Ehlers Danlos syndrome with a likely monogenic cause
Gene: COL12A1EnsemblGeneIds (GRCh38): ENSG00000111799
EnsemblGeneIds (GRCh37): ENSG00000111799
OMIM: 120320, Gene2Phenotype
COL12A1 is in 8 panels
7 reviews
Sarah Leigh (Genomics England Curator)
Associated with relevant phenotype in OMIM, but not associated with phenotype in Gen2Phen. At least five COL12A1 variants have been reported in at least five unrelated cases. Supportive functional studies using patient's fibroblasts were presented for each of the five variants (PMID: 24334604, 24334769, 27348394, 35019233).Created: 15 Jun 2023, 4:40 p.m. | Last Modified: 15 Jun 2023, 4:40 p.m.
Panel Version: 3.2
Publications
Ivone Leong (Genomics England Curator)
Comment on phenotypes: Previous phenotypes:
Myopathic EDS;mEDS;EDS/Myopathy overlap syndrome;Ehlers-Danlos syndrome, Myopathic typeCreated: 18 Mar 2021, 1:38 p.m. | Last Modified: 18 Mar 2021, 1:38 p.m.
Panel Version: 2.18
Duncan Baker (Sheffield Genetics)
Eleanor Williams (Genomics England Curator)
This gene was part of an initial gene list collated by Duncan Baker, Sheffield Diagnostic Genetics Service, January 2019 on behalf of the GMS Musculoskeletal Specialist Group; Gene symbol submitted: COL12A1; Suggested initial gene rating: greenCreated: 3 Apr 2019, 3:41 p.m.
Angela Brady (Nhs)
Neeti Ghali (NWTRGS, Northwick Park Hospital)
Louise Daugherty (Genomics England Curator)
Comment on list classification: changed status from amber to green, there is enough evidence in the literature. To date, nine patients from five families with myopathic EDS have been reported: Hicks et al., 2014 (PMID:24334769), Zou et al., 2014 (PMID:24334604) and Punetha et al., 2017 (PMID:273483940).Created: 26 Apr 2017, 9:29 a.m.
This is a rare form of EDS. The spectrum of diseases characterized by muscle weakness, hypotonia, myopathy, and connective tissue symptoms and was first associated with mutations in the genes that code for collagen type VI. However, these conditions have a wide spectrum of severity that ranges from the most severe Ullrich congenital muscular dystrophy to the milder Bethlem myopathy. Hicks et al., 2014 (PMID:24334769), Zou et al., 2014 (PMID:24334604) investigated groups of patients that had some symptoms of myopathies but presented with a distinctive phenotype and did not have mutations affecting type VI collagen and with these studies they identified patients with autosomal recessive and dominant forms of EDS/myopathy PMID:28306225.
Created: 26 Apr 2017, 9:23 a.m.
Comment on phenotypes: removed Bethlem myopathy 2, 616471; ?Ullrich congenital muscular dystrophy 2616470 these are not confirmed gene- phenotype relationships but there is with Myopathic EDSCreated: 26 Apr 2017, 9:12 a.m.
Review from Dr Anthony Vandersteen, IWK Health centre in Halifax, Nova Scotia, Canada : 'Collagen (XII) was categorised as myopathic EDS In latest classification, only a small number of families, if one was to include this, then COL6A1, COL6A2 and COL6A3 should also be included.'
Created: 26 Apr 2017, 9 a.m.
Myopathic EDS which is caused by heterozygous or biallelic mutations in COL12A1 (mEDS) and which clinically overlaps with Bethlem Myopathy and Ullrich congenital muscular dystrophy (PMID:28306229)- which are other heritable connective tissue disorders (HCTDs) as a result of other mutations, for example in COL12A1, COL6A1, COL6A2, COL6A3Created: 26 Apr 2017, 8:09 a.m.
Comment on phenotypes: The clinical phenotype highly overlaps with collagen type VI-related myopathies, that is, Bethlem Myopathy, and Ullrich Congenital Muscular Dystrophy (PMID:28306229)Created: 25 Apr 2017, 1:55 p.m.
Comment on list classification: Awaiting expert review on whether this can be made GreenCreated: 6 Apr 2017, 3:57 p.m.
