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Childhood onset dystonia, chorea or related movement disorder

Gene: MT-TT

No list

MT-TT (mitochondrially encoded tRNA threonine)
EnsemblGeneIds (GRCh38): ENSG00000210195
EnsemblGeneIds (GRCh37): ENSG00000210195
OMIM: 590090, Gene2Phenotype
MT-TT is in 3 panels

3 reviews

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

After NHS Genomic Medicine Service consideration, the rating of this gene has not been changed and remains grey. Adding this gene to this panel is not consistent with the fact that there are no other similar presenting mitochondrial genes on this panel. Mitochondrial causes of childhood dystonia and movement disorders would be best tested off other more appropriate Clinical Indications.
Created: 26 Sep 2024, 1:08 p.m. | Last Modified: 26 Sep 2024, 1:08 p.m.
Panel Version: 5.3
Comment on list classification: On 18 Aug 2020, the status of MT-TT on the Childhood onset dystonia, chorea or related movement disorder panel was changed from Red to Grey (curator removed), based on a request from NHS England that this Mitochondrial gene should be removed from the panel. Would it be relevant to promote MT-TT to Green, now that there is further evidence to support the association between MT-TT variants and human disease?
Created: 24 Jun 2024, 12:38 p.m. | Last Modified: 24 Jun 2024, 12:38 p.m.
Panel Version: 4.6
At least five MT-TT variants have been associated with human conditions, including: mitochondrial disease (MONDO:0044970); Leber optic atrophy (OMIM:535000); myoclonic epilepsy associated with ragged-red fibers (OMIM:545000); fatal infantile respiratory enzyme deficiency; inherited Diabetes Mellitus; adult onset mild mypathy and other mitochondrial diseases. The condition and severity appear to be dependent on the location of the variant whether the variant is homoplasmic or the percentage of heteroplasmy (PMID: 35808913; 32083134; 30236074; 28187756; 29760464; 22638997; 1645537). MT-TT variants are not associated with a disease in OMIM or Gen2Phen, however, the ClinGen Mitochondrial Diseases Gene Curation Expert Panel has rated association between MT-TT variants and mitochondrial disease (MONDO:0044970) as Moderate.
Created: 24 Jun 2024, 12:35 p.m. | Last Modified: 24 Jun 2024, 12:35 p.m.
Panel Version: 4.5

Eleanor Williams (Genomics England Curator)

Comment on list classification: Mitochondrial gene removed from the panel at the request of NHS England following discussion at a Rare Disease workshop. Rating changed from red to grey.
Created: 18 Aug 2020, 3:45 p.m. | Last Modified: 18 Aug 2020, 4:09 p.m.
Panel Version: 1.45

James Polke (Neurogenetics Laboratory, Institute of Neurology, London)

Red List (low evidence)

Details

Mode of Inheritance
MITOCHONDRIAL
Sources
  • Expert Review Removed
  • London North GLH
Phenotypes
  • mitochondrial disease
  • Leber optic atrophy, OMIM:535000
  • myoclonic epilepsy associated with ragged-red fibers, OMIM:545000
  • fatal infantile respiratory enzyme deficiency
  • Inherited Diabetes Mellitus
  • adult onset mild mypathy
Tags
curated_removed
OMIM
590090
Clinvar variants
Variants in MT-TT
Penetrance
None
Publications
Panels with this gene

History Filter Activity

26 Sep 2024, Gel status: 0

Removed Tag, Removed Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_promote_green was removed from gene: MT-TT. Tag Q2_24_expert_review was removed from gene: MT-TT.

24 Jun 2024, Gel status: 0

Entity classified by Genomics England curator

Sarah Leigh (Genomics England Curator)

Gene: mt-tt has been removed from the panel.

24 Jun 2024, Gel status: 0

Added Tag, Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_promote_green tag was added to gene: MT-TT. Tag Q2_24_expert_review tag was added to gene: MT-TT.

24 Jun 2024, Gel status: 0

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: MT-TT were set to

18 Jun 2024, Gel status: 0

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: MT-TT were changed from to mitochondrial disease; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild mypathy

26 Feb 2021, Gel status: 0

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag curated_removed tag was added to gene: MT-TT.

18 Aug 2020, Gel status: 0

Entity classified by Genomics England curator

Eleanor Williams (Genomics England Curator)

Gene: mt-tt has been removed from the panel.

6 Dec 2019, Gel status: 1

Created, Added New Source, Set mode of inheritance

Ellen McDonagh (Genomics England Curator)

gene: MT-TT was added gene: MT-TT was added to Childhood onset dystonia or chorea or related movement disorder. Sources: London North GLH,Expert Review Red Mode of inheritance for gene gene: MT-TT was set to MITOCHONDRIAL