic crises, recurrent, with variable encephalomyopathic features and neurologic regression 618416
  • mitochondrial myopathy
Tags
Green Green List (high evidence)
SLC25A46
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • optic atrophy spectrum disorder
Tags
Green Green List (high evidence)
SLC2A1
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Early onset dystonia
  • Cataracts
  • Glucose transporter 1 deficiency (blood-brain barrier) (Disorders of glucose transport)
  • Hereditary ataxia
  • Epileptic encephalopathy
  • Familial Genetic Generalised Epilepsies
  • GLUT1 deficiency syndrome 1, infantile onset, severe, 606777
  • GLUT1 deficiency syndrome 2, childhood onset, 612126
Tags
Green Green List (high evidence)
SLC2A2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease type XI (Glycogen storage disorders)
  • Glycogen Storage Disorders- Liver
  • Glucose transporter 2 deficiency (Disorders of glucose transport)
  • Fanconi-Bickel Syndrome
  • renal falcon syndrome, aminoaciduria phosphaturia, small stature, malabsorption, hepatomegaly and nephromegaly.
Tags
Green Green List (high evidence)
SLC30A10
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypermanganesemia with dystonia 1, OMIM:613280
Tags
Green Green List (high evidence)
SLC35A1
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIf 603585
  • Congenital disorder of glycosylation, type Iif, 603585
  • CMP-sialic acid transporter deficiency (Disorders of multiple glycosylation and other glycosylation pathways)
Tags
Green Green List (high evidence)
SLC35A2
3 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Congenital disorder of glycosylation, type IIm 300896
  • SLC35A2-CDG (other congenital disorders of glycosylation)
Tags
Green Green List (high evidence)
SLC35C1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • GDP-fucose transporter deficiency (Disorders of multiple glycosylation and other glycosylation pathways)
  • Congenital disorder of glycosylation, type IIc 266265
Tags
Green Green List (high evidence)
SLC35D1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • 9.2.3. O-xylosyl/N-acetylgalactosaminylglycan synthesis deficiencies (Disorders of protein O-glycosylation)
Tags
Green Green List (high evidence)
SLC37A4
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycogen storage disease Ib, OMIM:232220
  • Glycogen storage disease Ic, OMIM:232240
  • Congenital disorder of glycosylation, type IIw, OMIM:619525
Tags
Green Green List (high evidence)
SLC39A14
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hypermanganesemia with dystonia 2
Tags
Green Green List (high evidence)
SLC39A4
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Acrodermatitis enteropathica (Disorder of zinc metabolism)
  • Acrodermatitis enteropathica 201100 (Disorder of zinc metabolism)
Tags
Green Green List (high evidence)
SLC39A8
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIn 616721
  • Hypomagnesaemia with cerebellar atrophy, hypotonia, strabismus, developmental delay, short stature, mild skeletal dysplasia, and connective tissue abnormalities (Disorder of magnesium metabolism)
Tags
Green Green List (high evidence)
SLC3A1
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Renal tract calcification (or Nephrolithiasis/nephrocalcinosis)
  • Cystinuria (Disorders of amino acid transport)
  • Hypotonia-cystinuria syndrome (Disorders of amino acid transport)
Tags
Green Green List (high evidence)
SLC40A1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hemochromatosis, type 4 606069 (Disorder of iron metabolism)
  • Hereditary haemochromatosis Type 4 (Disorder of iron metabolism)
Tags
Green Green List (high evidence)
SLC46A1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Folate malabsorption, hereditary
  • Hereditary folate malabsorption (Disorders of folate metabolism and transport)
Tags
Green Green List (high evidence)
SLC52A2
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Brown-Vialetto-Van Laere syndrome 2 614707
Tags
Green Green List (high evidence)
SLC52A3
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Brown-Vialetto-Van Laere syndrome 1 211530
  • Fazio-Londe disease 211500
Tags
Green Green List (high evidence)
SLC5A1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Glucose/galactose malabsorption (Disorders of glucose transport)
  • Glucose/galactose malabsorption 606824 (Disorders of glucose transport)
Tags
Green Green List (high evidence)
SLC5A6
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodegeneration, infantile-onset, biotin-responsive, OMIM:618973
Tags
Green Green List (high evidence)
SLC6A19
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Iminoglycinuria, digenic
  • Hartnup disorder AD
Tags
Green Green List (high evidence)
SLC6A20
2 reviews
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hyperglycinuria
Tags
  • gene-checked
  • Q4_23_demote_red
  • Q4_23_expert_review
  • refuted
Green Green List (high evidence)
SLC6A3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Early onset dystonia
  • Dopamine transporter deficiency syndrome (Other disorders of neurotransmitter metabolism)
  • Parkinson Disease and Complex Parkinsonism
Tags
Green Green List (high evidence)
SLC6A8
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Creatine transporter deficiency (Mitochondrial respiratory chain disorders (caused by nuclear variants only), disorders of creatinine metabolism)
Tags
Green Green List (high evidence)
SLC7A7
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lysinuric protein intolerance (Disorders of amino acid transport)
  • Lysinuric protein intolerance 222700
Tags
Green Green List (high evidence)
SLC7A9
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Renal tract calcification (or Nephrolithiasis/nephrocalcinosis)
  • Cystinuria (Disorders of amino acid transport)
Tags
Green Green List (high evidence)
SMPD1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Niemann-Pick disease, type A, 257200
  • Niemann-Pick disease, type B, 607616
Tags
Green Green List (high evidence)
SPG7
5 reviews
2 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Spastic paraplegia 7, autosomal recessive, OMIM:607259
  • hereditary spastic paraplegia 7, MONDO:0011803
Tags
Green Green List (high evidence)
SPR
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Early onset dystonia
  • Sepiapterin reductase deficiency (Disorders of pterin metabolism)
  • Parkinson Disease and Complex Parkinsonism
Tags
  • treatable
Green Green List (high evidence)
SPTLC1
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Charcot-Marie-Tooth disease
  • Serine palmitoyl transferase deficiency (Disorders of complex lipid synthesis)
  • Familial dysautonomia
Tags
Green Green List (high evidence)
SPTLC2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Charcot-Marie-Tooth disease
  • Serine palmitoyl transferase deficiency (Disorders of complex lipid synthesis)
  • Familial dysautonomia
Tags
Green Green List (high evidence)