In relation to the EDS pathogenetic scheme, COL12A1 belongs to 'Disorders of structure and function of myomatrix, the interface between muscle and ECM'. The scheme regroups EDS subtypes for which the proteins, coded by the causative genes, function within the same pathway, and which are likely to have shared pathogenic mechanisms, based on current knowledge.Created: 4 Apr 2017, 12:56 p.m.
To date, nine patients from five families with myopathic EDS have been reported: Hicks et al., 2014 (PMID:24334769), Zou et al., 2014 (PMID:24334604) and Punetha et al., 2017 (PMID:273483940). The mutations include four heterozygous missense mutations that have an autosomal dominant mode of inheritance: c.7167 T>C, p. (Ile2334Thr), c.C5893T, p.(Arg1965Cys), 8329G>C, p.(Gly2777Arg), and c. G8357A, p.(Gly2786Asp), and one homozygous frameshift mutation, introducing a PTC, associated with autosomal recessive inheritance (c.8006 þ1 G>A, p. (2567Asp>Phefs0 2). However it has been noted that the severity ranges from a severe autosomal recessive neonatal form that was described in two boys born to a consanguineous couple, to a milder autosomal dominant form that presents in childhood with muscle weakness, large joint contractures, and variable degrees of joint hypermobility and hypertrophic scarring. The phenotype may not be fully understood as there are so few reported cases PMID:28306225.
Created: 4 Apr 2017, 12:50 p.m.
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome
Publications
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- NHS GMS
- Expert Review Green
- Literature
- Phenotypes
-
- Bethlem myopathy 2, OMIM:616471
- Bethlem myopathy 2, MONDO:0034022
- OMIM
- 120320
- Clinvar variants
- Variants in COL12A1
- Penetrance
- Complete
- Publications
- Panels with this gene
History Filter Activity
Set publications
Sarah Leigh (Genomics England Curator)Publications for gene: COL12A1 were set to 28306229; 28306225; 24334769; 24334604; 27348394
Set Phenotypes
Sarah Leigh (Genomics England Curator)Phenotypes for gene: COL12A1 were changed from Bethlem myopathy 2, OMIM:616471 to Bethlem myopathy 2, OMIM:616471; Bethlem myopathy 2, MONDO:0034022
Set Phenotypes
Ivone Leong (Genomics England Curator)Phenotypes for gene: COL12A1 were changed from Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome; Ehlers-Danlos syndrome, Myopathic type to Bethlem myopathy 2, OMIM:616471
Added New Source, Status Update
Eleanor Williams (Genomics England Curator)Source NHS GMS was added to COL12A1. Rating Changed from Green List (high evidence) to Green List (high evidence)
panel promoted to version 1
Louise Daugherty (Genomics England Curator)25 July 2017 Panel reviews were assessed, and panel was revised according to reviews and further curation.
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome; Ehlers-Danlos syndrome, Myopathic type
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome; Ehlers-Danlos syndrome, Myopathic type,609192
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome; Bethlem myopathy 2, 616471; ?Ullrich congenital muscular dystrophy 2616470
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS (AR/AD);mEDS;EDS/Myopathy overlap syndrome;Bethlem myopathy 2, 616471; ?Ullrich congenital muscular dystrophy 2616470
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome; Myopathic Ehlers-Danlos syndrome
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Louise Daugherty (Genomics England Curator)Phenotypes for COL12A1 were set to Myopathic EDS; mEDS; EDS/Myopathy overlap syndrome
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Amber List (Moderate Evidence).
Gene classified by Genomics England curator
Louise Daugherty (Genomics England Curator)This gene has been classified as Green List (High Evidence).
Set publications
Louise Daugherty (Genomics England Curator)Publications for COL12A1 were set to 28306229; 28306225; 24334769; 24334604; 27348394
Set publications
Louise Daugherty (Genomics England Curator)Publications for COL12A1 were set to 28306229; 28306225;24334769; 24334604;73483940
Added New Source
Louise Daugherty (Genomics England Curator)COL12A1 was added to Ehlers-Danlos syndromespanel. Sources: Literature
Created
Louise Daugherty (Genomics England Curator)COL12A1 was created by LouiseD