Proteinuric renal disease

Gene: KANK2

Amber List (moderate evidence)

KANK2 (KN motif and ankyrin repeat domains 2)
EnsemblGeneIds (GRCh38): ENSG00000197256
EnsemblGeneIds (GRCh37): ENSG00000197256
OMIM: 614610, Gene2Phenotype
KANK2 is in 5 panels

4 reviews

Zornitza Stark (Australian Genomics)

Green List (high evidence)

Our reading of Table 1 in this paper is that there were three unrelated families reported; plus animal model. The text does only mention two.
Created: 9 Jan 2020, 3:41 a.m. | Last Modified: 9 Jan 2020, 3:41 a.m.
Panel Version: 2.0

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Nephrotic syndrome, type 16, MIM#617783

Publications

Eleanor Williams (Genomics England Curator)

I don't know

Comment on list classification: Changing rating from red to amber - 2 reported cases.
Created: 21 Mar 2020, 2:25 p.m. | Last Modified: 21 Mar 2020, 2:25 p.m.
Panel Version: 2.9
Associated with Nephrotic syndrome, type 16 #617783 (AR) in OMIM.

PMID: 25961457 - Gee et al 2015 - performed homozygosity mapping and whole-exome sequencing in individuals with NS identified recessive mutations in KANK2 in two families with NS. In family A982 of Arab origin, 2 siblings had early-onset SSNS and were found to have a homozygous missense mutation c.541A>G;p.S181G in KANK2. It segregated with the disorder in the family. In an unrelated individual with SSNS (A1751-21), they found a homozygous missense mutation (c.2051C>T;p.S684F) in KANK2. 27 known genes previously linked to SRNS were screened in this individual, but no explanatory mutations were detected. Knockdown of kank2 in zebrafish results in proteinuria which could be partially rescued by wild type human KANK2 mRNA but not either of the mutant mRNAs.

My reading of Table 1 is that there were two cases - one family with two siblings (individuals A982-21 and A982-22) with the same variant, and a second unrelated individual (A1751-21) with a different missense variant.
Created: 30 Jan 2020, 2:59 p.m. | Last Modified: 30 Jan 2020, 2:59 p.m.
Panel Version: 2.0
This gene was part of an initial gene list collated by Elizabeth Watson, North Bristol NHS Trust, February 2019 on behalf of the GMS Renal Specialist Test Group. Gene Symbol submitted: KANK2; Suggested initial gene rating: amber; Evidence for inclusion: PMID: 25961457; Other comments: Amber: One paper (PMID:25961457) reports rare AR KANK2 variants in association with nephrotic syndrome in three patients from two unrelated families
Created: 4 Feb 2019, 10:41 a.m.

Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal

Phenotypes
Nephrotic syndrome 16 #617783

Publications

Variants in this GENE are reported as part of current diagnostic practice

Ellen Thomas (Genomics England Curator)

Comment on list classification: Only 2 families reported to date but probably a genuine cause so keep under review.
Created: 27 May 2016, 12:22 p.m.

Ellen McDonagh (Genomics England Curator)

Comment on list classification: Gene added by a reviewer.
Created: 13 May 2016, 2:16 p.m.

Details

Mode of Inheritance
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • NHS GMS
Phenotypes
  • Early-Childhood-Onset Steroid-Resistant Nephrotic Syndrome
  • Nephrotic syndrome 16 #617783
OMIM
614610
Clinvar variants
Variants in KANK2
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

21 Mar 2020, Gel status: 2

Entity classified by Genomics England curator

Eleanor Williams (Genomics England Curator)

Gene: kank2 has been classified as Amber List (Moderate Evidence).

23 Jun 2019, Gel status: 1

Set Phenotypes

Eleanor Williams (Genomics England Curator)

Phenotypes for gene: KANK2 were changed from Early-Childhood-Onset Steroid-Resistant Nephrotic Syndrome to Early-Childhood-Onset Steroid-Resistant Nephrotic Syndrome; Nephrotic syndrome 16 #617783

23 Jun 2019, Gel status: 1

Set publications

Eleanor Williams (Genomics England Curator)

Publications for gene: KANK2 were set to J Clin Invest. 2015; 125(6):2375–2384

4 Feb 2019, Gel status: 1

Added New Source

Eleanor Williams (Genomics England Curator)

Source NHS GMS was added to KANK2.

27 May 2016, Gel status: 1

Gene classified by Genomics England curator

Ellen Thomas (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

27 May 2016, Gel status: 1

Gene classified by Genomics England curator

Ellen Thomas (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

13 May 2016, Gel status: 1

Gene classified by Genomics England curator

Ellen McDonagh (Genomics England Curator)

This gene has been classified as Red List (Low Evidence).

19 Oct 2015, Gel status: 0

Added New Source

Maggie Williams (North Bristol NHS Trust)

KANK2 was added to Proteinuric renal diseasepanel. Sources: Literature