Intellectual disability update Jan 2018
Gene: GFEREnsemblGeneIds (GRCh38): ENSG00000127554
EnsemblGeneIds (GRCh37): ENSG00000127554
OMIM: 600924, Gene2Phenotype
GFER is in 12 panels
2 reviews
Helen Brittain (Genomics England Curator)
Comment when marking as ready: Sufficient cases, appropriate phenotypeCreated: 5 Mar 2018, 11:47 a.m.
Louise Daugherty (Genomics England Curator)
Comment on list classification: changed from Red to Green, there is enough evidence in the literature to support ID being associated to variants of this gene. Last OMIM update was 2009, there have been more recent papers published to support association to the disorder, which includes developmental delay, and this is reflected in pathogenic variants ClinVarCreated: 1 Mar 2018, 6:41 p.m.
Comment on publications: added publications to support ID phenotype, there are more than three unrelated cases with ID. PMID: 19409522 (2009) describes 3 siblings of a consanguineous Moroccan family. Their phenotype included congenital cataracts, hypotonia, developmental delay, and sensorineural hearing loss and in PMID: 26018198 (20015) noted another unrelated case who was moderately cognitively delayed. More recently PMID: 28155230 (2017) two more unrelated cases were reported with severe/profound ID and global delayCreated: 1 Mar 2018, 6:23 p.m.
This gene is also a possible DD gene in Gene2Phenotype for MITOCHONDRIAL PROGRESSIVE MYOPATHY WITH CONGENITAL CATARACT HEARING LOSS AND DEVELOPMENTAL DELAY (MPMCHD)Created: 1 Mar 2018, 6:17 p.m.
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Radboud University Medical Center, Nijmegen
- Phenotypes
-
- Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076
- Intellectual disability
- OMIM
- 600924
- Clinvar variants
- Variants in GFER
- Penetrance
- None
- Publications
- Panels with this gene
-
- Likely inborn error of metabolism
- Monogenic hearing loss
- Intellectual disability
- Bilateral congenital or childhood onset cataracts
- Possible mitochondrial disorder - nuclear genes
- Congenital myopathy
- Undiagnosed metabolic disorders
- DDG2P
- Structural eye disease
- Arthrogryposis
- Childhood onset dystonia, chorea or related movement disorder
- Mitochondrial disorders
History Filter Activity
Gene classified by Genomics England curator
Helen Brittain (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for GFER were set to 19409522; 26018198; 28155230
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for GFER were set to Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076; Intellectual disability
Set publications
Louise Daugherty (Genomics England Curator)Publications for GFER were set to 19409522, 26018198, 28155230
Set publications
Louise Daugherty (Genomics England Curator)Publications for GFER were set to 19409522, 26018198
Set mode of inheritance
Louise Daugherty (Genomics England Curator)Mode of inheritance for GFER was changed from to BIALLELIC, autosomal or pseudoautosomal
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for GFER were set to Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076
Added New Source
Ellen McDonagh (Genomics England Curator)GFER was added to Intellectual disability update Jan 2018 panel. Sources: Radboud University Medical Center, Nijmegen,Expert Review Red
Created
Ellen McDonagh (Genomics England Curator)GFER was created by Ellen McDonagh