Limb disorders
Gene: NEK1EnsemblGeneIds (GRCh38): ENSG00000137601
EnsemblGeneIds (GRCh37): ENSG00000137601
OMIM: 604588, Gene2Phenotype
NEK1 is in 16 panels
2 reviews
Eleanor Williams (Genomics England Curator)
Comment on list classification: Gene made grey as it is green on the Rare multisystem ciliopathy disorders panel (v1.78) and the ciliopathy panel will be applied if a patient is suspected of having a ciliopathy, or the possibility of a ciliopathy cannot be excluded.Created: 2 Dec 2018, 11:08 p.m.
Comment on list classification: Rating this gene as green as there are > 3 cases where the patients show polydactyly/polysyndactyly.Created: 6 Nov 2018, 4:51 p.m.
Genomics England clinical team notes - Not primarily limb - short rib +/- polydactyly (ciliopathy). On ciliopathy, skeletal dysplasia, clefting and thoracic dystrophies panels alreadyCreated: 9 Sep 2018, 5:50 p.m.
Comment on list classification: Rated Amber after review by Genomics England clinical teamCreated: 9 Sep 2018, 5:50 p.m.
Ellen McDonagh (Genomics England Curator)
Comment on list classification: Promoted this gene to green due to more than 3 cases (this is a Green gene for this phenotype on other panels), and all cases in the two publications have polydactyly/polysyndactyly.Created: 9 Apr 2018, 11:21 a.m.
Comment on publications: PMID: 21211617 All affected individuals had a narrow thorax with hypoplastic lungs, extreme polysyndactyly, dysproportionate dwarfism, and median cleft lip and palate.Created: 9 Apr 2018, 11:19 a.m.
PMID: 22499340 - the 5 cases reported with a NEK1 variant had polydactyly and/or polysyndactyly.Created: 9 Apr 2018, 11:16 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Short-rib thoracic dysplasia 6 with or without polydactyly 263520
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Removed
- Victorian Clinical Genetics Services
- Other
- Phenotypes
-
- Short-rib thoracic dysplasia 6 with or without polydactyly 263520
- Polydactyly
- Tags
- OMIM
- 604588
- Clinvar variants
- Variants in NEK1
- Penetrance
- None
- Publications
- Panels with this gene
-
- Renal ciliopathies
- Limb disorders
- DDG2P
- Clefting
- Osteogenesis imperfecta
- Adult onset neurodegenerative disorder
- Ductal plate malformation
- Skeletal ciliopathies
- Skeletal dysplasia
- Fetal anomalies
- Amyotrophic lateral sclerosis/motor neuron disease
- Thoracic dystrophies
- Primary ciliary disorders
- Rare multisystem ciliopathy disorders
- Intellectual disability
- Childhood onset dystonia, chorea or related movement disorder
History Filter Activity
Added Tag
Arina Puzriakova (Genomics England Curator)Tag curated_removed tag was added to gene: NEK1.
Panel promoted to version 1.0
Eleanor Williams (Genomics England Curator)Ellen McDonagh: PMID: 22499340 - the 5 cases r
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: nek1 has been removed from the panel.
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source Expert Review Removed was added to NEK1. Rating Changed from Green List (high evidence) to No List (delete)
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: nek1 has been classified as Green List (High Evidence).
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: nek1 has been classified as Green List (High Evidence).
Entity classified by Genomics England curator
Eleanor Williams (Genomics England Curator)Gene: nek1 has been classified as Amber List (Moderate Evidence).
Added New Source, Set penetrance
Ellen McDonagh (Genomics England Curator)Victorian Clinical Genetics Services was added to NEK1. Panel: Limb disorders Phenotypes for gene NEK1 were set to Short-rib thoracic dysplasia 6 with or without polydactyly 263520, Polydactyly
Gene classified by Genomics England curator
Ellen McDonagh (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Ellen McDonagh (Genomics England Curator)Publications for NEK1 were set to 22499340; 21211617
Set publications
Ellen McDonagh (Genomics England Curator)Publications for NEK1 were set to 22499340
Added New Source
Ellen McDonagh (Genomics England Curator)NEK1 was added to Limb disorders panel. Sources: Other
Created
Ellen McDonagh (Genomics England Curator)NEK1 was created by Ellen McDonagh