SRD5A3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • SRD5A3-CDG (Disorders of protein N-glycosylation)
  • Congenital disorder of glycosylation, type Iq 612379
Tags
Green Green List (high evidence)
SSBP1
3 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Optic atrophy 13 with retinal and foveal abnormalities, OMIM:165510
Tags
Green Green List (high evidence)
SSR4
0 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation, type Iy 300934
Tags
Green Green List (high evidence)
ST3GAL3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Developmental and epileptic encephalopathy 15, OMIM:615006
  • developmental and epileptic encephalopathy, 15, MONDO:0014003
  • Intellectual developmental disorder, autosomal recessive 12, OMIM:611090
  • intellectual disability, autosomal recessive 12, MONDO:0012612
Tags
Green Green List (high evidence)
ST3GAL5
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Lactosylceramide alpha-2,3-sialyltransferase deficiency (Disorders of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation)
  • Salt and pepper developmental regression syndrome 609056
  • GM3 synthase deficiency (Disorders of complex lipid synthesis)
Tags
Green Green List (high evidence)
STS
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • X-linked ichthyosis (Other disorders in the metabolism of sterols)
  • Autosomal recessive congenital ichthyosis
Tags
Green Green List (high evidence)
STT3A
3 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type Iw, autosomal dominant, OMIM:619714
  • Congenital disorder of glycosylation, type Iw, autosomal recessive, OMIM:615596
Tags
Green Green List (high evidence)
SUCLA2
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria), OMIM:612073
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of mitochondrial DNA maintenance and integrity
Tags
Green Green List (high evidence)
SUCLG1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Mitochondrial DNA Depletion Syndrome
  • Disorders of mitochondrial DNA maintenance and integrity
  • Mitochondrial DNA depletion syndrome 9 (encephalomyopathic type with methylmalonic aciduria),245400
Tags
Green Green List (high evidence)
SUMF1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple sulfatase deficiency
Tags
Green Green List (high evidence)
SUOX
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Sulfite oxidase deficiency
Tags
Green Green List (high evidence)
SURF1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Complex IV deficiency
  • Leigh Syndrome
  • Isolated complex IV deficiency
  • Leigh syndrome, due to COX deficiency, 256000
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
Tags
Green Green List (high evidence)
TACO1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • ?Mitochondrial complex IV deficiency, 220110
  • Isolated complex IV deficiency
  • Mitochondrial Respiratory Chain Complex IV Deficiency
  • Complex IV (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
Tags
Green Green List (high evidence)
TALDO1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Transaldolase deficiency
Tags
Green Green List (high evidence)
TANGO2
5 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Metabolic encephalomyopathic crises, recurrent, with rhabdomyolysis, cardiac arrhythmias, and neurodegeneration 616878
Tags
Green Green List (high evidence)
TARS2
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Combined oxidative phosphorylation deficiency 21, OMIM:615918
Tags
Green Green List (high evidence)
TAT
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Tyrosinaemia type II (Disorders of phenylalanine or tyrosine metabolism)
Tags
Green Green List (high evidence)
TAZ
3 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Disorders of mitochondrial membrane lipids (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Barth syndrome, 302060
  • Methylglutaconic aciduria type II, Barth syndrome (Organic acidurias)
  • Disorders of mitochondrial lipid metabolism
Tags
  • new-gene-name
Green Green List (high evidence)
TCN2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital neutropaenia
  • Intellectual disability
  • A- or hypo-gammaglobulinaemia
  • Agranulocytosis
  • Combined B and T cell defect
  • SCID
  • Transcobalamin II deficiency (Disorders of cobalamin absorption, transport and metabolism)
Tags
Green Green List (high evidence)
TFAM
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial DNA depletion syndrome 15 (hepatocerebral type), OMIM:617156
Tags
Green Green List (high evidence)
TFR2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hemochromatosis, type 3 604250
  • Hereditary haemochromatosis Type 3 (Disorder of iron metabolism)
Tags
Green Green List (high evidence)
TH
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Early onset dystonia
  • Tyrosine hydroxylase deficiency (Disorders of neurotransmitter metabolism, biogenic amines)
  • Parkinson Disease and Complex Parkinsonism
Tags
  • treatable
Green Green List (high evidence)
TIMM50
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review
  • Expert Review Green
  • Literature
Phenotypes
  • 3-methylglutaconic aciduria, type IX 617698
Tags
Green Green List (high evidence)
TIMM8A
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mohr-Tranebjaerg syndrome, 304700
  • Jensen syndrome, 311150
  • Disorders of the mitochondrial import system
  • Disorders of mitochondrial protein import (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Deafness, X-linked 1, progressive
Tags
Green Green List (high evidence)
TIMMDC1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex I deficiency, nuclear type 31, OMIM:618251
Tags
Green Green List (high evidence)
TK2
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial DNA depletion syndrome 2 (myopathic type), 609560
  • Mitochondrial DNA Depletion Syndrome
  • Disorders of mitochondrial DNA maintenance and integrity
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Thymidine kinase 2 deficiency (Disorders of pyrimidine metabolism)
Tags
Green Green List (high evidence)
TMEM126B
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Isolated complex I deficiency
Tags
Green Green List (high evidence)
TMEM165
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital disorder of glycosylation, type IIk 614727
  • CDG2K (other congenital disorders of glycosylation)
Tags
Green Green List (high evidence)
TMEM199
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Congenital disorder of glycosylation, type IIp 616829
Tags
Green Green List (high evidence)
TMEM5
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 10
Tags
  • new-gene-name
Green Green List (high evidence)
TMEM70
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 2, 614052
  • Isolated complex V deficiency
  • Complex V (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 2
  • Mitochondrial Complex V (ATP Synthase) Deficiency, Nuclear Type
Tags
Green Green List (high evidence)
TOP3A
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • NHS GMS
Phenotypes
