Intellectual disability update Jan 2018

Gene: GFER

Green List (high evidence)

GFER (growth factor, augmenter of liver regeneration)
EnsemblGeneIds (GRCh38): ENSG00000127554
EnsemblGeneIds (GRCh37): ENSG00000127554
OMIM: 600924, Gene2Phenotype
GFER is in 12 panels

2 reviews

Helen Brittain (Genomics England Curator)

Comment when marking as ready: Sufficient cases, appropriate phenotype
Created: 5 Mar 2018, 11:47 a.m.

Louise Daugherty (Genomics England Curator)

Green List (high evidence)

Comment on list classification: changed from Red to Green, there is enough evidence in the literature to support ID being associated to variants of this gene. Last OMIM update was 2009, there have been more recent papers published to support association to the disorder, which includes developmental delay, and this is reflected in pathogenic variants ClinVar
Created: 1 Mar 2018, 6:41 p.m.
Comment on publications: added publications to support ID phenotype, there are more than three unrelated cases with ID. PMID: 19409522 (2009) describes 3 siblings of a consanguineous Moroccan family. Their phenotype included congenital cataracts, hypotonia, developmental delay, and sensorineural hearing loss and in PMID: 26018198 (20015) noted another unrelated case who was moderately cognitively delayed. More recently PMID: 28155230 (2017) two more unrelated cases were reported with severe/profound ID and global delay
Created: 1 Mar 2018, 6:23 p.m.
This gene is also a possible DD gene in Gene2Phenotype for MITOCHONDRIAL PROGRESSIVE MYOPATHY WITH CONGENITAL CATARACT HEARING LOSS AND DEVELOPMENTAL DELAY (MPMCHD)
Created: 1 Mar 2018, 6:17 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Radboud University Medical Center, Nijmegen
Phenotypes
  • Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076
  • Intellectual disability
OMIM
600924
Clinvar variants
Variants in GFER
Penetrance
None
Publications
Panels with this gene

History Filter Activity

5 Mar 2018, Gel status: 3

Gene classified by Genomics England curator

Helen Brittain (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

1 Mar 2018, Gel status: 3

Set publications

Louise Daugherty (Genomics England Curator)

Publications for GFER were set to 19409522; 26018198; 28155230

1 Mar 2018, Gel status: 3

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Green List (High Evidence).

1 Mar 2018, Gel status: 2

Gene classified by Genomics England curator

Louise Daugherty (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

1 Mar 2018, Gel status: 1

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for GFER were set to Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076; Intellectual disability

1 Mar 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for GFER were set to 19409522, 26018198, 28155230

1 Mar 2018, Gel status: 1

Set publications

Louise Daugherty (Genomics England Curator)

Publications for GFER were set to 19409522, 26018198

1 Mar 2018, Gel status: 1

Set mode of inheritance

Louise Daugherty (Genomics England Curator)

Mode of inheritance for GFER was changed from to BIALLELIC, autosomal or pseudoautosomal

1 Mar 2018, Gel status: 1

Set Phenotypes

Louise Daugherty (Genomics England Curator)

Phenotypes for GFER were set to Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076

18 Dec 2017, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

GFER was added to Intellectual disability update Jan 2018 panel. Sources: Radboud University Medical Center, Nijmegen,Expert Review Red

18 Dec 2017, Gel status: 1

Created

Ellen McDonagh (Genomics England Curator)

GFER was created by Ellen McDonagh