Pain syndromes
Gene: SCN9AEnsemblGeneIds (GRCh38): ENSG00000169432
EnsemblGeneIds (GRCh37): ENSG00000169432
OMIM: 603415, Gene2Phenotype
SCN9A is in 13 panels
3 reviews
Louise Daugherty (Genomics England Curator)
Different disorders depending on functional status of gene product: Congenital insensitivity to pain homozygous LOF, Primary erythromelalgia heterozygous GOF, Paroxysmal extreme pain disorder heterozygous GOF. REMOVED Generalized epilepsy with febrile seizures plus, type 7 Familial febrile seizures-3B not applicatble to this panel.Created: 9 Jul 2017, 4:30 p.m.
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Erythermalgia, primary, AD; 133020; Small fiber neuropathy, AD; 133020; HSAN2D, autosomal recessive, AR; 243000; Insensitivity to pain, congenital, AR; 243000; Paroxysmal extreme pain disorder,AD; 167400
Publications
BRIDGE consortium (NIHRBR-RD)
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Generalized epilepsy with febrile seizures plus, type 7; Primary erythermalgia; Familial febrile seizures-3B; Congenital indifference to pain; Hereditary sensory neuropathy type IID; Paroxysmal extreme pain disorder; Small fiber neuropathy
Publications
Variants in this GENE are reported as part of current diagnostic practice
Arianna Tucci (Genomics England Curator)
Autosomal dominant point mutations have been associated with two different pain syndromes associated with gain of function—primary erythromelalgia and paroxysmal extreme pain disorder. Nonsense recessive mutations have been associated with congenital insensitivity to pain.
Created: 27 Jun 2017, 1 p.m.
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Insensitivity to pain, congenital 243000; Paroxysmal extreme pain disorder, 167400
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Phenotypes
-
- Erythermalgia, primary, AD, 133020
- Small fiber neuropathy, AD,133020
- HSAN2D, autosomal recessive, AR, 243000
- Insensitivity to pain, congenital, AR, 243000
- Paroxysmal extreme pain disorder, AD, 167400
- OMIM
- 603415
- Clinvar variants
- Variants in SCN9A
- Penetrance
- Complete
- Publications
- Panels with this gene
-
- Childhood onset dystonia, chorea or related movement disorder
- Hereditary ataxia with onset in adulthood
- Familial dysautonomia
- Hereditary neuropathy
- Adult onset dystonia, chorea or related movement disorder
- Vascular skin disorders
- Early onset or syndromic epilepsy
- Pain syndromes
- Intellectual disability
- Brain channelopathy
- Paroxysmal central nervous system disorders
- Hereditary neuropathy or pain disorder
- Adult onset neurodegenerative disorder
History Filter Activity
panel promoted to version 1
Louise Daugherty (Genomics England Curator)19th September 2017. Panel reviews were assessed, and panel was revised according to reviews and further curation.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for SCN9A were set to Erythermalgia, primary, AD, 133020; Small fiber neuropathy, AD,133020; HSAN2D, autosomal recessive, AR, 243000; Insensitivity to pain, congenital, AR, 243000; Paroxysmal extreme pain disorder, AD, 167400
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for SCN9A were set to Erythermalgia, primary, AD; 133020; Small fiber neuropathy, AD; 133020; HSAN2D, autosomal recessive, AR; 243000; Insensitivity to pain, congenital, AR; 243000; Paroxysmal extreme pain disorder,AD; 167400;
Set publications
Louise Daugherty (Genomics England Curator)Publications for SCN9A were set to 17167479; 14985375;28665811; 28235406; 24813307; 25316021; 16392115; 16216943; 1536168; 15958509; 16392115; 17167479; 17470132; 23596073; 17145499; 24817410; 17679678; 28665811
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Created
BRIDGE consortium (NIHRBR-RD)SCN9A was created by BRIDGE
Added New Source
BRIDGE consortium (NIHRBR-RD)SCN9A was added to Pain syndromespanel. Sources: BRIDGE Study Tier 1 Gene