  • ?Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 5, 618098
Tags
Green Green List (high evidence)
TPK1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Thiamine metabolism dysfunction syndrome 5 (episodic encephalopathy type), 614458
Tags
Green Green List (high evidence)
TPP1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Ceroid lipofuscinosis, neuronal, 2
  • CLN2, Jansky-Bielschowsky disease (Ceroid lipfuscinoses, neuronal)
  • Hereditary ataxia
Tags
Green Green List (high evidence)
TRAP1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • VACTERL
  • CAKUT
Tags
  • gene-checked
Green Green List (high evidence)
TREX1
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Familial cerebral small vessel disease
  • Intracerebral calcification disorders
  • (Disorders of nucleotide metabolism, Aicardi-Gouti res Syndrome) AGS1
  • Inherited white matter disorders
Tags
Green Green List (high evidence)
TRIM37
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mulibrey nanism (Other peroxisomal disorders)
  • Mulibrey nanism
Tags
Green Green List (high evidence)
TRIT1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 35, OMIM :617873
  • combined oxidative phosphorylation deficiency 35, MONDO:0054742
Tags
  • gene-checked
Green Green List (high evidence)
TRMT10C
3 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 30, 616974
Tags
Green Green List (high evidence)
TRMT5
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 26 616539
  • Multiple Respiratory-Chain Deficiencies
Tags
Green Green List (high evidence)
TRMU
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • {Deafness, mitochondrial, modifier of}, 580000
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Liver failure, transient infantile, 613070
Tags
Green Green List (high evidence)
TRNT1
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • congenital sideroblastic anemia with B cell immunodeficiency, fevers, and developmental delay (SIFD)
  • retinitis pigmentosa with erythrocytic microcytosis
Tags
Green Green List (high evidence)
TRPM6
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesemia 1, intestinal 602014
  • Hypomagnesaemia type 1, intestinal (Disorder of magnesium metabolism)
Tags
Green Green List (high evidence)
TSFM
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Combined oxidative phosphorylation deficiency 3, 610505
  • Combined oxidative phosphorylation deficiency 3 610505
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Green Green List (high evidence)
TTC19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex III deficiency
  • Mitochondrial Respiratory Chain Complex III Deficiency
  • Complex III (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Mitochondrial complex III deficiency, nuclear type 2, 615157
Tags
Green Green List (high evidence)
TTC37
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Infantile enterocolitis & monogenic inflammatory bowel disease
  • Trichohepatoenteric syndrome 1 (Other metabolic disorders)
Tags
  • new-gene-name
Green Green List (high evidence)
TTPA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • TTP1 deficiency (Other disorders of vitamins and cofactors)
  • Hereditary ataxia
Tags
Green Green List (high evidence)
TUFM
6 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 4 610678
  • Combined oxidative phosphorylation deficiency 4, 610678
Tags
Green Green List (high evidence)
TUSC3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual developmental disorder, autosomal recessive 7, OMIM:611093
Tags
Green Green List (high evidence)
TWNK
5 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial DNA depletion syndrome 7 (hepatocerebral type), OMIM:271245
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 3, OMIM:609286
  • Perrault syndrome 5, OMIM:616138
Tags
Green Green List (high evidence)
TYMP
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Thymidine phosphorylase deficiency (Disorders of pyrimidine metabolism)
  • Required for mtDNA maintenance (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Disorders of mitochondrial DNA maintenance and integrity
  • Mitochondrial Neurogastrointestinal Encephalopathy Disease
  • Mitochondrial DNA depletion syndrome 1 (MNGIE type), 603041
Tags
Green Green List (high evidence)
UGT1A1
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Crigler-Najjar syndrome, type I 218800
  • Bilirubin UDP-glucuronosyltransferase 1 deficiency (Disorders of bile acid metabolism and transport)
  • Crigler-Najjar syndrome, type II 606785
Tags
Green Green List (high evidence)
UMOD
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Cystic kidney disease
  • Unexplained kidney failure in young people
  • Familial juvenile hyperuricaemic nephropathy (Disorders of purine metabolism)
Tags
Green Green List (high evidence)
UMPS
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Orotic aciduria
  • Orotic aciduria (Disorders of pyrimidine metabolism)
Tags
Green Green List (high evidence)
UPB1
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Beta-ureidopropionase deficiency (Disorders of pyrimidine metabolism)
  • Beta-ureidopropionase deficiency 613161
Tags
Green Green List (high evidence)
UQCC2
5 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 7, OMIM:615824
Tags
Green Green List (high evidence)
UQCRB
5 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 3, OMIM:615158
  • Complex III (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Isolated complex III deficiency
Tags
Green Green List (high evidence)
UQCRC2
6 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 5, OMIM:615160
Tags
Green Green List (high evidence)
UQCRFS1
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 10, OMIM:618775
Tags
Green Green List (high evidence)
UROD
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Porphyria cutanea tarda (Porphyrias with erosive photodermatosis)
Tags
Green Green List (high evidence)
UROS
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Congenital erythropoietic porphyria (Porphyrias with erosive photodermatosis)
  • Porphyria, congenital erythropoietic 263700
Tags
Green Green List (high evidence)
VARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Combined oxidative phosphorylation deficiency 20, 615917
Tags
Green Green List (high evidence)
VIPAS39
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Inherited bleeding disorders
  • ARC Syndrome (Other metabolic disorders)
  • Arthrogryposis
Tags
Green Green List (high evidence)
VKORC1
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Vitamin K-dependent clotting factors, combined deficiency of, 2, OMIM:607473
Tags
Green Green List (high evidence)
VPS33B
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Inherited bleeding disorders
  • Unexplained kidney failure in young people
  • CAKUT
  • ARC Syndrome (Other metabolic disorders)
  • Arthrogryposis
Tags
Green Green List (high evidence)
WARS2
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Neurodevelopmental disorder, mitochondrial, with abnormal movements and lactic acidosis, with or without seizures, 617710
