Pain syndromes
Gene: ATL3EnsemblGeneIds (GRCh38): ENSG00000184743
EnsemblGeneIds (GRCh37): ENSG00000184743
OMIM: 609369, Gene2Phenotype
ATL3 is in 5 panels
2 reviews
Arianna Tucci (Genomics England Curator)
Marked as green despite only 2 family described with the phenotype, because of the functional evidence, plus mutations in ATL1, a GTPase of similar function, is known to cause both hereditary spastic paraplegia and HSN1. Gene associated with the phenotype in OMIMCreated: 13 Jul 2017, 9:34 a.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Louise Daugherty (Genomics England Curator)
Comment on phenotypes: reformatted phenotype listingCreated: 19 Sep 2017, 11:33 a.m.
Comment on list classification: changed from Amber to Green after review with clinical teamCreated: 18 Jul 2017, 11:16 a.m.
To be reviewed by clinical team regarding the pertinence of this geneCreated: 9 Jul 2017, 4:57 p.m.
2 unrelated cases, PMID:24459106 (large 4 generation family) + 1 (3 affecteds)Created: 9 Jul 2017, 4:30 p.m.
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Phenotypes
Neuropathy, hereditary sensory, type IF; 615632; HSN1F
Publications
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
- Sources
-
- Expert Review Green
- Review
- Literaure
- Phenotypes
-
- Neuropathy, hereditary sensory, type IF, 615632
- HSN1F
- OMIM
- 609369
- Clinvar variants
- Variants in ATL3
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
panel promoted to version 1
Louise Daugherty (Genomics England Curator)19th September 2017. Panel reviews were assessed, and panel was revised according to reviews and further curation.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for ATL3 were set to Neuropathy, hereditary sensory, type IF, 615632; HSN1F
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Changed Gene Name
Louise Daugherty (Genomics England Curator)ALTL3* was changed to ATL3
Added New Source
Louise Daugherty (Genomics England Curator)ALTL3* was added to Pain syndromespanel. Sources: Literaure,Review
Created
Louise Daugherty (Genomics England Curator)ALTL3* was created by LouiseD