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Mitochondrial disorders

Gene: MT-TT

Green List (high evidence)

MT-TT (mitochondrially encoded tRNA threonine)
EnsemblGeneIds (GRCh38): ENSG00000210195
EnsemblGeneIds (GRCh37): ENSG00000210195
OMIM: 590090, Gene2Phenotype
MT-TT is in 3 panels

5 reviews

Achchuthan Shanmugasundram (Genomics England Curator)

Green List (high evidence)

The rating of this gene has been updated to green following NHS Genomic Medicine Service approval.
Created: 26 Sep 2024, 3:51 p.m. | Last Modified: 26 Sep 2024, 3:51 p.m.
Panel Version: 7.3

Mode of inheritance
MITOCHONDRIAL

Sarah Leigh (Genomics England Curator)

Green List (high evidence)

At least five MT-TT variants have been associated with human conditions, including: mitochondrial disease (MONDO:0044970); Leber optic atrophy (OMIM:535000); myoclonic epilepsy associated with ragged-red fibers (OMIM:545000); fatal infantile respiratory enzyme deficiency; inherited Diabetes Mellitus; adult onset mild mypathy and other mitochondrial diseases. The condition and severity appear to be dependent on the location of the variant whether the variant is homoplasmic or the percentage of heteroplasmy (PMID: 35808913; 32083134; 30236074; 28187756; 29760464; 22638997; 1645537).
MT-TT variants are not associated with a disease in OMIM or Gen2Phen, however, the ClinGen Mitochondrial Diseases Gene Curation Expert Panel has rated association between MT-TT variants and mitochondrial disease (MONDO:0044970) as Moderate.
Created: 18 Jun 2024, 4:45 p.m. | Last Modified: 18 Jun 2024, 4:45 p.m.
Panel Version: 6.8

Carl Fratter (Oxford University Hospitals NHS Trust)

I don't know

Mode of inheritance
MITOCHONDRIAL

Variants in this GENE are reported as part of current diagnostic practice

Ellen McDonagh (Genomics England Curator)

Comment on list classification: From red to Amber...one reviewer is unsure though has checked current diagnostic. Variants of unknown significance reported in OMIM.
Created: 12 Feb 2016, 11:18 a.m.

Shamima Rahman (UCL Institute of Child Health)

Green List (high evidence)

Details

Mode of Inheritance
MITOCHONDRIAL
Sources
  • Expert Review Green
  • NHS GMS
  • UKGTN
Phenotypes
  • mitochondrial disease, MONDO:0044970
  • Leber optic atrophy, OMIM:535000
  • myoclonic epilepsy associated with ragged-red fibers, OMIM:545000
  • fatal infantile respiratory enzyme deficiency
  • Inherited Diabetes Mellitus
  • adult onset mild myopathy
Tags
gene-checked
OMIM
590090
Clinvar variants
Variants in MT-TT
Penetrance
Complete
Publications
Panels with this gene

History Filter Activity

2 Oct 2024, Gel status: 3

Added Tag

Arina Puzriakova (Genomics England Curator)

Tag gene-checked tag was added to gene: MT-TT.

26 Sep 2024, Gel status: 3

Removed Tag

Achchuthan Shanmugasundram (Genomics England Curator)

Tag Q2_24_promote_green was removed from gene: MT-TT.

26 Sep 2024, Gel status: 3

Added New Source, Added New Source, Status Update

Achchuthan Shanmugasundram (Genomics England Curator)

Source NHS GMS was added to MT-TT. Source Expert Review Green was added to MT-TT. Rating Changed from Amber List (moderate evidence) to Green List (high evidence)

18 Jun 2024, Gel status: 2

Added Tag

Sarah Leigh (Genomics England Curator)

Tag Q2_24_promote_green tag was added to gene: MT-TT.

18 Jun 2024, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: MT-TT were changed from mitochondrial disease, MONDO:0044970; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild mypathy to mitochondrial disease, MONDO:0044970; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild myopathy

18 Jun 2024, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: MT-TT were changed from mitochondrial disease; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild mypathy to mitochondrial disease, MONDO:0044970; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild mypathy

18 Jun 2024, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: MT-TT were set to 32083134; 8769114; 9367299; 1645537; 8511015; 22638997; 29760464; 30236074; 28187756; 35808913

18 Jun 2024, Gel status: 2

Set Phenotypes

Sarah Leigh (Genomics England Curator)

Phenotypes for gene: MT-TT were changed from to mitochondrial disease; Leber optic atrophy, OMIM:535000; myoclonic epilepsy associated with ragged-red fibers, OMIM:545000; fatal infantile respiratory enzyme deficiency; Inherited Diabetes Mellitus; adult onset mild mypathy

18 Jun 2024, Gel status: 2

Set publications

Sarah Leigh (Genomics England Curator)

Publications for gene: MT-TT were set to

12 Feb 2016, Gel status: 2

Gene classified by Genomics England curator

Ellen McDonagh (Genomics England Curator)

This gene has been classified as Amber List (Moderate Evidence).

30 Jun 2015, Gel status: 1

Added New Source

Ellen McDonagh (Genomics England Curator)

MT-TT was added to All recognised syndromes and those with suggestive featurespanel. Sources: UKGTN