Tags
Green Green List (high evidence)
WDR45
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Neurodegeneration with brain iron accumulation 5
Tags
Green Green List (high evidence)
WFS1
3 reviews
1 green 1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Wolfram syndrome 1, OMIM:222300
  • Wolfram-like syndrome, autosomal dominant, OMIM:614296
  • Diabetes mellitus, noninsulin-dependent, association with, OMIM:125853
Tags
Green Green List (high evidence)
XDH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Xanthinuria type II (Disorders of purine metabolism)
  • Xanthinuria type I (Disorders of purine metabolism)
Tags
Green Green List (high evidence)
XPNPEP3
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Nephronophthisis-like nephropathy 1 OMIM:613159
  • nephronophthisis-like nephropathy 1 MONDO:0013163
Tags
Green Green List (high evidence)
XYLT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Desbuquois dysplasia 2, 615777
Tags
Green Green List (high evidence)
XYLT2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Spondyloocular syndrome
Tags
Green Green List (high evidence)
YARS2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • London North GLH
  • NHS GMS
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • Required for mitochondrial gene expression (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
  • Myopathy, lactic acidosis, and sideroblastic anemia 2, 613561
Tags
Amber Amber List (moderate evidence)
ACACA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Acetyl-CoA carboxylase deficiency, OMIM: 613933
Tags
  • Q4_23_NHS_review
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
ALG13
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Congenital disorder of glycosylation, type Is 300884
  • Epileptic encephalopathy, early infantile, 36 300884
Tags
Amber Amber List (moderate evidence)
ALG2
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Myasthenic syndrome, congenital, 14, with tubular aggregates 616228
  • Mannosyltransferase 2 deficiency (Disorders of protein N-glycosylation)
  • ?Congenital disorder of glycosylation, type Ii 607906
Tags
Amber Amber List (moderate evidence)
ARSK
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Mucopolysaccharidoses with short stature, coarse facial features and dysostosis multiplex
Tags
Amber Amber List (moderate evidence)
ATP5B
4 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • ?Hypermetabolism due to uncoupled mitochondrial oxidative phosphorylation 2, OMIM: 620085
Tags
  • new-gene-name
Amber Amber List (moderate evidence)
ATP5E
4 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial complex V (ATP synthase) deficiency, nuclear type 3, OMIM:614053
  • mitochondrial complex V (ATP synthase) deficiency nuclear type 3, MONDO:0013547
Tags
  • new-gene-name
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
CLCN7
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Hypopigmentation, organomegaly, and delayed myelination and development, OMIM:618541
Tags
  • watchlist
Amber Amber List (moderate evidence)
COA3
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Ostergaard et al., 2015, J. Med. Genet., 52, 203-207.
Tags
Amber Amber List (moderate evidence)
COASY
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Neurodegeneration with brain iron accumulation 6, 615643
  • Pontocerebellar hypoplasia, type 12, 618266
Tags
Amber Amber List (moderate evidence)
COG3
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Congenital disorder of glycosylation, type IIbb, OMIM:620546
Tags
Amber Amber List (moderate evidence)
COX4I2
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Exocrine pancreatic insufficiency, dyserythropoietic anemia, and calvarial hyperostosis 612714
Tags
Amber Amber List (moderate evidence)
COX5A
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • ?Mitochondrial complex IV deficiency, nuclear type 20, OMIM:619064
  • Mitochondrial complex IV deficiency, nuclear type 23, MONDO:0859520
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
CSTB
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Epilepsy, progressive myoclonic 1A (Unverricht and Lundborg), OMIM:254800
Tags
  • nucleotide-repeat-expansion
Amber Amber List (moderate evidence)
CTSF
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 13, Kufs type OMIM:615362
  • neuronal ceroid lipofuscinosis 13 MONDO:0014147
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
CYCS
4 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • Thrombocytopenia 4, OMIM:612004
Tags
Amber Amber List (moderate evidence)
DCC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Gaze palsy, familial horizontal, with progressive scoliosis, 2
Tags
Amber Amber List (moderate evidence)
DHDDS
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Retinitis pigmentosa 59, OMIM:613861
  • ?Congenital disorder of glycosylation, type 1bb, OMIM:613861
Tags
Amber Amber List (moderate evidence)
EDEM3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Congenital disorder of glycosylation, type 2V, OMIM:619493
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
EHHADH
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • ?Fanconi renotubular syndrome 3, OMIM:615605
  • L-bifunctional protein deficiency
  • Metabolic acidosis
  • Increased amino acids in urine
Tags
Amber Amber List (moderate evidence)
ERAL1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Perrault syndrome 6, 617565
Tags
Amber Amber List (moderate evidence)
FUK
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Congenital disorder of glycosylation with defective fucosylation 2 OMIM:618324
  • congenital disorder of glycosylation with defective fucosylation 2 MONDO:0020777
Tags
  • new-gene-name
  • watchlist
Amber Amber List (moderate evidence)
GATC
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Combined oxidative phosphorylation deficiency 42, OMIM:618839
Tags
Amber Amber List (moderate evidence)
GPIHBP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Hyperlipoproteinemia, type 1D OMIM:615947
  • hyperlipoproteinemia, type 1D MONDO:0014412
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
GRN
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Ceroid lipofuscinosis, neuronal, 11 OMIM:614706
  • neuronal ceroid lipofuscinosis 11 MONDO:0013866
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
GSTZ1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Eligibility statement prior genetic testing
  • Expert Review
  • Expert Review Amber
  • Literature
Phenotypes
  • [Maleylacetoacetate isomerase deficiency], OMIM:617596
Tags
  • Q1_24_NHS_review
  • Q1_24_promote_green
Amber Amber List (moderate evidence)
HSPA9
5 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Even-plus syndrome, OMIM:616854
Tags
  • Q4_23_NHS_review
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
LDHD
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • D-lactic aciduria with susceptibility to gout, OMIM:245450
  • lactic aciduria due to D-lactic acid, MONDO:0009505
Tags
Amber Amber List (moderate evidence)
LIPC
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Hepatic lipase deficiency, 614025
  • [High density lipoprotein cholesterol level QTL 12] 612797
  • {Diabetes mellitus, noninsulin-dependent} 125853
Tags
Amber Amber List (moderate evidence)
LMF1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Lipase deficiency, combined OMIM:246650
  • lipase deficiency, combined MONDO:0009527
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
MAN2B2
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • congenital disorder of glycosylation, MONDO:0015286
Tags
Amber Amber List (moderate evidence)
MRM2
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • ?Mitochondrial DNA depletion syndrome 17, OMIM:618567
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
MRPS14
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • ?Combined oxidative phosphorylation deficiency 38, OMIM:618378
Tags
Amber Amber List (moderate evidence)
MRPS16
5 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Combined oxidative phosphorylation deficiency 2 610498
Tags
Amber Amber List (moderate evidence)
MRPS7
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Amber Amber List (moderate evidence)
MT-RNR2
3 reviews
1 green
MITOCHONDRIAL
Sources
  • Expert Review Amber
Tags
Amber Amber List (moderate evidence)
MT-TT
3 reviews
1 green
MITOCHONDRIAL
Sources
  • Expert Review Amber
Tags
Amber Amber List (moderate evidence)
NDUFB7
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • ?Mitochondrial complex I deficiency, nuclear type 39, OMIM:620135
Tags
  • watchlist
Amber Amber List (moderate evidence)
NDUFB9
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • ?Mitochondrial complex I deficiency, nuclear type 24 618245
Tags
Amber Amber List (moderate evidence)
NUS1
3 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • Intellectual developmental disorder, autosomal dominant 55, with seizures, OMIM:617831
  • ?Congenital disorder of glycosylation, type 1aa, OMIM:617082
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
OPLAH
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • 5-oxoprolinase deficiency 260005
Tags
Amber Amber List (moderate evidence)
PET117
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • Mitochondrial complex IV deficiency, nuclear type 19, OMIM:619063
Tags
Amber Amber List (moderate evidence)
PIGM
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Glycosylphosphatidylinositol deficiency, OMIM:610293
Tags
  • non-coding-known-pathogenic
  • promoter
  • Q4_23_NHS_review
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
PITRM1
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • mental retardation, spinocerebellar ataxia, cognitive decline and psychosis
Tags
Amber Amber List (moderate evidence)
PSPH
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Phosphoserine phosphatase deficiency 614023
Tags
Amber Amber List (moderate evidence)
PTCD3
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • ?Combined oxidative phosphorylation deficiency 51, OMIM:619057
  • combined oxidative phosphorylation deficiency 51, MONDO:0033631
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
QARS
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
  • new-gene-name
Amber Amber List (moderate evidence)
RANBP2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Acute necrotizing encephalopathy (Other metabolic disorders)
Tags
Amber Amber List (moderate evidence)
RNASET2
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • RNASET2-deficient cystic leukoencephalopathy (Disorders of nucleotide metabolism)
  • Inherited white matter disorders
Tags
Amber Amber List (moderate evidence)
RYR1
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Rhabdomyolysis and metabolic muscle disorders
Tags
Amber Amber List (moderate evidence)
SDHAF2
4 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex II deficiency
  • Complex II (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS assembly factors)
  • Neuro-endocrine Tumours- PCC and PGL
  • Multiple endocrine tumours
  • Multiple Tumours
Tags
Amber Amber List (moderate evidence)
SDHC
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial Diseases
  • Isolated complex II deficiency
  • Neuro-endocrine Tumours- PCC and PGL
  • Multiple endocrine tumours
  • Complex II (Mitochondrial respiratory chain disorders (caused by nuclear variants only), OXPHOS structural subunits)
  • Multiple Tumours
Tags
Amber Amber List (moderate evidence)
SLC31A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Neurodevelopmental disorder, MONDO:0700092
Tags
Amber Amber List (moderate evidence)
SSR3
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Congenital disorder of glycosylation
Tags
Amber Amber List (moderate evidence)
STAT2
7 reviews
3 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Immunodeficiency 44 616636
  • elongated mitochondria
  • severe neurological deterioration following viral infection
Tags
Amber Amber List (moderate evidence)
TKFC
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Triokinase and FMN cyclase deficiency syndrome, 618805
Tags
  • watchlist
Amber Amber List (moderate evidence)
TMEM65
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • TMEM65 related mitochondrial encephalopmyopathy
Tags
Amber Amber List (moderate evidence)
TRAPPC11
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Muscular dystrophy, limb-girdle, autosomal recessive 18 OMIM:615356
  • autosomal recessive limb-girdle muscular dystrophy type 2S MONDO:0014144
Tags
Amber Amber List (moderate evidence)
UQCC3
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • ?Mitochondrial complex III deficiency, nuclear type, 616111
  • Isolated complex III deficiency
Tags
Amber Amber List (moderate evidence)
UQCRC1
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
Phenotypes
  • Parkinsonism with polyneuropathy, OMIM:619279
Tags
Amber Amber List (moderate evidence)
UQCRQ
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 4, 615159
Tags
Amber Amber List (moderate evidence)
UROC1
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Urocanase deficiency (Disorders of histidine, tryptophan or lysine metabolism)
Tags
Amber Amber List (moderate evidence)
VPS16
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Mucopolysaccharidosis-like syndrome (biallelic)
  • Dystonia Associated with Lysosomal Abnormalities (monoallelic)
  • Dystonia 30, OMIM:619291
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
VPS33A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Mucopolysaccharidosis-plus syndrome OMIM:617303
  • mucopolysaccharidosis-like syndrome with congenital heart defects and hematopoietic disorders MONDO:0015012
Tags
  • Q4_23_promote_green
Amber Amber List (moderate evidence)
YME1L1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Amber
Phenotypes
  • ?Optic atrophy 11, 617302
Tags
Red Red List (low evidence)
ABCG2
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Primary idiopathic gout (Disorders of purine metabolism)
  • [Junior blood group system] 614490
  • [Uric acid concentration, serum, QTL1] 138900
Tags
Red Red List (low evidence)
ACAT2
2 reviews
Unknown
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • ?ACAT2 deficiency, OMIM:614055
  • Increased serum lactate and pyruvate
  • High levels of ketones
  • Low levels of cytosolic acetoacetyl-CoA thiolase
  • Hypotonia
  • Severe developmental delay
Tags
Red Red List (low evidence)
ALDH1B1
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Succinic semialdehyde dehydrogenase deficiency
Tags
Red Red List (low evidence)
ALG10
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Progressive myoclonus epilepsy
  • CDG
Tags
Red Red List (low evidence)
AMPD1
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Myoadenylate deaminase deficiency (Disorders of purine metabolism)
  • Myopathy due to myoadenylate deaminase deficiency 615511
Tags
Red Red List (low evidence)
AOX1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Xanthinuria type II (Disorders of purine metabolism)
Tags
Red Red List (low evidence)
ARSG
1 review
1 red
Unknown
Sources
  • Expert Review Red
Phenotypes
  • neuronal ceroid lipofuscinosis
Tags
Red Red List (low evidence)
ATAD3B
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Influence on AIDS progression
  • No OMIM phenotype
Tags
Red Red List (low evidence)
ATP5C1
3 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
  • new-gene-name
Red Red List (low evidence)
ATP5G1
3 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
  • new-gene-name
Red Red List (low evidence)
ATP5G2
3 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
  • new-gene-name
Red Red List (low evidence)
ATP5I
3 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
  • new-gene-name
Red Red List (low evidence)
ATP5J
3 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
  • new-gene-name
Red Red List (low evidence)
ATXN7
2 reviews
1 red
Other
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Spinocerebellar ataxia 7, OMIM:164500
  • Mitochondrial respiratory chain disorders (caused by nuclear variants only)
Tags
  • currently-ngs-unreportable
  • nucleotide-repeat-expansion
Red Red List (low evidence)
BCAT1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Branched-chain amino acid transferase (Disorder of branched-chain amino acid metabolism not classified as organic aciduria)
Tags
Red Red List (low evidence)
BOLA1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
BOLA2
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
C1GALT1C1
1 review
Other - please specify in evaluation comments
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • COSMC-CDG (Disorders of protein O-glycosylation, O-N-acetylgalactosaminylglycan synthesis deficiencies)
  • Tn polyagglutination syndrome, somatic
  • Tn polyagglutination syndrome, somatic 300622
Tags
Red Red List (low evidence)
CAD
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Congenital disorder of glycosylation, type Iz 616457
Tags
Red Red List (low evidence)
CAMLG
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Literature
Phenotypes
  • Congenital disorder of glycosylation, type IIz, OMIM:620201
Tags
Red Red List (low evidence)
CD320
1 review
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria due to transcobalamin receptor defect
Tags
Red Red List (low evidence)
CEP89
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • isolated complex IV deficiency, intellectual disability and multisystemic problems
Tags
Red Red List (low evidence)
CETP
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • [High density lipoprotein cholesterol level QTL 10] 143470
  • Familial hyperalphalipoproteinaemia (Disorders of high density lipoprotein metabolism)
  • Hyperalphalipoproteinemia 143470
Tags
Red Red List (low evidence)
CLCN6
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Other
Phenotypes
  • Neurodegeneration, childhood-onset, hypotonia, respiratory insufficiency and brain imaging abnormalities OMIM:619173
Tags
Red Red List (low evidence)
CLPS
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pancreatic colipase deficiency (Other disorders of lipid and lipoprotein metabolism)
Tags
Red Red List (low evidence)
CNDP1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Carnosinaemia (Other disorders of peptide metabolism)
Tags
Red Red List (low evidence)
COA1
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COA5
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • ?Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 3 616500
Tags
Red Red List (low evidence)
COG2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Congenital disorder of glycosylation, type IIq, 617395
Tags
Red Red List (low evidence)
COX4I1
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Mitochondrial Diseases
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX5B
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX6C
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX7A1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX7A2
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX7B2
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • ?{Nasopharyngeal carcinoma, susceptibility to}, 607107
Tags
Red Red List (low evidence)
COX7C
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
COX8A
3 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Mitochondrial complex IV deficiency 220110
Tags
Red Red List (low evidence)
CYP7A1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Cholesterol 7-alpha-hydroxylase deficiency (Disorders of bile acid biosynthesis)
  • Hypercholesterolemia due to cholesterol 7alpha-hydroxylase deficiency
Tags
Red Red List (low evidence)
DDOST
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Congenital disorder of glycosylation, type Ir 614507
Tags
Red Red List (low evidence)
DHFR2
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
DLST
3 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • No OMIM phenotype?Familial Alzheimer disease
Tags
Red Red List (low evidence)
DMGDH
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Dimethylglycine dehydrogenase deficiency 605850
  • Dimethylglycinuria (Disorders and variants of enzymes that oxidise xenobiotics other than cytochrome P450)
Tags
Red Red List (low evidence)
DPEP1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Cysteinylglycinase deficiency (Disorders of the gamma-glutamyl cycle)
Tags
Red Red List (low evidence)
DTD1
0 reviews
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
ECSIT
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
EGF
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesaemia type 4, renal (Disorder of magnesium metabolism)
Tags
Red Red List (low evidence)
ERCC6L2
0 reviews
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
FAR1
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Peroxisomal fatty acyl-CoA reductase 1 disorder, OMIM:616154
Tags
Red Red List (low evidence)
FBP2
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • isolated lactic acidosis
Tags
Red Red List (low evidence)
FOLR2
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
FOLR3
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
FXYD2
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypomagnesemia 2, renal 154020
  • Hypomagnesaemia type 2, renal (Disorder of magnesium metabolism)
Tags
Red Red List (low evidence)
GALNT12
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • (GALNT12-CDG (Disorders of protein O-glycosylation, O-N-acetylgalactosaminylglycan synthesis deficiencies))
  • GALNT12-CDG (Disorders of protein O-glycosylation, O-N-acetylgalactosaminylglycan synthesis deficiencies)
  • {Colorectal cancer, susceptibility to, 1} 608812
Tags
Red Red List (low evidence)
GATB
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Combined oxidative phosphorylation deficiency 41, OMIM:618838
Tags
Red Red List (low evidence)
GGT1
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Gamma-glutamyl transpeptidase deficiency
  • Glutathionuria (Disorders of the gamma-glutamyl cycle)
Tags
Red Red List (low evidence)
GLS_GCA
STR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Global developmental delay, progressive ataxia, and elevated glutamine, OMIM:618412
Tags
  • NGS Not Validated
  • STR
Red Red List (low evidence)
HAL
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Histidinaemia (Disorders of histidine, tryptophan or lysine metabolism)
Tags
Red Red List (low evidence)
HYKK
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hydroxylysinuria (Disorders of histidine, tryptophan or lysine metabolism)
Tags
Red Red List (low evidence)
IDH3B
2 reviews
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
KCTD7
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Other
Phenotypes
  • Epilepsy, progressive myoclonic 3, with or without intracellular inclusions OMIM:611726
  • progressive myoclonic epilepsy type 3 MONDO:0012721
Tags
Red Red List (low evidence)
KHK
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Essential fructosuria (Disorders of fructose metabolism)
Tags
Red Red List (low evidence)
LACTB
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
LFNG
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • O-fucose-specific beta-1,3-N-acetylglucosaminyltransferase deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • ?Spondylocostal dysostosis 3, autosomal recessive 609813
  • ?Spondylocostal dysostosis 3, autosomal recessive, 609813
  • LFNG-CDG (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
Tags
Red Red List (low evidence)
LIPI
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • {Hypertriglyceridemia, susceptibility to}, 145750
  • Familial hypertriglyceridaemia (Inherited hypertriglyceridaemias)
Tags
Red Red List (low evidence)
MRPL12
4 reviews
1 green 2 red
Unknown
Sources
  • Expert list
  • Expert Review Red
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
  • No OMIM phenotype
Tags
Red Red List (low evidence)
MRPL40
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
MRPS23
4 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • hepatic disease and combined respiratory chain complex deficiencies
Tags
Red Red List (low evidence)
MTHFD1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • {Abruptio placentae, susceptibility to}
  • {Spina bifida, folate-sensitive, susceptibility to} 601634 AR
Tags
Red Red List (low evidence)
NAT8L
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?N-acetylaspartate deficiency 614063
Tags
Red Red List (low evidence)
NDUFA3
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFA5
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFA7
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFAB1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFB1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFB2
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFB4
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFB5
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFB6
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFC1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFS5
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Mitochondrial Diseases
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NDUFV3
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Mitochondrial Diseases
  • No OMIM phenotype
  • Isolated complex I deficiency
Tags
Red Red List (low evidence)
NT5C
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyrimidine - 5 - nucleotidase deficiency (Disorders of pyrimidine metabolism)
Tags
Red Red List (low evidence)
NUP62
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Infantile striatal necrosis (Other metabolic disorders)
  • Striatonigral degeneration, infantile, 271930
Tags
Red Red List (low evidence)
OSTC
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Oligosaccharyltransferase complex-congenital disorders of glycosylation
Tags
Red Red List (low evidence)
OXA1L
2 reviews
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
PCYT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Literature
Phenotypes
  • Global developmental delay
  • Developmental regression
  • Intellectual disability
  • Spastic paraparesis
  • Seizures
  • Spastic tetraparesis
  • Cerebral atrophy
  • Cerebellar atrophy
Tags
Red Red List (low evidence)
PDK1
3 reviews
1 green 1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • No OMIM phenotype
  • Pyruvate dehydrogenase kinase deficiency (Disorders of pyruvate metabolism)
Tags
Red Red List (low evidence)
PDK2
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • No OMIM phenotype
  • Pyruvate dehydrogenase kinase deficiency (Disorders of pyruvate metabolism)
Tags
Red Red List (low evidence)
PDK4
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • No OMIM phenotype
  • Pyruvate dehydrogenase kinase deficiency (Disorders of pyruvate metabolism)
Tags
Red Red List (low evidence)
PDP2
4 reviews
2 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase phosphatase deficiency (Disorders of pyruvate metabolism)
Tags
Red Red List (low evidence)
PDPR
5 reviews
1 green 1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pyruvate dehydrogenase phosphatase deficiency (Disorders of pyruvate metabolism)
Tags
Red Red List (low evidence)
PDXK
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pryridoxal kinase deficiency (Disorders of pyridoxine metabolism)
Tags
Red Red List (low evidence)
PEX11A
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Zellweger syndrome
  • peroxisome proliferation
  • mild peroxisomal biogenesis defect
Tags
Red Red List (low evidence)
PHKG1
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
PHYKPL
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hydroxylysinuria (Disorders of histidine, tryptophan or lysine metabolism)
  • [?Phosphohydroxylysinuria] 615011
Tags
Red Red List (low evidence)
PIGW
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Hyperphosphatasia with mental retardation syndrome 5
Tags
Red Red List (low evidence)
PNLIP
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Pancreatic triacylglycerol lipase deficiency (Other disorders of lipid and lipoprotein metabolism)
  • Pancreatic lipase deficiency 614338
Tags
Red Red List (low evidence)
PNPLA4
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
POP1
1 review
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
PPM1B
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypotonia-cystinuria syndrome (Mitochondrial respiratory chain disorders (caused by nuclear variants only))
Tags
Red Red List (low evidence)
PPM1K
1 review
1 red
Unknown
Sources
  • Expert Review Red
Phenotypes
  • ?Maple syrup urine disease, mild variant 615135
Tags
Red Red List (low evidence)
PREPL
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hypotonia-cystinuria syndrome 606407
  • Hypotonia-cystinuria syndrome (Disorders of amino acid transport)
Tags
Red Red List (low evidence)
PTCD1
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Red Red List (low evidence)
PTPRZ1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Hyperlysinaemia (Disorders of histidine, tryptophan or lysine metabolism)
  • {H. pylori infection, susceptibility to} 600263
Tags
Red Red List (low evidence)
RNASEH2A
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • Intracerebral calcification disorders
  • (Disorders of nucleotide metabolism, Aicardi-Gouti res Syndrome) AGS4
  • Inherited white matter disorders
Tags
  • Q1_24_NHS_review
  • Q1_24_promote_green
Red Red List (low evidence)
RNASEH2B
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Aicardi-Goutieres syndrome 2, OMIM:610181
Tags
  • Q1_24_NHS_review
  • Q1_24_promote_green
Red Red List (low evidence)
RNASEH2C
3 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Intellectual disability
  • (Disorders of nucleotide metabolism, Aicardi-Gouti res Syndrome) AGS3
  • Intracerebral calcification disorders
  • Inherited white matter disorders
Tags
  • Q1_22_NHS_review
  • Q1_24_promote_green
Red Red List (low evidence)
ROBO3
4 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Gaze palsy, familial horizontal, with progressive scoliosis, 1, 607313
Tags
Red Red List (low evidence)
SARDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • [Sarcosinemia] 268900
  • Sarcosinaemia (Disorders of serine, glycine or glycerate metabolism)
Tags
Red Red List (low evidence)
SCARB1
1 review
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • [High density lipoprotein cholesterol level QTL6] 610762
  • Scavenger receptor class B type I deficiency (Inherited hypolipidaemias)
Tags
Red Red List (low evidence)
SHPK
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Sedoheptulokinase deficiency (Other metabolic disorders)
  • [Sedoheptulokinase deficiency] 617213
Tags
Red Red List (low evidence)
SLC22A4
1 review
1 red
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
SLC25A2
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Riboflavin transporter deficiency (Disorders of riboflavin transport and metabolism)
Tags
Red Red List (low evidence)
SLC25A40
1 review
Unknown
Sources
  • Expert Review Red
Tags
Red Red List (low evidence)
SLC26A6
1 review
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Literature
Phenotypes
  • Enteric hyperoxaluria and nephrolithiasis
Tags
  • watchlist
Red Red List (low evidence)
SLC27A5
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Bile acid CoA ligase deficiency (Disorders of bile acid biosynthesis)
Tags
Red Red List (low evidence)
SLC35A3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Arthrogryposis, mental retardation, and seizures
Tags
Red Red List (low evidence)
SLC36A2
2 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Iminoglycinuria, digenic 242600
  • Hyperglycinuria 138500
  • Hyperglycinuria AR
Tags
Red Red List (low evidence)
SLC52A1
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
Phenotypes
  • Riboflavin deficiency 615026
Tags
Red Red List (low evidence)
SLCO1B1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Hyperbilirubinemia, Rotor type, digenic
Tags
Red Red List (low evidence)
SLCO1B3
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Hyperbilirubinemia, Rotor type, digenic
Tags
Red Red List (low evidence)
SRRT
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
Phenotypes
  • Multiple respiratory chain complex deficiencies (disorders of protein synthesis)
Tags
Red Red List (low evidence)
STT3B
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • ?Congenital disorder of glycosylation, type Ix 615597
Tags
Red Red List (low evidence)
SUCLG2
2 reviews
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Succinyl-CoA synthetase deficiency (Other metabolic disorders)
  • No OMIM phenotype
Tags
Red Red List (low evidence)
SUGCT
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Glutaric aciduria type III (Organic acidurias)
  • Glutaric aciduria type III 231690
Tags
Red Red List (low evidence)
TCN1
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Haptocorrin deficiency (Disorders of cobalamin absorption, transport and metabolism)
  • No OMIM number
Tags
Red Red List (low evidence)
TDO2
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • No OMIM number
  • Tryptophanaemia (Disorders of histidine, tryptophan or lysine metabolism)
Tags
Red Red List (low evidence)
TIMM44
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
TM6SF2
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Red
Phenotypes
  • non-alcoholic fatty liver disease
Tags
Red Red List (low evidence)
TMEM126A
3 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Optic atrophy 7 612989
Tags
Red Red List (low evidence)
TPMT
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Thiopurine S-methyltransferase deficiency (Disorders of purine metabolism)
  • {Thiopurines, poor metabolism of, 1} 610460
Tags
Red Red List (low evidence)
TREH
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Trehalase deficiency (Other carbohydrate disorders)
Tags
Red Red List (low evidence)
TXN2
4 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • infantile-onset neurodegenerative disorder with severe cerebellar atrophy, epilepsy, dystonia, optic atrophy, and peripheral neuropathy
  • ?Combined oxidative phosphorylation deficiency 29
Tags
Red Red List (low evidence)
UQCRH
1 review
Unknown
Sources
  • Expert Review Red
Phenotypes
  • No OMIM phenotype
Tags
Red Red List (low evidence)
USF1
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • London North GLH
  • NHS GMS
Phenotypes
  • Familial combined hyperlipoproteinaemia (Inherited mixed hyperlipidaemias)
Tags
Red Red List (low evidence)
VPS13C
5 reviews
1 green 2 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
No list No list
IDH1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Literature
Phenotypes
  • Failure to thrive
  • Psychomotor delay
  • Feeding difficulties
  • Increased D-2-Hydroxyglutaric acid in urine
Tags

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